pycom03g02610

Mediator of RNA polymerase II transcription subunit 15a-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
1988013 .. 1992308
4296 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02610.7

Sequence Viewer

Length: 2697 bp
ATGGATACCAGCAATCAGAGGACTCCTCAAGCTGGAGAGCCCTCCATGGATTGGAGGAGCCGGCTATGGCCAAATGCAAGGCAAAGAGTTGTCAACAGGACAATTGAATTGTTGAGGAACCATCTTCCTGACTCTAGTCAAGCGGCATTACAAGAAGTCAAGAAAATTGCTATAAGCTTTGAGGAAACAGTTTACACTTCTGCCACTAGTAAGGTACTTCCACAACTCTCTTTGGCCGTAAATTTAATTCTTGATGTAAGGGTACTTACATATGTAATGCATTCTAAGTTTAGAGTGCCATGGACTGGATTTTCTGTGCAGTTGGATTATCAGAGCAAAATTAATCTGTATTTGCACACATTGGAGACCAATTCGCAGAATACAATGGCCAAATATTTGCAATTGAACTCTGGTAGTAATAGCAACAGGCCCCGTGATCCAGCGTCTTTTGGTATGCAACCCCAAGTGCTGAATCAAGGGCAATCACTCTTTATGGCGTTGTCAGCAAATCAATCTCAATCACACCAACAAGTGTTGGCACAGAACATTGAGAATGAAGTTCCACCTGCTGGAGTTCAAAGCTCTGCTGGCTTTTCATCTGCAATACCTACTTCTTCCGGTTTAACCCAGGCTCCTATTCCAAAAATAATTGGACAAATTTCAAACATGCAAAATATGTCTGGAACTTCACAGACCCTTGATATGATTTCTAATTCTCAAAGCCAAATGCAACAGATAGTTCCACAACAGCAGTGGCAGGAGCAAGGATATATCCCAAAACTTGTGCAATCTCCACTTGAACAGCAGCAACAGCAACCAACTCAGTCGCAGTCCTCTCAGAAATCTGTTAAGCACATATTAAATCCTATCAAACCTTCCGTAGTGAAATCATATCTATCTAGTCTTCAACAGAATCAACAATCTTCCATTCATCAGTCAACACAATCTATGCTTCAGCAGCATCCACAGTCAGTTCTCAGGGGTCCCCAACAAGCGAACAAGAGTACCTTGTCATTACAGAGTGGGGTTAATACGACACAGGCAATTGATTCCCTTCATTCGAGTTCTGGTATGCTTCAATACCAGCATATAAGACAAGATCAAGAAGAGCAAATGCATCGGAATCTACTCAGCCTACAATTTAAGCAGCAACAGATGCAGATGCTGGAATGGCAGCAGTATCAGCAGCGATCACAACAGCAAGCGAAGCTGTTGCAGTCACAGCACCAAGCCATGCAGCAGCAGCTACAGAAGCAGTTAGAGCCGCAAGAAAAGCAGAAGCTTCTGGTACAGCTGCAGGTGCATGAAGAACAAACACCAAAGGTTCATCAAATCCATGATGCAAACTTGAAGATGAGAGCGGGGATGGATGTTACGCCAAGAGTGGTTCTTCATCAACATACCTTCACAGATTCCCCTCAGCAGTTGAAAGCAGGATCTCCAGTTCCTACTTCCTCAACCACCCAACTCCCTCAGGTTGCATCTCCTCAAATTTTGCAACGTTCTTCTCGACAAGCTGACCAGCAGAATCTAGTGACTCGCCCAAAAGCTGGAATCCCTGGCCATTCTGCAAGTTCACCAATTGTCATCCCATCTCCTTCAACTCCCATGACTCCATCCCCGACGCCAGGGGATTCTGAGAAACCTTCCTCACTCTCAAATGCTGAGAATGTTGGACATCAACAAGCAACTGGTGTCGGAGCACTGGTCAAGTCTGTTGCCATTGGCACCCCTAGGGTATCAGCCTCTCCTTCACTTTCTGAAACTAGCAAACCAGATAATCCTCATGTTAATGCTTTGTCAACTGTCTCTAGCAATTCGAGTGTTACAGAGGAGCCTCTTGAGTGCTTAATTAAAGCGGTGAAATTGATGACACAAGATGCATGGATTTCCGCTATCAATGACATTAGCTCAGTGGTCAATATGATTGATATAATACCAGGGTCAGCACCAGGTAATGGATCTAGAGCTTCAGTTGGTGAGGATCTGGCTGCGATGACAAATTGTCGTCTGCAAGAAAGCAATGTTATGACTCGTGATGGAAGAAATGGGACTAAGAGAATGAGGTGCTCTTATAGTGATGTGCCCTTAAATGTTGTGTCATCTGCTGACAGTACGGATGATAGTTTCAAGCAGTTGACCGGTTCAGAGACATCTGACCTAGTGTCAGATGCAACATCTCGTATCAAGAGGCCTAGGACTGAGGTTAATCACGCTCTTTTGAAAGAAATAAGGGAAATAAATCAGTTGCTTATCAACACAGTTGTTAGCAATGATGAAGATGTTGATCCTAGTGCAGCAGCCACTGCTGAAGGGGATGAGGGAACCATCTTCAAGTGCTCTTTTGGAGCTGTGACTCTCAGTCCAAACTTGAAATCACAGTATGATTCAGGGAATATGTCAAAAATTCAGCCACTAAAACTGTTTGTTCCCACCAATTATCCCGAGTCCTCTCCGATACTCTTGGACAAGGTTCCAGTCGAAGTTAGCAAAGAGTGTGAAGATCTTTCTGTGAAGGCAAAGTCAAGGCTTAGCACATCTCTACGAAGCATTTCACAACCCATGTCGCTTGGGGAGATAGCAAAGACTTGGGATGTTTGTGCTCATGCAGTTATTTCGGAGCATGCGCAGCAGAGAGGTGGTGGAAGTTTCAGCTCAAGGTATGGAACATGGGAGAACTGCTTGAGCGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

899

Amino Acids

98.53

Weight (kDa)

8.04

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 574, 1288
Acc16I TGCGCA 1 cut(s) 2628
Acc36I ACCTGC 2 cut(s) 574, 1288
AccB1I GGYRCC 1 cut(s) 1727
AccB7I CCANNNNNTGG 5 cut(s) 51, 305, 569, 1550, 1958
AccBSI CCGCTC 1 cut(s) 1361
AciI CCGC 5 cut(s) 143, 1265, 1361, 1859, 1893
AclI AACGTT 1 cut(s) 1501
AclWI GGATC 5 cut(s) 431, 1444, 1969, 1992, 2282
AcoI YGGCCR 4 cut(s) 68, 234, 387, 1561
AcsI RAATTY 4 cut(s) 241, 657, 1491, 2406
AcuI CTGAAG 3 cut(s) 938, 1956, 2331
AcyI GRCGYC 1 cut(s) 1625
AfaI GTAC 5 cut(s) 216, 264, 1006, 1290, 2116
AfeI AGCGCT 1 cut(s) 2689
AfiI CCNNNNNNNGG 7 cut(s) 32, 51, 305, 569, 1550, 1628, 1958
AgeI ACCGGT 1 cut(s) 2141
AhdI GACNNNNNGTC 3 cut(s) 2004, 2164, 2361
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 5 cut(s) 627, 1558, 1627, 1939, 1951
AloI GAACNNNNNNTCC 2 cut(s) 1428, 1460
Alw21I GWGCWC 4 cut(s) 1705, 2072, 2342, 2605
Alw26I GTCTC 3 cut(s) 359, 1813, 2144
AlwI GGATC 5 cut(s) 431, 1444, 1969, 1992, 2282
AlwNI CAGNNNCTG 2 cut(s) 1165, 2306
Ama87I CYCGRG 1 cut(s) 2444
Aor51HI AGCGCT 1 cut(s) 2689
AoxI GGCC 6 cut(s) 68, 234, 387, 428, 1561, 2192
ApoI RAATTY 4 cut(s) 241, 657, 1491, 2406
AseI ATTAAT 1 cut(s) 342
AsiGI ACCGGT 1 cut(s) 2141
Asp700I GAANNNNTTC 1 cut(s) 2551
AspA2I CCTAGG 2 cut(s) 1733, 2195
AspLEI GCGC 2 cut(s) 2629, 2690
AspS9I GGNCC 2 cut(s) 429, 983
AsuHPI GGTGA 3 cut(s) 1569, 1873, 1991
AvaI CYCGRG 1 cut(s) 2444
AvaII GGWCC 1 cut(s) 983
AvrII CCTAGG 2 cut(s) 1733, 2195
AxyI CCTNAGG 1 cut(s) 1473
BaeGI GKGCMC 1 cut(s) 2088
BaeI ACNNNNGTAYC 2 cut(s) 988, 1021
BalI TGGCCA 3 cut(s) 70, 389, 1563
