Mediator of RNA polymerase II transcription subunit 15a-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| KIX_2 | PF16987 | 72 - 128 | 1.2e-09 | KIX domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 837 |
| AarI | CACCTGC | 3 cut(s) | 592, 1858, 3163 |
| AbsI | CCTCGAGG | 1 cut(s) | 2004 |
| Acc36I | ACCTGC | 7 cut(s) | 124, 431, 592, 766, 832, 1858, 3163 |
| AccB1I | GGYRCC | 2 cut(s) | 580, 3650 |
| AccIII | TCCGGA | 2 cut(s) | 1135, 3528 |
| AciI | CCGC | 6 cut(s) | 290, 623, 739, 2645, 3216, 3593 |
| AclWI | GGATC | 6 cut(s) | 248, 388, 791, 1023, 1221, 1700 |
| AcsI | RAATTY | 9 cut(s) | 296, 1519, 1656, 1805, 2170, 2200, 2512, 2649, 3136 |
| AdeI | CACNNNGTG | 1 cut(s) | 2762 |
| AfaI | GTAC | 3 cut(s) | 894, 1368, 2442 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1397, 1562, 1599, 2645, 3321 |
| AflII | CTTAAG | 1 cut(s) | 1304 |
| AflIII | ACRYGT | 1 cut(s) | 1171 |
| AgeI | ACCGGT | 1 cut(s) | 2475 |
| AjnI | CCWGG | 4 cut(s) | 88, 2220, 3014, 3653 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 948, 980, 3015, 3047 |
| Alw21I | GWGCWC | 6 cut(s) | 25, 1382, 1641, 1965, 2767, 3440 |
| Alw26I | GTCTC | 2 cut(s) | 501, 3260 |
| Alw44I | GTGCAC | 2 cut(s) | 1961, 2763 |
| AlwI | GGATC | 6 cut(s) | 248, 388, 791, 1023, 1221, 1700 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3403 |
| Ama87I | CYCGRG | 2 cut(s) | 2004, 2639 |
| Aor13HI | TCCGGA | 2 cut(s) | 1135, 3528 |
| AoxI | GGCC | 4 cut(s) | 191, 463, 1344, 3182 |
| ApaLI | GTGCAC | 2 cut(s) | 1961, 2763 |
| ApoI | RAATTY | 9 cut(s) | 296, 1519, 1656, 1805, 2170, 2200, 2512, 2649, 3136 |
| AseI | ATTAAT | 1 cut(s) | 1148 |
| AsiGI | ACCGGT | 1 cut(s) | 2475 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3372 |
| AspLEI | GCGC | 1 cut(s) | 2299 |
| AspS9I | GGNCC | 4 cut(s) | 591, 1345, 1583, 2930 |
| AsuC2I | CCSGG | 1 cut(s) | 1564 |
| AvaI | CYCGRG | 2 cut(s) | 2004, 2639 |
| AvaII | GGWCC | 3 cut(s) | 591, 1583, 2930 |
| AxyI | CCTNAGG | 2 cut(s) | 227, 3186 |
| BaeGI | GKGCMC | 4 cut(s) | 1833, 1965, 2767, 3589 |
| BanI | GGYRCC | 2 cut(s) | 580, 3650 |
| BanII | GRGCYC | 3 cut(s) | 25, 1382, 1641 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 229, 261 |
| BbsI | GAAGAC | 1 cut(s) | 3666 |
| Bbv12I | GWGCWC | 6 cut(s) | 25, 1382, 1641, 1965, 2767, 3440 |
| BbvCI | CCTCAGC | 2 cut(s) | 801, 3286 |
| BccI | CCATC | 7 cut(s) | 361, 819, 874, 2786, 3254, 3283, 3296 |
| BceAI | ACGGC | 2 cut(s) | 3191, 3329 |
| BciT130I | CCWGG | 4 cut(s) | 90, 2222, 3016, 3655 |
| BciVI | GTATCC | 1 cut(s) | 672 |
