Rh1AG097900

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001760
Physical Location & Seq
Reverse (-)
17062874 .. 17064349
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG097900.1

Sequence Viewer

Length: 1476 bp
ATGCAGCTTCCATTTTCTGATCTTCAGCAGAATCATCAGATGTCTCCTTTTCAGCAGACATCACAATCTGTGATTAACAATCATCCACAGACAGCCTTTAGGCAAATAAACTCATCACAACATGCTCCTTATATTCATCAGAATGCATCATCAATTCCACAGAGTCTGCTAATGCAATCGCAGAAGCATGTTGTGATGAGGAGAAGATTAGCTGCTACCACTCTACAACAGAATCAGTCAACTTGCCTCGACTTTCCACAGCAACAACACATTAACACATACCAGCTGAATGATGCACAACAGCAGTTACATAGACAGAACCTAAATCTTTCGGGTCCGCATCATGAGCAATTGAGCCAAAGAAACATTATCTCTATACAGCAACAAACTCTTGAGAGACAGTTGAATTCTTCACAGGTAGAGAAGATGCAAAGGCAGCAAAACCGAGTAGAACAAGATGAGCAGCAAACACATCAAATGGCAGGAATGCCAGCTTCCACATTATTAATGGAAGGGGAGGTCTACCGAAAGGTCCAAATGCTAAAACGCAAGTATGAAAGACCACTGAAAGTTATCTTCCAAAGGTTCACATATTGTCTCCAGAACCTAGATAGACACAGTATCAACAAACTTGAAGTAGTAAACAGCTTGTATCAGACTGTCAAGTCTATCCTTAGGATGCTGAATGTGCCGGAAAGCGACATTACGCCTACTACCAAGGAGAAGTTGGGTCTACTTGAGAAGAAAATCGAAGATATTCTCCACCCATGTGGAAACCAACAGCGTCAATTGGTGCAAATTGATTCTCGGACTCTTCAAGCTCAGACAAACCAAGAGGAAAAGAAGCCACCAACGCAGACAGTGAATATAGAATGTTTTGCAACAAAGATGCAGCAGAGCAATGTGACAAACTTGATGAACGATTCTCAGCCTCTGATAGAGAAACATGGCAGAAAACATTTGCCAAGAAACTTGACTAGGAAAGATTCAGATCAAGCAAGTTCATCCGGGTACTTGACAATGCCTACAAGTAGTCCCCAACAACAAAATGCTATGACCTTGTTGTCACAAAACCCCATTCAGTCAAATGTCAATAATTTGGAGTCAAGATTTAGTGTACCTCGATATGTGCACCTGAAACAATCTAACGAACAGCAGGATGTGCAAACTCAAAAACCAAAACAGCAATTACTGCAGGAGAATCACCGGCTGGTGAAGTTGCAGCCTGAAGCTTTTCCTAATCCTTTGCGGGAAGATCATAATTCTTCCAGTCAACAAGTTCCTAAACATACTTGTCAGAGTGAAAAGATCAACCTTCCAATGCATCTTACAAAAGTTAGCAGTCCTTTCAATTCACCCTCTAGAATTTCTTCTTTGGCTCCCAAGGCTTCATCACCTATGCCAGTGGACTCTGAGAAACCTAAGTCAGATACTCTGTCCAACTCAATGCTGGAAATATTGGAGATGAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

491

Amino Acids

56.59

Weight (kDa)

9.46

Isoelectric Point (pI)

