Rh1AG097800

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001760
Physical Location & Seq
Reverse (-)
17062086 .. 17062739
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG097800.1

Sequence Viewer

Length: 630 bp
ATGTCATCTAAAGCACCAAGTGCTTCTGCTTCAGTCATTGCTTCAGTAGCGTGTACGACTGATAGGATGAAAATGAAGCGCCCGAGAAGTACATTGCCAATTATTGATGCTGATTCAGAAAGTGGGATATGTCATATGATGAAAAGGCCCAGGCTTGAGGTGAACCAAACCCTCTTAGAGGAAATTAGAGCAATCAACAAACGACTAATAGACACTGTACTAGATATTAGTGACCAAGAGACTGCTCCATCAGTTAAGGATGGTGAACGAACTATTGTCAGGTGCTCCTTCGTTGGTGTGGCCATCAGTCCTAATCTGATGTCATCTCCAATGTTTCCACTCCAGCCTTTAAGATTGCTTGTGCCTGCAAACTATCCATTCAGCTCTCCTATATTTCTGGACAAGTTGACAGTGCAAGTCAGGGATGAGCTGGAAGATCTCTCAGCAAAGGTCATGTCAAAGCTAAGCCACTCTCTCCGGACCCTAGCGGAGCCTTTATCTCTTGGGGAGATAGCAAGGGTATGGGATACATGCGCCCGAGCGGTTGTCTGTGAATACGCACAACAGTCTGGGGGAGGAAGCTTCAGTTCCAAGTATGGAACCTGGGAAGATTTCCTCACTGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

209

Amino Acids

22.95

Weight (kDa)