| BclI | TGATCA | 3 cut(s) | 490, 1003, 3481 |
| BcnI | CCSGG | 1 cut(s) | 1564 |
| BcoDI | GTCTC | 2 cut(s) | 501, 3260 |
| BfaI | CTAG | 7 cut(s) | 80, 195, 449, 2306, 2496, 2768, 2952 |
| BfmI | CTRYAG | 3 cut(s) | 1295, 3339, 3675 |
| BfrI | CTTAAG | 1 cut(s) | 1304 |
| BfuAI | ACCTGC | 7 cut(s) | 124, 431, 592, 766, 832, 1858, 3163 |
| BfuI | GTATCC | 1 cut(s) | 672 |
| BglII | AGATCT | 3 cut(s) | 82, 2948, 3487 |
| BlpI | GCTNAGC | 1 cut(s) | 2808 |
| Bme1390I | CCNGG | 5 cut(s) | 90, 1564, 2222, 3016, 3655 |
| Bme18I | GGWCC | 3 cut(s) | 591, 1583, 2930 |
| BmeT110I | CYCGRG | 2 cut(s) | 2004, 2639 |
| BmgT120I | GGNCC | 4 cut(s) | 591, 1345, 1583, 2930 |
| BmrFI | CCNGG | 5 cut(s) | 90, 1564, 2222, 3016, 3655 |
| BmsI | GCATC | 2 cut(s) | 850, 1533 |
| BoxI | GACNNNNGTC | 3 cut(s) | 596, 2308, 2422 |
| BpiI | GAAGAC | 1 cut(s) | 3666 |
| BpmI | CTGGAG | 3 cut(s) | 37, 582, 1922 |
| Bpu10I | CCTNAGC | 4 cut(s) | 612, 801, 2817, 3286 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2808 |
| BpuEI | CTTGAG | 3 cut(s) | 307, 483, 2348 |
| BpuMI | CCSGG | 1 cut(s) | 1564 |
| Bsa29I | ATCGAT | 1 cut(s) | 1695 |
| BsaBI | GATNNNNATC | 3 cut(s) | 750, 1113, 3486 |
| BsaJI | CCNNGG | 3 cut(s) | 2229, 2640, 3654 |
| BsaWI | WCCGGW | 3 cut(s) | 1135, 2475, 3528 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1397, 1562, 1599, 2645, 3321 |
| Bse118I | RCCGGY | 1 cut(s) | 2475 |
| Bse1I | ACTGG | 4 cut(s) | 20, 466, 913, 2684 |
| Bse21I | CCTNAGG | 2 cut(s) | 227, 3186 |
| Bse3DI | GCAATG | 5 cut(s) | 527, 1274, 1785, 2095, 3504 |
| Bse8I | GATNNNNATC | 3 cut(s) | 750, 1113, 3486 |
| BseAI | TCCGGA | 2 cut(s) | 1135, 3528 |
| BseBI | CCWGG | 4 cut(s) | 90, 2222, 3016, 3655 |
| BseCI | ATCGAT | 1 cut(s) | 1695 |
| BseDI | CCNNGG | 3 cut(s) | 2229, 2640, 3654 |
| BseGI | GGATG | 6 cut(s) | 161, 385, 734, 751, 951, 3583 |
| BseJI | GATNNNNATC | 3 cut(s) | 750, 1113, 3486 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1397, 1562, 1599, 2645, 3321 |
| BseMI | GCAATG | 5 cut(s) | 527, 1274, 1785, 2095, 3504 |
| BseNI | ACTGG | 4 cut(s) | 20, 466, 913, 2684 |
| BseRI | GAGGAG | 6 cut(s) | 927, 951, 1649, 1992, 2589, 3639 |
| BseSI | GKGCMC | 4 cut(s) | 1833, 1965, 2767, 3589 |
| BseYI | CCCAGC | 1 cut(s) | 1867 |
| BshFI | GGCC | 4 cut(s) | 193, 465, 1346, 3184 |
| BshNI | GGYRCC | 2 cut(s) | 580, 3650 |
| BshTI | ACCGGT | 1 cut(s) | 2475 |
| BshVI | ATCGAT | 1 cut(s) | 1695 |
| BsiHKAI | GWGCWC | 6 cut(s) | 25, 1382, 1641, 1965, 2767, 3440 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2004, 2639 |