74.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 664, 1063
AccI GTMKAC 2 cut(s) 522, 733
AciI CCGC 2 cut(s) 338, 1249
AcsI RAATTY 2 cut(s) 406, 1365
AcuI CTGAAG 2 cut(s) 8, 1248
AfaI GTAC 2 cut(s) 1013, 1119
AgsI TTSAA 4 cut(s) 406, 635, 818, 1351
AleI CACNNNNGTG 1 cut(s) 768
AluBI AGCT 7 cut(s) 7, 212, 286, 494, 648, 821, 1232
AluI AGCT 7 cut(s) 7, 212, 286, 494, 648, 821, 1232
Alw21I GWGCWC 1 cut(s) 1134
Alw26I GTCTC 3 cut(s) 48, 391, 602
Alw44I GTGCAC 1 cut(s) 1130
AlwNI CAGNNNCTG 2 cut(s) 166, 934
ApaLI GTGCAC 1 cut(s) 1130
ApeKI GCWGC 6 cut(s) 4, 212, 436, 463, 892, 1222
ApoI RAATTY 2 cut(s) 406, 1365
AseI ATTAAT 1 cut(s) 506
Asp700I GAANNNNTTC 3 cut(s) 756, 1233, 1369
AspS9I GGNCC 2 cut(s) 335, 532
AsuC2I CCSGG 1 cut(s) 1009
AsuHPI GGTGA 4 cut(s) 1196, 1225, 1347, 1386
AvaII GGWCC 2 cut(s) 335, 532
AxyI CCTNAGG 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 1134
Bbv12I GWGCWC 1 cut(s) 1134
BbvI GCAGC 6 cut(s) 16, 199, 448, 475, 904, 1234
BcnI CCSGG 1 cut(s) 1009
BcoDI GTCTC 3 cut(s) 48, 391, 602
BfaI CTAG 3 cut(s) 608, 978, 1362
BfmI CTRYAG 1 cut(s) 1193
BisI GCNGC 6 cut(s) 5, 213, 437, 464, 893, 1223
BlsI GCNGC 6 cut(s) 6, 214, 438, 465, 894, 1224
Bme1390I CCNGG 1 cut(s) 1009
Bme18I GGWCC 2 cut(s) 335, 532
BmgT120I GGNCC 2 cut(s) 335, 532
BmiI GGNNCC 2 cut(s) 336, 1380
BmrFI CCNGG 1 cut(s) 1009
BmsI GCATC 7 cut(s) 155, 283, 349, 417, 669, 879, 1333
BpmI CTGGAG 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 413, 758
BpuMI CCSGG 1 cut(s) 1009
BsaBI GATNNNNATC 1 cut(s) 990
BsaJI CCNNGG 2 cut(s) 717, 1383
Bse118I RCCGGY 1 cut(s) 1206
Bse1I ACTGG 2 cut(s) 1269, 1403
Bse21I CCTNAGG 1 cut(s) 674
Bse3DI GCAATG 1 cut(s) 907
Bse8I GATNNNNATC 1 cut(s) 990
BseDI CCNNGG 2 cut(s) 717, 1383
BseGI GGATG 4 cut(s) 82, 684, 1004, 1165
BseJI GATNNNNATC 1 cut(s) 990
BseMI GCAATG 1 cut(s) 907
BseMII CTCAG 3 cut(s) 836, 941, 1404
BseNI ACTGG 2 cut(s) 1269, 1403
BseRI GAGGAG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 1134
BseXI GCAGC 6 cut(s) 16, 199, 448, 475, 904, 1234
BsiHKAI GWGCWC 1 cut(s) 1134
BsiSI CCGG 3 cut(s) 692, 1008, 1207
BslFI GGGAC 1 cut(s) 1020
BsmAI GTCTC 3 cut(s) 48, 391, 602
BsmFI GGGAC 1 cut(s) 1020
BsmI GAATGC 2 cut(s) 148, 492
Bsp1286I GDGCHC 1 cut(s) 1134
Bsp143I GATC 4 cut(s) 19, 991, 1255, 1308
BspACI CCGC 2 cut(s) 338, 1249
BspCNI CTCAG 3 cut(s) 835, 940, 1405
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 336, 1380
BspMAI CTGCAG 1 cut(s) 1197
BsrDI GCAATG 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 1206
BsrI ACTGG 2 cut(s) 1269, 1403
BssAI RCCGGY 1 cut(s) 1206
BssECI CCNNGG 2 cut(s) 717, 1383
BssMI GATC 4 cut(s) 19, 991, 1255, 1308
BssT1I CCWWGG 2 cut(s) 717, 1383
Bst4CI ACNGT 4 cut(s) 402, 620, 661, 862
Bst6I CTCTTC 1 cut(s) 819
BstAPI GCANNNNNTGC 2 cut(s) 1162, 1192