BanI GGYRCC 1 cut(s) 1727
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 2034
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 4 cut(s) 1705, 2072, 2342, 2605
BbvCI CCTCAGC 1 cut(s) 1419
BccI CCATC 6 cut(s) 129, 1360, 1600, 1624, 2033, 2336
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 6 cut(s) 1100, 1134, 1195, 1229, 2598, 2632
BciT130I CCWGG 5 cut(s) 629, 1560, 1629, 1941, 1953
BcoDI GTCTC 3 cut(s) 359, 1813, 2144
BcuI ACTAGT 1 cut(s) 206
BfmI CTRYAG 2 cut(s) 1247, 1295
BfoI RGCGCY 1 cut(s) 2691
BfuAI ACCTGC 2 cut(s) 574, 1288
BglII AGATCT 1 cut(s) 2503
BlnI CCTAGG 2 cut(s) 1733, 2195
BlpI GCTNAGC 1 cut(s) 2531
Bme1390I CCNGG 5 cut(s) 629, 1560, 1629, 1941, 1953
Bme18I GGWCC 1 cut(s) 983
BmeRI GACNNNNNGTC 3 cut(s) 2004, 2164, 2361
BmeT110I CYCGRG 1 cut(s) 2444
BmgT120I GGNCC 2 cut(s) 429, 983
BmrFI CCNGG 5 cut(s) 629, 1560, 1629, 1941, 1953
BmsI GCATC 8 cut(s) 970, 1126, 1146, 1152, 1330, 1490, 1870, 2161
BoxI GACNNNNGTC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 896
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 3 cut(s) 54, 591, 1425
Bpu10I CCTNAGC 1 cut(s) 1419
Bpu1102I GCTNAGC 1 cut(s) 2531
BpuEI CTTGAG 3 cut(s) 12, 1862, 2641
BsaBI GATNNNNATC 1 cut(s) 2286
BsaHI GRCGYC 1 cut(s) 1625
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 8 cut(s) 45, 299, 627, 1558, 1628, 1733, 1940, 2195
BsaWI WCCGGW 2 cut(s) 617, 2141
BsaXI ACNNNNNCTCC 4 cut(s) 616, 646, 1692, 1722
Bsc4I CCNNNNNNNGG 7 cut(s) 32, 51, 305, 569, 1550, 1628, 1958
Bse118I RCCGGY 2 cut(s) 60, 2141
Bse1I ACTGG 5 cut(s) 310, 1442, 1696, 1710, 2477
Bse21I CCTNAGG 1 cut(s) 1473
Bse3DI GCAATG 2 cut(s) 2029, 2278
Bse8I GATNNNNATC 1 cut(s) 2286
BseBI CCWGG 5 cut(s) 629, 1560, 1629, 1941, 1953
BseDI CCNNGG 8 cut(s) 45, 299, 627, 1558, 1628, 1733, 1940, 2195
BseGI GGATG 8 cut(s) 961, 1371, 1375, 1587, 1616, 2125, 2323, 2599
BseJI GATNNNNATC 1 cut(s) 2286
BseLI CCNNNNNNNGG 7 cut(s) 32, 51, 305, 569, 1550, 1628, 1958
BseMI GCAATG 2 cut(s) 2029, 2278
BseNI ACTGG 5 cut(s) 310, 1442, 1696, 1710, 2477
BseRI GAGGAG 4 cut(s) 15, 70, 1476, 1847
BseSI GKGCMC 1 cut(s) 2088
BsgI GTGCAG 2 cut(s) 338, 2316
BshFI GGCC 6 cut(s) 70, 236, 389, 430, 1563, 2194
BshNI GGYRCC 1 cut(s) 1727
BshTI ACCGGT 1 cut(s) 2141
BsiHKAI GWGCWC 4 cut(s) 1705, 2072, 2342, 2605
BsiHKCI CYCGRG 1 cut(s) 2444