| BsiSI | CCGG | 4 cut(s) | 1136, 1563, 2476, 3529 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1397, 1562, 1599, 2645, 3321 |
| BsmAI | GTCTC | 2 cut(s) | 501, 3260 |
| BsmI | GAATGC | 2 cut(s) | 97, 2806 |
| BsnI | GGCC | 4 cut(s) | 193, 465, 1346, 3184 |
| BsoBI | CYCGRG | 2 cut(s) | 2004, 2639 |
| Bsp1286I | GDGCHC | 8 cut(s) | 25, 1382, 1641, 1833, 1965, 2767, 3440, 3589 |
| Bsp13I | TCCGGA | 2 cut(s) | 1135, 3528 |
| Bsp1407I | TGTACA | 1 cut(s) | 1366 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2808 |
| BspACI | CCGC | 6 cut(s) | 290, 623, 739, 2645, 3216, 3593 |
| BspANI | GGCC | 4 cut(s) | 193, 465, 1346, 3184 |
| BspDI | ATCGAT | 1 cut(s) | 1695 |
| BspEI | TCCGGA | 2 cut(s) | 1135, 3528 |
| BspMAI | CTGCAG | 1 cut(s) | 3679 |
| BspMI | ACCTGC | 7 cut(s) | 124, 431, 592, 766, 832, 1858, 3163 |
| BspPI | GGATC | 6 cut(s) | 248, 388, 791, 1023, 1221, 1700 |
| BspT107I | GGYRCC | 2 cut(s) | 580, 3650 |
| BspTI | CTTAAG | 1 cut(s) | 1304 |
| BsrDI | GCAATG | 5 cut(s) | 527, 1274, 1785, 2095, 3504 |
| BsrFI | RCCGGY | 1 cut(s) | 2475 |
| BsrGI | TGTACA | 1 cut(s) | 1366 |
| BsrI | ACTGG | 4 cut(s) | 20, 466, 913, 2684 |
| BssAI | RCCGGY | 1 cut(s) | 2475 |
| BssECI | CCNNGG | 3 cut(s) | 2229, 2640, 3654 |
| Bst2UI | CCWGG | 4 cut(s) | 90, 2222, 3016, 3655 |
| Bst4CI | ACNGT | 7 cut(s) | 358, 598, 1801, 2046, 2061, 3031, 3244 |
| Bst6I | CTCTTC | 1 cut(s) | 969 |
| BstAFI | CTTAAG | 1 cut(s) | 1304 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1552, 1969, 2461, 2762 |
| BstAUI | TGTACA | 1 cut(s) | 1366 |
| BstC8I | GCNNGC | 6 cut(s) | 191, 1412, 1855, 1926, 2078, 3390 |
| BstEII | GGTNACC | 1 cut(s) | 2478 |
| BstF5I | GGATG | 6 cut(s) | 161, 385, 734, 751, 951, 3583 |
| BstHHI | GCGC | 1 cut(s) | 2299 |
| BstMAI | GTCTC | 2 cut(s) | 501, 3260 |
| BstNI | CCWGG | 4 cut(s) | 90, 2222, 3016, 3655 |
| BstNSI | RCATGY | 8 cut(s) | 558, 989, 1145, 1175, 1792, 2080, 2318, 2359 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 596, 2308, 2422 |
| BstPI | GGTNACC | 1 cut(s) | 2478 |
| BstSCI | CCNGG | 5 cut(s) | 88, 1562, 2220, 3014, 3653 |
| BstSFI | CTRYAG | 3 cut(s) | 1295, 3339, 3675 |
| BstSLI | GKGCMC | 4 cut(s) | 1833, 1965, 2767, 3589 |
| BstV2I | GAAGAC | 1 cut(s) | 3666 |
| BstX2I | RGATCY | 4 cut(s) | 82, 253, 2948, 3487 |
| BstYI | RGATCY | 4 cut(s) | 82, 253, 2948, 3487 |
| Bsu15I | ATCGAT | 1 cut(s) | 1695 |
| Bsu36I | CCTNAGG | 2 cut(s) | 227, 3186 |
| BsuI | GTATCC | 1 cut(s) | 672 |
| BsuRI | GGCC | 4 cut(s) | 193, 465, 1346, 3184 |
| BsuTUI | ATCGAT | 1 cut(s) | 1695 |
| BtgZI | GCGATG | 1 cut(s) | 3319 |