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 5 cut(s) 674, 822, 927, 1413, 1422
BstF5I GGATG 4 cut(s) 82, 684, 1004, 1165
BstKTI GATC 4 cut(s) 22, 994, 1258, 1311
BstMAI GTCTC 3 cut(s) 48, 391, 602
BstMBI GATC 4 cut(s) 19, 991, 1255, 1308
BstMWI GCNNNNNNNGC 7 cut(s) 346, 436, 688, 853, 1162, 1192, 1385
BstNSI RCATGY 2 cut(s) 125, 191
BstSCI CCNGG 1 cut(s) 1007
BstSFI CTRYAG 1 cut(s) 1193
BstSLI GKGCMC 1 cut(s) 1134
BstV1I GCAGC 6 cut(s) 16, 199, 448, 475, 904, 1234
BstXI CCANNNNNNTGG 1 cut(s) 770
Bsu36I CCTNAGG 1 cut(s) 674
BtsCI GGATG 4 cut(s) 82, 684, 1004, 1165
BtsIMutI CAGTG 3 cut(s) 563, 867, 1410
Cac8I GCNNGC 1 cut(s) 492
CaiI CAGNNNCTG 2 cut(s) 166, 934
CciI TCATGA 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 1206
Cfr13I GGNCC 2 cut(s) 335, 532
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 1012, 1118
CviAII CATG 5 cut(s) 122, 188, 344, 768, 947
CviQI GTAC 2 cut(s) 1012, 1118
DdeI CTNAG 5 cut(s) 674, 822, 927, 1413, 1422
DpnI GATC 4 cut(s) 21, 993, 1257, 1310
DpnII GATC 4 cut(s) 19, 991, 1255, 1308
DrdI GACNNNNNNGTC 2 cut(s) 664, 1063
DseDI GACNNNNNNGTC 2 cut(s) 664, 1063
Eam1104I CTCTTC 1 cut(s) 819
EarI CTCTTC 1 cut(s) 819
Eco130I CCWWGG 2 cut(s) 717, 1383
Eco47I GGWCC 2 cut(s) 335, 532
Eco57I CTGAAG 2 cut(s) 8, 1248
Eco81I CCTNAGG 1 cut(s) 674
EcoRI GAATTC 1 cut(s) 406
EcoT14I CCWWGG 2 cut(s) 717, 1383
EcoT22I ATGCAT 2 cut(s) 148, 1326
ErhI CCWWGG 2 cut(s) 717, 1383
FaeI CATG 5 cut(s) 125, 191, 347, 771, 950
FaqI GGGAC 1 cut(s) 1020
FatI CATG 5 cut(s) 121, 187, 343, 767, 946
FauI CCCGC 1 cut(s) 1242
FblI GTMKAC 2 cut(s) 522, 733
Fnu4HI GCNGC 6 cut(s) 5, 213, 437, 464, 893, 1223
FokI GGATG 4 cut(s) 69, 691, 991, 1172
Fsp4HI GCNGC 6 cut(s) 5, 213, 437, 464, 893, 1223
FspBI CTAG 3 cut(s) 608, 978, 1362
GluI GCNGC 6 cut(s) 5, 213, 437, 464, 893, 1223
GsuI CTGGAG 1 cut(s) 584
HapII CCGG 3 cut(s) 692, 1008, 1207
HgaI GACGC 1 cut(s) 773
Hin1II CATG 5 cut(s) 125, 191, 347, 771, 950
HincII GTYRAC 2 cut(s) 240, 1274
HindII GTYRAC 2 cut(s) 240, 1274
HindIII AAGCTT 1 cut(s) 1230
HpaII CCGG 3 cut(s) 692, 1008, 1207
HphI GGTGA 4 cut(s) 1196, 1225, 1347, 1386
Hpy166II GTNNAC 9 cut(s) 240, 523, 588, 643, 734, 1118, 1132, 1274, 1408
Hpy188III TCNNGA 5 cut(s) 344, 392, 601, 1107, 1362
Hpy8I GTNNAC 9 cut(s) 240, 523, 588, 643, 734, 1118, 1132, 1274, 1408
HpyAV CCTTC 2 cut(s) 506, 1325
HpyCH4III ACNGT 4 cut(s) 402, 620, 661, 862
HpyF10VI GCNNNNNNNGC 7 cut(s) 346, 436, 688, 853, 1162, 1192, 1385
HpyF3I CTNAG 5 cut(s) 674, 822, 927, 1413, 1422
Hsp92II CATG 5 cut(s) 125, 191, 347, 771, 950
Kzo9I GATC 4 cut(s) 19, 991, 1255, 1308
LmnI GCTCC 2 cut(s) 130, 1384
Lsp1109I GCAGC 6 cut(s) 16, 199, 448, 475, 904, 1234
LweI GCATC 7 cut(s) 155, 283, 349, 417, 669, 879, 1333
MaeI CTAG 3 cut(s) 608, 978, 1362
MaeIII GTNAC 3 cut(s) 306, 904, 1065
MalI GATC 4 cut(s) 21, 993, 1257, 1310
MboI GATC 4 cut(s) 19, 991, 1255, 1308