BsiSI CCGG 3 cut(s) 61, 618, 2142
BslFI GGGAC 2 cut(s) 969, 2065
BslI CCNNNNNNNGG 7 cut(s) 32, 51, 305, 569, 1550, 1628, 1958
BsmAI GTCTC 3 cut(s) 359, 1813, 2144
BsmFI GGGAC 2 cut(s) 969, 2065
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 6 cut(s) 70, 236, 389, 430, 1563, 2194
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 2444
Bsp1286I GDGCHC 6 cut(s) 42, 1705, 2072, 2088, 2342, 2605
Bsp143I GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
Bsp1720I GCTNAGC 1 cut(s) 2531
Bsp19I CCATGG 2 cut(s) 45, 299
BspACI CCGC 5 cut(s) 143, 1265, 1361, 1859, 1893
BspANI GGCC 6 cut(s) 70, 236, 389, 430, 1563, 2194
BspMAI CTGCAG 1 cut(s) 1299
BspMI ACCTGC 2 cut(s) 574, 1288
BspPI GGATC 5 cut(s) 431, 1444, 1969, 1992, 2282
BspQI GCTCTTC 1 cut(s) 1101
BspT107I GGYRCC 1 cut(s) 1727
BspTNI GGTCTC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 1361
BsrDI GCAATG 2 cut(s) 2029, 2278
BsrFI RCCGGY 2 cut(s) 60, 2141
BsrI ACTGG 5 cut(s) 310, 1442, 1696, 1710, 2477
BssAI RCCGGY 2 cut(s) 60, 2141
BssECI CCNNGG 8 cut(s) 45, 299, 627, 1558, 1628, 1733, 1940, 2195
BssMI GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
BssNI GRCGYC 1 cut(s) 1625
BssSI CACGAG 1 cut(s) 2034
BssT1I CCWWGG 4 cut(s) 45, 299, 1733, 2195
Bst2BI CACGAG 1 cut(s) 2034
Bst2UI CCWGG 5 cut(s) 629, 1560, 1629, 1941, 1953
Bst4CI ACNGT 7 cut(s) 190, 969, 1807, 2114, 2263, 2382, 2424
Bst6I CTCTTC 1 cut(s) 1101
BstACI GRCGYC 1 cut(s) 1625
BstAPI GCANNNNNTGC 2 cut(s) 1156, 2306
BstC8I GCNNGC 4 cut(s) 62, 589, 1203, 2625
BstDSI CCRYGG 2 cut(s) 45, 299
BstF5I GGATG 8 cut(s) 961, 1371, 1375, 1587, 1616, 2125, 2323, 2599
BstH2I RGCGCY 1 cut(s) 2691
BstHHI GCGC 2 cut(s) 2629, 2690
BstKTI GATC 8 cut(s) 439, 1102, 1193, 1439, 1964, 1987, 2290, 2506
BstMAI GTCTC 3 cut(s) 359, 1813, 2144
BstMBI GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
BstNI CCWGG 5 cut(s) 629, 1560, 1629, 1941, 1953
BstNSI RCATGY 2 cut(s) 670, 2627
BstPAI GACNNNNGTC 1 cut(s) 135
BstSCI CCNGG 5 cut(s) 627, 1558, 1627, 1939, 1951
BstSFI CTRYAG 2 cut(s) 1247, 1295
BstSLI GKGCMC 1 cut(s) 2088
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 4 cut(s) 1436, 1961, 1984, 2503
BstYI RGATCY 4 cut(s) 1436, 1961, 1984, 2503
Bsu36I CCTNAGG 1 cut(s) 1473
BsuRI GGCC 6 cut(s) 70, 236, 389, 430, 1563, 2194
BtgI CCRYGG 2 cut(s) 45, 299