| BtsCI | GGATG | 6 cut(s) | 161, 385, 734, 751, 951, 3583 |
| BveI | ACCTGC | 7 cut(s) | 124, 431, 592, 766, 832, 1858, 3163 |
| Cac8I | GCNNGC | 6 cut(s) | 191, 1412, 1855, 1926, 2078, 3390 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3403 |
| CfoI | GCGC | 1 cut(s) | 2299 |
| Cfr10I | RCCGGY | 1 cut(s) | 2475 |
| Cfr13I | GGNCC | 4 cut(s) | 591, 1345, 1583, 2930 |
| ClaI | ATCGAT | 1 cut(s) | 1695 |
| CseI | GACGC | 3 cut(s) | 1403, 2459, 3041 |
| CsiI | ACCWGGT | 1 cut(s) | 2220 |
| Csp6I | GTAC | 3 cut(s) | 893, 1367, 2441 |
| CspAI | ACCGGT | 1 cut(s) | 2475 |
| CviQI | GTAC | 3 cut(s) | 893, 1367, 2441 |
| DraI | TTTAAA | 3 cut(s) | 1033, 1662, 2242 |
| DraIII | CACNNNGTG | 1 cut(s) | 2762 |
| Eam1104I | CTCTTC | 1 cut(s) | 969 |
| EarI | CTCTTC | 1 cut(s) | 969 |
| Ecl136II | GAGCTC | 3 cut(s) | 23, 1380, 1639 |
| Eco147I | AGGCCT | 1 cut(s) | 3184 |
| Eco24I | GRGCYC | 3 cut(s) | 25, 1382, 1641 |
| Eco32I | GATATC | 1 cut(s) | 223 |
| Eco47I | GGWCC | 3 cut(s) | 591, 1583, 2930 |
| Eco53kI | GAGCTC | 3 cut(s) | 23, 1380, 1639 |
| Eco81I | CCTNAGG | 2 cut(s) | 227, 3186 |
| Eco88I | CYCGRG | 2 cut(s) | 2004, 2639 |
| Eco91I | GGTNACC | 1 cut(s) | 2478 |
| EcoICRI | GAGCTC | 3 cut(s) | 23, 1380, 1639 |
| EcoO65I | GGTNACC | 1 cut(s) | 2478 |
| EcoRI | GAATTC | 1 cut(s) | 1519 |
| EcoRII | CCWGG | 4 cut(s) | 88, 2220, 3014, 3653 |
| EcoRV | GATATC | 1 cut(s) | 223 |
| EcoT22I | ATGCAT | 3 cut(s) | 99, 875, 1794 |
| EcoT38I | GRGCYC | 3 cut(s) | 25, 1382, 1641 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 948, 980 |
| FauI | CCCGC | 3 cut(s) | 630, 746, 2638 |
| FbaI | TGATCA | 3 cut(s) | 490, 1003, 3481 |
| FokI | GGATG | 6 cut(s) | 168, 372, 721, 738, 938, 3590 |
| FriOI | GRGCYC | 3 cut(s) | 25, 1382, 1641 |
| FspBI | CTAG | 7 cut(s) | 80, 195, 449, 2306, 2496, 2768, 2952 |
| GlaI | GCGC | 1 cut(s) | 2298 |
| GsaI | CCCAGC | 1 cut(s) | 1871 |
| GsuI | CTGGAG | 3 cut(s) | 37, 582, 1922 |
| HaeIII | GGCC | 4 cut(s) | 193, 465, 1346, 3184 |
| HapII | CCGG | 4 cut(s) | 1136, 1563, 2476, 3529 |
| HgaI | GACGC | 3 cut(s) | 1403, 2459, 3041 |
| HhaI | GCGC | 1 cut(s) | 2299 |
| Hin6I | GCGC | 1 cut(s) | 2297 |
| HinP1I | GCGC | 1 cut(s) | 2297 |
| HincII | GTYRAC | 3 cut(s) | 1191, 2750, 2851 |
| HindII | GTYRAC | 3 cut(s) | 1191, 2750, 2851 |
| HindIII | AAGCTT | 2 cut(s) | 2335, 3631 |
| HpaI | GTTAAC | 1 cut(s) | 2851 |
| HpaII | CCGG | 4 cut(s) | 1136, 1563, 2476, 3529 |
| Hpy166II | GTNNAC | 9 cut(s) | 1191, 1963, 2053, 2218, 2370, 2636, 2750, 2765, 2851 |
