Rorug04G0095400

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001760
Physical Location & Seq
Forward (+)
15039907 .. 15041304
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0095400.1

Sequence Viewer

Length: 333 bp
ATGGTTGACTTCAGGTATCCTAACTTGAAGAGTGTCAAGGAATTAATCTACAAGAGGGGCTATGGAAAGCTCAACAAGCAGAGAACTGCTTTGACCGACAATTCTGTTGTTGAACAGGCTTTGGGTAAGCATGGAATCATTTGCGTGGAGGACCTTATCCATGAGATCTTGACTGTTGGACCCCATTTCAAGGAGGCAAACAACTTCCTCTGGCCACTTAAGCTCAAGGCACCCCTTGGTGGTTTGAAGAAAAAGAGAAACCACTATGTTGAAGGCGGTGATGCAGGAAACCGCGAAGATTACATCAATGAGCTCATCAGGAGGATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

110

Amino Acids

12.65

Weight (kDa)

9.52

Isoelectric Point (pI)

28.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AccII CGCG 1 cut(s) 294
AciI CCGC 2 cut(s) 276, 292
AcoI YGGCCR 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 190, 239
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 5 cut(s) 28, 113, 190, 247, 272
AluBI AGCT 3 cut(s) 70, 223, 313
AluI AGCT 3 cut(s) 70, 223, 313
Alw21I GWGCWC 1 cut(s) 315
AoxI GGCC 1 cut(s) 212
AseI ATTAAT 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 151, 179
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 151, 179
BalI TGGCCA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BciVI GTATCC 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 27
BglII AGATCT 1 cut(s) 165
Bme18I GGWCC 2 cut(s) 151, 179
BmgT120I GGNCC 2 cut(s) 151, 179
BmiI GGNNCC 2 cut(s) 181, 231
BmsI GCATC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 239
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 2 cut(s) 190, 239
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 190, 239
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 2 cut(s) 276, 292
BspANI GGCC 1 cut(s) 214
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 181, 231
BspT107I GGYRCC 1 cut(s) 229
BspTI CTTAAG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 294
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 2 cut(s) 76, 220
BstUI CGCG 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 151, 179
CviAII CATG 2 cut(s) 131, 161
CviJI RGCY 6 cut(s) 60, 70, 119, 214, 223, 313
CviKI_1 RGCY 6 cut(s) 60, 70, 119, 214, 223, 313
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 151, 179
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 2 cut(s) 134, 164
FaiI YATR 4 cut(s) 63, 132, 162, 267
FatI CATG 2 cut(s) 130, 160
FriOI GRGCYC 1 cut(s) 315
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 2 cut(s) 134, 164
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 135
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 2 cut(s) 169, 319
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 220
Hsp92II CATG 2 cut(s) 134, 164
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 101, 196, 270, 304
LweI GCATC 1 cut(s) 271
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 3 cut(s) 40, 259, 308
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 315
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 3 cut(s) 41, 100, 328
MluNI TGGCCA 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 5 cut(s) 48, 142, 187, 218, 315
Mox20I TGGCCA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 214
MseI TTAA 2 cut(s) 44, 219
MslI CAYNNNNRTG 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 214
MspCI CTTAAG 1 cut(s) 218
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 76, 220
NdeII GATC 1 cut(s) 165
NlaIII CATG 2 cut(s) 134, 164
NlaIV GGNNCC 2 cut(s) 181, 231
PfeI GAWTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 44
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 181, 231
PspPI GGNCC 2 cut(s) 151, 179
PspPPI RGGWCCY 1 cut(s) 151
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 44, 219
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 2 cut(s) 151, 179
SduI GDGCHC 1 cut(s) 315
SetI ASST 5 cut(s) 17, 72, 156, 225, 315
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 2 cut(s) 151, 179
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 218, 224
SmoI CTYRAG 2 cut(s) 218, 224
Sse9I AATT 3 cut(s) 41, 100, 328
SsiI CCGC 2 cut(s) 276, 292
SstI GAGCTC 1 cut(s) 315
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 175
TaqII GACCGA 1 cut(s) 110
TasI AATT 3 cut(s) 41, 100, 328
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 2 cut(s) 44, 219
Tru9I TTAA 2 cut(s) 44, 219
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 151, 179
VspI ATTAAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.