6.74

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med15_C PF21539 113 - 180 5.8e-06 ARC105/Med15 mediator subunit C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 477
AciI CCGC 2 cut(s) 488, 542
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 3 cut(s) 15, 27, 568
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 3 cut(s) 55, 91, 219
AfiI CCNNNNNNNGG 1 cut(s) 178
AjnI CCWGG 2 cut(s) 149, 602
AluBI AGCT 4 cut(s) 384, 430, 463, 582
AluI AGCT 4 cut(s) 384, 430, 463, 582
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 2 cut(s) 82, 537
Aor13HI TCCGGA 1 cut(s) 477
AoxI GGCC 2 cut(s) 146, 300
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 2 cut(s) 81, 536
AspS9I GGNCC 2 cut(s) 147, 480
AsuHPI GGTGA 2 cut(s) 172, 275
AvaI CYCGRG 2 cut(s) 82, 537
AvaII GGWCC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 287
BccI CCATC 3 cut(s) 254, 256, 311
BciT130I CCWGG 2 cut(s) 151, 604
BciVI GTATCC 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 221, 485
BfoI RGCGCY 1 cut(s) 82
BfuI GTATCC 1 cut(s) 520
BglII AGATCT 1 cut(s) 436
BlpI GCTNAGC 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 151, 604
Bme18I GGWCC 1 cut(s) 480
BmeT110I CYCGRG 2 cut(s) 82, 537
BmgT120I GGNCC 2 cut(s) 147, 480
BmiI GGNNCC 3 cut(s) 482, 492, 601
BmrFI CCNGG 2 cut(s) 151, 604
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 326
Bpu1102I GCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 149, 603
BsaWI WCCGGW 1 cut(s) 477
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse3DI GCAATG 2 cut(s) 36, 92
BseAI TCCGGA 1 cut(s) 477
BseBI CCWGG 2 cut(s) 151, 604
BseDI CCNNGG 2 cut(s) 149, 603
BseGI GGATG 3 cut(s) 72, 265, 430
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 2 cut(s) 36, 92
BseMII CTCAG 1 cut(s) 456
BshFI GGCC 2 cut(s) 148, 302
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 2 cut(s) 82, 537
BsiSI CCGG 1 cut(s) 478
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 148, 302
BsoBI CYCGRG 2 cut(s) 82, 537
Bsp1286I GDGCHC 1 cut(s) 287
Bsp13I TCCGGA 1 cut(s) 477
Bsp143I GATC 1 cut(s) 436
Bsp1720I GCTNAGC 1 cut(s) 464
BspACI CCGC 2 cut(s) 488, 542
BspANI GGCC 2 cut(s) 148, 302
BspCNI CTCAG 1 cut(s) 455
BspEI TCCGGA 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 482, 492, 601
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 36, 92
BssECI CCNNGG 2 cut(s) 149, 603
BssMI GATC 1 cut(s) 436
Bst2UI CCWGG 2 cut(s) 151, 604
Bst4CI ACNGT 4 cut(s) 217, 412, 567, 622
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 3 cut(s) 175, 442, 464
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 3 cut(s) 72, 265, 430
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 2 cut(s) 81, 536
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 2 cut(s) 20, 47
BstNI CCWGG 2 cut(s) 151, 604
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 2 cut(s) 149, 602
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 2 cut(s) 148, 302
BtsCI GGATG 3 cut(s) 72, 265, 430
BtsIMutI CAGTG 3 cut(s) 213, 417, 618
Cac8I GCNNGC 1 cut(s) 366
CfoI GCGC 2 cut(s) 81, 536
Cfr13I GGNCC 2 cut(s) 147, 480
Csp6I GTAC 3 cut(s) 54, 90, 218
CviAII CATG 2 cut(s) 454, 531
CviQI GTAC 3 cut(s) 54, 90, 218
DdeI CTNAG 3 cut(s) 175, 442, 464
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 480
Eco57I CTGAAG 3 cut(s) 15, 27, 568
Eco88I CYCGRG 2 cut(s) 82, 537
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 149, 602
FaeI CATG 2 cut(s) 457, 534
FaiI YATR 8 cut(s) 130, 135, 137, 392, 455, 523, 532, 597
FatI CATG 2 cut(s) 453, 530
FauNDI CATATG 1 cut(s) 135
FokI GGATG 3 cut(s) 79, 272, 437
FspBI CTAG 2 cut(s) 221, 485
GlaI GCGC 2 cut(s) 80, 535
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 82
HaeIII GGCC 2 cut(s) 148, 302
HapII CCGG 1 cut(s) 478
HhaI GCGC 2 cut(s) 81, 536
Hin1II CATG 2 cut(s) 457, 534
Hin6I GCGC 2 cut(s) 79, 534
HinP1I GCGC 2 cut(s) 79, 534
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 478
HphI GGTGA 2 cut(s) 172, 275
Hpy166II GTNNAC 4 cut(s) 54, 163, 266, 408
Hpy188I TCNGA 2 cut(s) 118, 318
Hpy188III TCNNGA 2 cut(s) 398, 478
Hpy8I GTNNAC 4 cut(s) 54, 163, 266, 408
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 4 cut(s) 217, 412, 567, 622
HpyCH4V TGCA 2 cut(s) 368, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 47
HpyF3I CTNAG 3 cut(s) 175, 442, 464
Hsp92II CATG 2 cut(s) 457, 534
HspAI GCGC 2 cut(s) 79, 534
Kpn2I TCCGGA 1 cut(s) 477
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 3 cut(s) 250, 290, 490
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 221, 485
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 438
MbiI CCGCTC 1 cut(s) 542
MboI GATC 1 cut(s) 436
MboII GAAGA 2 cut(s) 446, 620
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 287
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 2 cut(s) 99, 183
MluNI TGGCCA 1 cut(s) 302
MnlI CCTC 5 cut(s) 151, 172, 182, 569, 626
Mox20I TGGCCA 1 cut(s) 302
MroI TCCGGA 1 cut(s) 477
MscI TGGCCA 1 cut(s) 302
MseI TTAA 3 cut(s) 255, 350, 628
Msp20I TGGCCA 1 cut(s) 302
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 2 cut(s) 151, 604
MvaI CCWGG 2 cut(s) 151, 604
MwoI GCNNNNNNNGC 2 cut(s) 20, 47
NdeI CATATG 1 cut(s) 135
NdeII GATC 1 cut(s) 436
NlaIII CATG 2 cut(s) 457, 534
NlaIV GGNNCC 3 cut(s) 482, 492, 601
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 534
PfeI GAWTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 149, 602
PspGI CCWGG 2 cut(s) 149, 602
PspN4I GGNNCC 3 cut(s) 482, 492, 601
PspPI GGNCC 2 cut(s) 147, 480
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 3 cut(s) 55, 91, 219
RsaNI GTAC 3 cut(s) 54, 90, 218
SaqAI TTAA 3 cut(s) 255, 350, 628
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 2 cut(s) 147, 480
ScrFI CCNGG 2 cut(s) 151, 604
SduI GDGCHC 1 cut(s) 287
SetI ASST 8 cut(s) 162, 284, 386, 432, 453, 465, 584, 605
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 99, 183
SsiI CCGC 2 cut(s) 488, 542
SspMI CTAG 2 cut(s) 221, 485
StyD4I CCNGG 2 cut(s) 149, 602
TaaI ACNGT 4 cut(s) 217, 412, 567, 622
TasI AATT 2 cut(s) 99, 183
TatI WGTACW 2 cut(s) 89, 217
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 3 cut(s) 255, 350, 628
Tru9I TTAA 3 cut(s) 255, 350, 628
TscAI CASTG 3 cut(s) 220, 417, 625
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 83, 89, 155
TspRI CASTG 3 cut(s) 220, 417, 625
VpaK11BI GGWCC 1 cut(s) 480
XagI CCTNNNNNAGG 1 cut(s) 176
XceI RCATGY 1 cut(s) 534
XspI CTAG 2 cut(s) 221, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.