| Hpy8I | GTNNAC | 9 cut(s) | 1191, 1963, 2053, 2218, 2370, 2636, 2750, 2765, 2851 |
| Hpy99I | CGWCG | 1 cut(s) | 2169 |
| HpyAV | CCTTC | 8 cut(s) | 255, 343, 1388, 1642, 1910, 2547, 3302, 3340 |
| HpyCH4III | ACNGT | 7 cut(s) | 358, 598, 1801, 2046, 2061, 3031, 3244 |
| HpyCH4IV | ACGT | 2 cut(s) | 1617, 2705 |
| HpySE526I | ACGT | 2 cut(s) | 1617, 2705 |
| HspAI | GCGC | 1 cut(s) | 2297 |
| Kpn2I | TCCGGA | 2 cut(s) | 1135, 3528 |
| Ksp22I | TGATCA | 3 cut(s) | 490, 1003, 3481 |
| KspAI | GTTAAC | 1 cut(s) | 2851 |
| LweI | GCATC | 2 cut(s) | 850, 1533 |
| MabI | ACCWGGT | 1 cut(s) | 2220 |
| MaeI | CTAG | 7 cut(s) | 80, 195, 449, 2306, 2496, 2768, 2952 |
| MaeII | ACGT | 2 cut(s) | 1617, 2705 |
| MfeI | CAATTG | 2 cut(s) | 471, 1385 |
| MflI | RGATCY | 4 cut(s) | 82, 253, 2948, 3487 |
| MhlI | GDGCHC | 8 cut(s) | 25, 1382, 1641, 1833, 1965, 2767, 3440, 3589 |
| MlyI | GAGTC | 7 cut(s) | 314, 989, 1186, 2243, 2318, 2339, 3143 |
| MmeI | TCCRAC | 1 cut(s) | 3013 |
| Mph1103I | ATGCAT | 3 cut(s) | 99, 875, 1794 |
| MroI | TCCGGA | 2 cut(s) | 1135, 3528 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3372 |
| MslI | CAYNNNNRTG | 5 cut(s) | 167, 390, 586, 1956, 2088 |
| MspA1I | CMGCKG | 1 cut(s) | 3680 |
| MspCI | CTTAAG | 1 cut(s) | 1304 |
| MspI | CCGG | 4 cut(s) | 1136, 1563, 2476, 3529 |
| MspR9I | CCNGG | 5 cut(s) | 90, 1564, 2222, 3016, 3655 |
| MunI | CAATTG | 2 cut(s) | 471, 1385 |
| Mva1269I | GAATGC | 2 cut(s) | 97, 2806 |
| MvaI | CCWGG | 4 cut(s) | 90, 2222, 3016, 3655 |
| NciI | CCSGG | 1 cut(s) | 1564 |
| NsiI | ATGCAT | 3 cut(s) | 99, 875, 1794 |
| NspI | RCATGY | 8 cut(s) | 558, 989, 1145, 1175, 1792, 2080, 2318, 2359 |
| PaeI | GCATGC | 1 cut(s) | 2080 |
| PaeR7I | CTCGAG | 1 cut(s) | 2004 |
| PaqCI | CACCTGC | 3 cut(s) | 592, 1858, 3163 |
| PceI | AGGCCT | 1 cut(s) | 3184 |
| PciI | ACATGT | 1 cut(s) | 1171 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3342 |
| PctI | GAATGC | 2 cut(s) | 97, 2806 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3372 |
| PfoI | TCCNGGA | 1 cut(s) | 1562 |
| PinAI | ACCGGT | 1 cut(s) | 2475 |
| PleI | GAGTC | 7 cut(s) | 314, 988, 1186, 2242, 2317, 2338, 3143 |
| PpsI | GAGTC | 7 cut(s) | 314, 988, 1186, 2242, 2317, 2338, 3143 |
| PscI | ACATGT | 1 cut(s) | 1171 |
| PshAI | GACNNNNGTC | 3 cut(s) | 596, 2308, 2422 |
| PshBI | ATTAAT | 1 cut(s) | 1148 |
| PsiI | TTATAA | 1 cut(s) | 837 |
| Psp124BI | GAGCTC | 3 cut(s) | 25, 1382, 1641 |
| Psp6I | CCWGG | 4 cut(s) | 88, 2220, 3014, 3653 |
| PspEI | GGTNACC | 1 cut(s) | 2478 |
| PspFI | CCCAGC | 1 cut(s) | 1867 |
| PspGI | CCWGG | 4 cut(s) | 88, 2220, 3014, 3653 |
