Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001760

Physical Location & Seq

Genomic Coordinates Reverse (-)

30071047 .. 30071677

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG150300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGATCCAGAAGCCATCGATCCATTGTTCTTTTGATGCGTTGAATGCTGTTGAGCAGCCAATTCAGAGATTGATTAAAATGTCAACTTCACTTGTTCCCCACTGTTGCTCTGGCAGTGATGATCAAGATCTTTCAGCAAAGGTAAAGTCAAAGCTCAATTTCACTTTCTGGAACCTGATGGAACCCTTGTTACTTGGGGAGATAGCAAAGACATGGGATGTATGTGCCCGAGTGGTGATCTCTGAATATGCAGAGCAGAATGGAGGAGGAAGCTTCAGTTCTAAGTATGACACCTGGGAAGACTGCGCCTTAGGGCTGCAGCTGCGTGAATCATTTTCTCTTGAGAATTATTATCTTGTCAAAGTTGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

125

Amino Acids

14.07

Weight (kDa)

4.92

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001760)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12010 FvH4_7g04352
malus_domestica	MD02G1272500.v1.1 MD02G1272700.v1.1 MD02G1272800.v1.1 MD03G1032600.v1.1 MD07G1041400.v1.1
prunus_persica	Prupe.2G048200_v2.0.a1 Prupe.2G048200_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1 Prupe.6G027400_v2.0.a1
pyrus_communis	pycom02g23330 pycom02g23360 pycom03g02610 pycom07g02890 pycom07g02900
rosa_chinensis	RchiOBHm_Chr4g0390581 RchiOBHm_Chr4g0409611
rosa_laevigata	RLG00000008544 RLG00000008548 RLG00000029895
rosa_multiflora	Rmu_co8074362.1_g000001 Rmu_sc0000652.1_g000023 Rmu_sc0001380.1_g000009 Rmu_sc0008771.1_g000002 Rmu_sc0028975.1_g000001 Rmu_sc0041275.1_g000001
rosa_roxburghii	Rroxscaffold_4G00321130 Rroxscaffold_5G00354140
rosa_rugosa	Rorug01G0079300.1 Rorug04G0095100 Rorug04G0095400
rosa_samantha	Rh1AG097800 Rh1AG097900 Rh1BG077900 Rh1DG058200 Rh1DG101100 Rh1DG101200 Rh4AG157100 Rh4BG156200 Rh4BG156500 Rh4CG036300 Rh4CG167000 Rh4DG150300 Rh4DG150700
rosa_wichuraiana	Rw4G012950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	3 cut(s)	157, 276, 325
AluI	AGCT	3 cut(s)	157, 276, 325
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	231
ApeKI	GCWGC	4 cut(s)	58, 319, 322, 325
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	16, 250
AvaI	CYCGRG	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	4 cut(s)	70, 306, 312, 334
BccI	CCATC	2 cut(s)	25, 175
BciT130I	CCWGG	1 cut(s)	298
BclI	TGATCA	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	320
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	4 cut(s)	59, 320, 323, 326
BlsI	GCNGC	4 cut(s)	60, 321, 324, 327
Bme1390I	CCNGG	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	176, 186
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	365
Bsa29I	ATCGAT	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	298
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	4 cut(s)	70, 306, 312, 334
BshVI	ATCGAT	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	231
BsmI	GAATGC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	6, 21, 124, 130, 240
BspDI	ATCGAT	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	176, 186
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	5 cut(s)	6, 21, 124, 130, 240
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	285, 313
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	5 cut(s)	9, 24, 127, 133, 243
BstMBI	GATC	5 cut(s)	6, 21, 124, 130, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 325
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	4 cut(s)	70, 306, 312, 334
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	313
BsuTUI	ATCGAT	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	103, 124
CfoI	GCGC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	20
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	6 cut(s)	16, 61, 157, 276, 319, 325
CviKI_1	RGCY	6 cut(s)	16, 61, 157, 276, 319, 325
DdeI	CTNAG	2 cut(s)	285, 313
DpnI	GATC	5 cut(s)	8, 23, 126, 132, 242
DpnII	GATC	5 cut(s)	6, 21, 124, 130, 240
Eco57I	CTGAAG	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	296
FaeI	CATG	1 cut(s)	219
FaiI	YATR	4 cut(s)	217, 226, 252, 291
FatI	CATG	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	59, 320, 323, 326
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	59, 320, 323, 326
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	4 cut(s)	59, 320, 323, 326
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	219
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	1 cut(s)	332
HphI	GGTGA	2 cut(s)	16, 250
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	69, 247
Hpy188III	TCNNGA	4 cut(s)	10, 128, 172, 344
Hpy8I	GTNNAC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	254, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 325
HpyF3I	CTNAG	2 cut(s)	285, 313
Hsp92II	CATG	1 cut(s)	219
HspAI	GCGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	6, 21, 124, 130, 240
LpnPI	CCDG	6 cut(s)	23, 99, 157, 191, 283, 310
Lsp1109I	GCAGC	4 cut(s)	70, 306, 312, 334
LweI	GCATC	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	5 cut(s)	8, 23, 126, 132, 242
MboI	GATC	5 cut(s)	6, 21, 124, 130, 240
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	4 cut(s)	63, 160, 349, 373
MnlI	CCTC	2 cut(s)	260, 263
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	325
MspR9I	CCNGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	47, 325
NdeII	GATC	5 cut(s)	6, 21, 124, 130, 240
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	176, 186
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	60, 321, 324, 327
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	176, 186
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	4 cut(s)	59, 320, 323, 326
Sau3AI	GATC	5 cut(s)	6, 21, 124, 130, 240
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	6 cut(s)	147, 159, 180, 278, 299, 327
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	63, 160, 349, 373
StyD4I	CCNGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	63, 160, 349, 373
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	2 cut(s)	110, 124
TseI	GCWGC	4 cut(s)	58, 319, 322, 325
TspRI	CASTG	2 cut(s)	110, 124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.