BtgZI GCGATG 1 cut(s) 2009
BtsCI GGATG 8 cut(s) 961, 1371, 1375, 1587, 1616, 2125, 2323, 2599
BtsI GCAGTG 2 cut(s) 758, 2304
BtsIMutI CAGTG 4 cut(s) 758, 1703, 1920, 2304
BveI ACCTGC 2 cut(s) 574, 1288
Cac8I GCNNGC 4 cut(s) 62, 589, 1203, 2625
CaiI CAGNNNCTG 2 cut(s) 1165, 2306
CfoI GCGC 2 cut(s) 2629, 2690
Cfr10I RCCGGY 2 cut(s) 60, 2141
Cfr13I GGNCC 2 cut(s) 429, 983
CseI GACGC 2 cut(s) 432, 1633
CsiI ACCWGGT 1 cut(s) 1951
Csp6I GTAC 5 cut(s) 215, 263, 1005, 1289, 2115
CspAI ACCGGT 1 cut(s) 2141
CspCI CAANNNNNGTGG 2 cut(s) 734, 769
CviQI GTAC 5 cut(s) 215, 263, 1005, 1289, 2115
DpnI GATC 8 cut(s) 438, 1101, 1192, 1438, 1963, 1986, 2289, 2505
DpnII GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
DriI GACNNNNNGTC 3 cut(s) 2004, 2164, 2361
EaeI YGGCCR 4 cut(s) 68, 234, 387, 1561
Eam1104I CTCTTC 1 cut(s) 1101
Eam1105I GACNNNNNGTC 3 cut(s) 2004, 2164, 2361
EarI CTCTTC 1 cut(s) 1101
Eco130I CCWWGG 4 cut(s) 45, 299, 1733, 2195
Eco147I AGGCCT 1 cut(s) 2194
Eco24I GRGCYC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 983
Eco47III AGCGCT 1 cut(s) 2689
Eco57I CTGAAG 3 cut(s) 938, 1956, 2331
Eco81I CCTNAGG 1 cut(s) 1473
Eco88I CYCGRG 1 cut(s) 2444
EcoO109I RGGNCCY 2 cut(s) 429, 983
EcoRII CCWGG 5 cut(s) 627, 1558, 1627, 1939, 1951
EcoT14I CCWWGG 4 cut(s) 45, 299, 1733, 2195
EcoT22I ATGCAT 3 cut(s) 282, 1119, 1885
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 4 cut(s) 45, 299, 1733, 2195
FalI AAGNNNNNCTT 2 cut(s) 992, 1024
FaqI GGGAC 2 cut(s) 969, 2065
FauI CCCGC 1 cut(s) 1354
FauNDI CATATG 1 cut(s) 271
FokI GGATG 8 cut(s) 948, 1378, 1382, 1574, 1603, 2132, 2330, 2606
FriOI GRGCYC 1 cut(s) 42
FspI TGCGCA 1 cut(s) 2628
GlaI GCGC 2 cut(s) 2628, 2689
GsuI CTGGAG 3 cut(s) 54, 591, 1425
HaeII RGCGCY 1 cut(s) 2691
HaeIII GGCC 6 cut(s) 70, 236, 389, 430, 1563, 2194
HapII CCGG 3 cut(s) 61, 618, 2142
HgaI GACGC 2 cut(s) 432, 1633
HhaI GCGC 2 cut(s) 2629, 2690
Hin1I GRCGYC 1 cut(s) 1625
Hin6I GCGC 2 cut(s) 2627, 2688
HinP1I GCGC 2 cut(s) 2627, 2688
HincII GTYRAC 4 cut(s) 94, 939, 1803, 2139
HindII GTYRAC 4 cut(s) 94, 939, 1803, 2139
HindIII AAGCTT 2 cut(s) 175, 1280
HpaII CCGG 3 cut(s) 61, 618, 2142
HphI GGTGA 3 cut(s) 1569, 1873, 1991
Hpy166II GTNNAC 6 cut(s) 94, 193, 939, 1577, 1803, 2139
Hpy8I GTNNAC 6 cut(s) 94, 193, 939, 1577, 1803, 2139
Hpy99I CGWCG 1 cut(s) 1627