| PspPI | GGNCC | 4 cut(s) | 591, 1345, 1583, 2930 |
| PspXI | VCTCGAGB | 1 cut(s) | 2004 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1309, 1341, 2208, 2240 |
| PstI | CTGCAG | 1 cut(s) | 3679 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3403 |
| PsuI | RGATCY | 4 cut(s) | 82, 253, 2948, 3487 |
| PvuII | CAGCTG | 1 cut(s) | 3680 |
| RsaI | GTAC | 3 cut(s) | 894, 1368, 2442 |
| RsaNI | GTAC | 3 cut(s) | 893, 1367, 2441 |
| RseI | CAYNNNNRTG | 5 cut(s) | 167, 390, 586, 1956, 2088 |
| SacI | GAGCTC | 3 cut(s) | 25, 1382, 1641 |
| Sau96I | GGNCC | 4 cut(s) | 591, 1345, 1583, 2930 |
| SchI | GAGTC | 7 cut(s) | 314, 989, 1186, 2243, 2318, 2339, 3143 |
| ScrFI | CCNGG | 5 cut(s) | 90, 1564, 2222, 3016, 3655 |
| SduI | GDGCHC | 8 cut(s) | 25, 1382, 1641, 1833, 1965, 2767, 3440, 3589 |
| SexAI | ACCWGGT | 1 cut(s) | 2220 |
| SfaNI | GCATC | 2 cut(s) | 850, 1533 |
| SfcI | CTRYAG | 3 cut(s) | 1295, 3339, 3675 |
| Sfr274I | CTCGAG | 1 cut(s) | 2004 |
| SinI | GGWCC | 3 cut(s) | 591, 1583, 2930 |
| SlaI | CTCGAG | 1 cut(s) | 2004 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 167, 390, 586, 1956, 2088 |
| SmlI | CTYRAG | 5 cut(s) | 322, 498, 1304, 2004, 2327 |
| SmoI | CTYRAG | 5 cut(s) | 322, 498, 1304, 2004, 2327 |
| SphI | GCATGC | 1 cut(s) | 2080 |
| SseBI | AGGCCT | 1 cut(s) | 3184 |
| SsiI | CCGC | 6 cut(s) | 290, 623, 739, 2645, 3216, 3593 |
| SspI | AATATT | 4 cut(s) | 550, 1673, 1908, 2740 |
| SspMI | CTAG | 7 cut(s) | 80, 195, 449, 2306, 2496, 2768, 2952 |
| SstI | GAGCTC | 3 cut(s) | 25, 1382, 1641 |
| StuI | AGGCCT | 1 cut(s) | 3184 |
| StyD4I | CCNGG | 5 cut(s) | 88, 1562, 2220, 3014, 3653 |
| TaaI | ACNGT | 7 cut(s) | 358, 598, 1801, 2046, 2061, 3031, 3244 |
| TaiI | ACGT | 2 cut(s) | 1620, 2708 |
| TaqI | TCGA | 5 cut(s) | 300, 1695, 2005, 3300, 3509 |
| TatI | WGTACW | 3 cut(s) | 892, 1366, 2440 |
| TspGWI | ACGGA | 4 cut(s) | 627, 1705, 2182, 3554 |
| Vha464I | CTTAAG | 1 cut(s) | 1304 |
| VneI | GTGCAC | 2 cut(s) | 1961, 2763 |
| VpaK11BI | GGWCC | 3 cut(s) | 591, 1583, 2930 |
| VspI | ATTAAT | 1 cut(s) | 1148 |
| XapI | RAATTY | 9 cut(s) | 296, 1519, 1656, 1805, 2170, 2200, 2512, 2649, 3136 |
| XbaI | TCTAGA | 2 cut(s) | 79, 2951 |
| XceI | RCATGY | 8 cut(s) | 558, 989, 1145, 1175, 1792, 2080, 2318, 2359 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 186 |
| XhoI | CTCGAG | 1 cut(s) | 2004 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3372 |
| XspI | CTAG | 7 cut(s) | 80, 195, 449, 2306, 2496, 2768, 2952 |
| Zsp2I | ATGCAT | 3 cut(s) | 99, 875, 1794 |