MfeI CAATTG 2 cut(s) 350, 788
MhlI GDGCHC 1 cut(s) 1134
MlyI GAGTC 4 cut(s) 172, 805, 1112, 1403
MmeI TCCRAC 1 cut(s) 1464
MnlI CCTC 7 cut(s) 192, 257, 511, 829, 942, 1131, 1369
Mph1103I ATGCAT 2 cut(s) 148, 1326
MroXI GAANNNNTTC 3 cut(s) 756, 1233, 1369
MseI TTAA 3 cut(s) 75, 273, 506
MslI CAYNNNNRTG 2 cut(s) 141, 768
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 3 cut(s) 692, 1008, 1207
MspR9I CCNGG 1 cut(s) 1009
MunI CAATTG 2 cut(s) 350, 788
Mva1269I GAATGC 2 cut(s) 148, 492
MwoI GCNNNNNNNGC 7 cut(s) 346, 436, 688, 853, 1162, 1192, 1385
NciI CCSGG 1 cut(s) 1009
NdeII GATC 4 cut(s) 19, 991, 1255, 1308
NlaIII CATG 5 cut(s) 125, 191, 347, 771, 950
NlaIV GGNNCC 2 cut(s) 336, 1380
NmuCI GTSAC 2 cut(s) 904, 1065
NsiI ATGCAT 2 cut(s) 148, 1326
NspI RCATGY 2 cut(s) 125, 191
OliI CACNNNNGTG 1 cut(s) 768
PagI TCATGA 1 cut(s) 343
PctI GAATGC 2 cut(s) 148, 492
PdmI GAANNNNTTC 3 cut(s) 756, 1233, 1369
PfeI GAWTC 6 cut(s) 31, 232, 803, 923, 986, 1201
PkrI GCNGC 6 cut(s) 6, 214, 438, 465, 894, 1224
PleI GAGTC 4 cut(s) 171, 805, 1111, 1403
PpsI GAGTC 4 cut(s) 171, 805, 1111, 1403
PshBI ATTAAT 1 cut(s) 506
PspN4I GGNNCC 2 cut(s) 336, 1380
PspPI GGNCC 2 cut(s) 335, 532
PstI CTGCAG 1 cut(s) 1197
PstNI CAGNNNCTG 2 cut(s) 166, 934
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 2 cut(s) 1013, 1119
RsaNI GTAC 2 cut(s) 1012, 1118
RseI CAYNNNNRTG 2 cut(s) 141, 768
SaqAI TTAA 3 cut(s) 75, 273, 506
SatI GCNGC 6 cut(s) 5, 213, 437, 464, 893, 1223
Sau3AI GATC 4 cut(s) 19, 991, 1255, 1308
Sau96I GGNCC 2 cut(s) 335, 532
SchI GAGTC 4 cut(s) 172, 805, 1112, 1403
ScrFI CCNGG 1 cut(s) 1009
SduI GDGCHC 1 cut(s) 1134
SfaNI GCATC 7 cut(s) 155, 283, 349, 417, 669, 879, 1333
SfcI CTRYAG 1 cut(s) 1193
SinI GGWCC 2 cut(s) 335, 532
SmiMI CAYNNNNRTG 2 cut(s) 141, 768
SmlI CTYRAG 2 cut(s) 392, 737
SmoI CTYRAG 2 cut(s) 392, 737
SsiI CCGC 2 cut(s) 338, 1249
SspI AATATT 1 cut(s) 1458
SspMI CTAG 3 cut(s) 608, 978, 1362
StyD4I CCNGG 1 cut(s) 1007
StyI CCWWGG 2 cut(s) 717, 1383
TaaI ACNGT 4 cut(s) 402, 620, 661, 862
TaqI TCGA 3 cut(s) 249, 750, 1123
TfiI GAWTC 6 cut(s) 31, 232, 803, 923, 986, 1201
Tru1I TTAA 3 cut(s) 75, 273, 506
Tru9I TTAA 3 cut(s) 75, 273, 506
TscAI CASTG 3 cut(s) 570, 867, 1410
TseFI GTSAC 2 cut(s) 904, 1065
TseI GCWGC 6 cut(s) 4, 212, 436, 463, 892, 1222
Tsp45I GTSAC 2 cut(s) 904, 1065
TspDTI ATGAA 5 cut(s) 125, 570, 932, 993, 1380
TspRI CASTG 3 cut(s) 570, 867, 1410
VneI GTGCAC 1 cut(s) 1130
VpaK11BI GGWCC 2 cut(s) 335, 532
VspI ATTAAT 1 cut(s) 506
XapI RAATTY 2 cut(s) 406, 1365
XbaI TCTAGA 1 cut(s) 1361
XceI RCATGY 2 cut(s) 125, 191
XcmI CCANNNNNNNNNTGG 3 cut(s) 505, 724, 1447
XmiI GTMKAC 2 cut(s) 522, 733
XmnI GAANNNNTTC 3 cut(s) 756, 1233, 1369
XspI CTAG 3 cut(s) 608, 978, 1362
Zsp2I ATGCAT 2 cut(s) 148, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.