HpyAV CCTTC 8 cut(s) 885, 1064, 1414, 1608, 1656, 1761, 2306, 2509
HpyCH4III ACNGT 7 cut(s) 190, 969, 1807, 2114, 2263, 2382, 2424
HpyCH4IV ACGT 1 cut(s) 1501
HpySE526I ACGT 1 cut(s) 1501
Hsp92I GRCGYC 1 cut(s) 1625
HspAI GCGC 2 cut(s) 2627, 2688
KflI GGGWCCC 1 cut(s) 983
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
LguI GCTCTTC 1 cut(s) 1101
LmnI GCTCC 7 cut(s) 57, 637, 760, 1700, 1834, 2348, 2620
LweI GCATC 8 cut(s) 970, 1126, 1146, 1152, 1330, 1490, 1870, 2161
MabI ACCWGGT 1 cut(s) 1951
MaeII ACGT 1 cut(s) 1501
MaeIII GTNAC 5 cut(s) 1218, 1372, 1534, 1825, 2353
MalI GATC 8 cut(s) 438, 1101, 1192, 1438, 1963, 1986, 2289, 2505
MbiI CCGCTC 1 cut(s) 1361
MboI GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
MfeI CAATTG 4 cut(s) 102, 401, 1044, 1581
MflI RGATCY 4 cut(s) 1436, 1961, 1984, 2503
MhlI GDGCHC 6 cut(s) 42, 1705, 2072, 2088, 2342, 2605
MlsI TGGCCA 3 cut(s) 70, 389, 1563
MluNI TGGCCA 3 cut(s) 70, 389, 1563
MlyI GAGTC 7 cut(s) 16, 125, 1531, 1606, 2026, 2350, 2456
MmeI TCCRAC 3 cut(s) 303, 1654, 1678
Mox20I TGGCCA 3 cut(s) 70, 389, 1563
Mph1103I ATGCAT 3 cut(s) 282, 1119, 1885
MroNI GCCGGC 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 2551
MscI TGGCCA 3 cut(s) 70, 389, 1563
MslI CAYNNNNRTG 1 cut(s) 1791
Msp20I TGGCCA 3 cut(s) 70, 389, 1563
MspA1I CMGCKG 1 cut(s) 1294
MspI CCGG 3 cut(s) 61, 618, 2142
MspR9I CCNGG 5 cut(s) 629, 1560, 1629, 1941, 1953
MunI CAATTG 4 cut(s) 102, 401, 1044, 1581
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 5 cut(s) 629, 1560, 1629, 1941, 1953
NaeI GCCGGC 1 cut(s) 62
NcoI CCATGG 2 cut(s) 45, 299
NdeI CATATG 1 cut(s) 271
NdeII GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
NgoMIV GCCGGC 1 cut(s) 60
NmuCI GTSAC 3 cut(s) 1218, 1534, 2353
NsbI TGCGCA 1 cut(s) 2628
NsiI ATGCAT 3 cut(s) 282, 1119, 1885
NspI RCATGY 2 cut(s) 670, 2627
PacI TTAATTAA 1 cut(s) 1854
PaeI GCATGC 1 cut(s) 2627
PaqCI CACCTGC 2 cut(s) 574, 1288
PceI AGGCCT 1 cut(s) 2194
PciSI GCTCTTC 1 cut(s) 1101
PcsI WCGNNNNNNNCGW 1 cut(s) 1507
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 2551
PfeI GAWTC 9 cut(s) 472, 913, 1049, 1123, 1412, 1528, 1554, 1634, 2387
PflMI CCANNNNNTGG 5 cut(s) 51, 305, 569, 1550, 1958
PinAI ACCGGT 1 cut(s) 2141
PleI GAGTC 7 cut(s) 16, 125, 1531, 1606, 2026, 2350, 2455
PpsI GAGTC 7 cut(s) 16, 125, 1531, 1606, 2026, 2350, 2455
PpuMI RGGWCCY 1 cut(s) 983
PshAI GACNNNNGTC 1 cut(s) 135
PshBI ATTAAT 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 1501
Psp5II RGGWCCY 1 cut(s) 983
Psp6I CCWGG 5 cut(s) 627, 1558, 1627, 1939, 1951
PspGI CCWGG 5 cut(s) 627, 1558, 1627, 1939, 1951
PspPI GGNCC 2 cut(s) 429, 983
PspPPI RGGWCCY 1 cut(s) 983
PstI CTGCAG 1 cut(s) 1299
PstNI CAGNNNCTG 2 cut(s) 1165, 2306
PsuI RGATCY 4 cut(s) 1436, 1961, 1984, 2503
PvuII CAGCTG 1 cut(s) 1294
RsaI GTAC 5 cut(s) 216, 264, 1006, 1290, 2116
RsaNI GTAC 5 cut(s) 215, 263, 1005, 1289, 2115
RseI CAYNNNNRTG 1 cut(s) 1791
SapI GCTCTTC 1 cut(s) 1101
Sau3AI GATC 8 cut(s) 436, 1099, 1190, 1436, 1961, 1984, 2287, 2503
Sau96I GGNCC 2 cut(s) 429, 983
SchI GAGTC 7 cut(s) 16, 125, 1531, 1606, 2026, 2350, 2456
ScrFI CCNGG 5 cut(s) 629, 1560, 1629, 1941, 1953
SduI GDGCHC 6 cut(s) 42, 1705, 2072, 2088, 2342, 2605
SexAI ACCWGGT 1 cut(s) 1951
SfaNI GCATC 8 cut(s) 970, 1126, 1146, 1152, 1330, 1490, 1870, 2161
SfcI CTRYAG 2 cut(s) 1247, 1295
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 1 cut(s) 1791
SmlI CTYRAG 4 cut(s) 27, 1841, 2656, 2683
SmoI CTYRAG 4 cut(s) 27, 1841, 2656, 2683
SpeI ACTAGT 1 cut(s) 206
SphI GCATGC 1 cut(s) 2627
SseBI AGGCCT 1 cut(s) 2194
SsiI CCGC 5 cut(s) 143, 1265, 1361, 1859, 1893
SspI AATATT 1 cut(s) 395
StuI AGGCCT 1 cut(s) 2194
StyD4I CCNGG 5 cut(s) 627, 1558, 1627, 1939, 1951
StyI CCWWGG 4 cut(s) 45, 299, 1733, 2195
TaaI ACNGT 7 cut(s) 190, 969, 1807, 2114, 2263, 2382, 2424
TaiI ACGT 1 cut(s) 1504
TaqI TCGA 4 cut(s) 1061, 1510, 1820, 2481
TauI GCSGC 2 cut(s) 146, 1267
TfiI GAWTC 9 cut(s) 472, 913, 1049, 1123, 1412, 1528, 1554, 1634, 2387
TscAI CASTG 4 cut(s) 758, 1710, 1920, 2311
TseFI GTSAC 3 cut(s) 1218, 1534, 2353
Tsp45I GTSAC 3 cut(s) 1218, 1534, 2353
TspDTI ATGAA 8 cut(s) 570, 585, 920, 1046, 1316, 1320, 1382, 2292
TspGWI ACGGA 2 cut(s) 868, 2132
TspRI CASTG 4 cut(s) 758, 1710, 1920, 2311
Van91I CCANNNNNTGG 5 cut(s) 51, 305, 569, 1550, 1958
VpaK11BI GGWCC 1 cut(s) 983
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 4 cut(s) 241, 657, 1491, 2406
XbaI TCTAGA 1 cut(s) 1964
XceI RCATGY 2 cut(s) 670, 2627
XcmI CCANNNNNNNNNTGG 1 cut(s) 750
XmaJI CCTAGG 2 cut(s) 1733, 2195
XmnI GAANNNNTTC 1 cut(s) 2551
Zsp2I ATGCAT 3 cut(s) 282, 1119, 1885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.