Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001964

Physical Location & Seq

Genomic Coordinates Reverse (-)

19430007 .. 19433246

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATTTTCCAGTGCTGGGTTTCCTTGTGTTAATTCTCCAACTTGTTGGTGGGATGCTTGCACGTGACATTTTCTATGATGAGAACTATGAAGTCAAATGGGGATTTGATCATTTCAAATCTCGGTATCAAGGGAGAGAAGTCGAGCTTTCCTTGGATAATAATTCGGGCGCAGGGTTTATATCCAAGCTAAGCTATGGTTCTGGGTTCTTTCACATGAGGATCAGATTACCAGAAGCCTGGAATACTGCTGATCTAACTTCAGGCGATGAACCTCATCAGGATGAGCTGGACTTTGAGCTTTTGGGAAGCAAACCCGGGGGGGAAAAATTATTGCTGACAAATGTTTTTATAGATGGTCAGGGCGGTAGAGAGGAAACCATGACATTTTGGTTTGACCCCACCACTGAGTATCATGACTACCAAATTCTTTGGAACCACCATCAAATTGTATTTTATGTTGACCAATTCCCAATTAGGATTTTCAAGAACAACAAAAAATTTGGAGTTCCCTACATATCAAAACCAATGAAAATACAAGCAAGCTTGTGGAACGCAGAGTGGGCAACTCGTGATGCAGATATAGATTGGAGATATGCACCTTTTAAAGCTCACTACCAAGGGTTTGACGTAAACGGCTGCACACCACAGAACTCCATCAAAGATTGTTATGGGCACAGATATTGGTGGAACAGTAGGAAGCATTGGGAACTTGACTCCAACGAACGACAAAAATACGAGGACATTAGAAGATTTTTGGTATATGACTATTGTTCAGCTGGTTTTCCAAGGAAACCAGAGTGCGATCTGAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009832 GO:0009987 GO:0010228 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0030243 GO:0032501 GO:0032502 GO:0042546 GO:0043170 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0046527 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051273 GO:0061458 GO:0071554 GO:0071669 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

273

Amino Acids

32.07

Weight (kDa)

5.49

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	27 - 198	1.5e-41	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25050 AT4G13080 AT4G13090
fragaria_vesca	FvH4_2g18760 FvH4_2g18761 FvH4_3g26030 FvH4_3g26030
malus_domestica	MD03G1093100.v1.1 MD05G1173300.v1.1 MD05G1173400.v1.1 MD05G1173600.v1.1
prunus_persica	Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G200900_v2.0.a1 Prupe.8G201000_v2.0.a1
pyrus_communis	pycom05g16020 pycom05g16030 pycom05g16040
rosa_chinensis	RchiOBHm_Chr5g0047321 RchiOBHm_Chr6g0284451 RchiOBHm_Chr6g0284461 RchiOBHm_Chr6g0284491
rosa_laevigata	RLG00000012742 RLG00000012743
rosa_roxburghii	Rroxscaffold_1G00034030 Rroxscaffold_7G00184670 Rroxscaffold_7G00184680 Rroxscaffold_7G00184690
rosa_rugosa	Rorug05G0235900 Rorug06G0163800
rosa_samantha	Rh5BG323400 Rh5CG350600 Rh5DG334400 Rh6AG276600 Rh6AG276900 Rh6BG276600 Rh6BG276700 Rh6CG278600 Rh6CG278700 Rh6CG278900 Rh6DG271000 Rh6DG271100 Rh6DG271300
rosa_wichuraiana	Rw6G023760 Rw6G023770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	426, 500
AcuI	CTGAAG	1 cut(s)	246
AcvI	CACGTG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	118, 487
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	8 cut(s)	148, 190, 195, 289, 301, 546, 611, 779
AluI	AGCT	8 cut(s)	148, 190, 195, 289, 301, 546, 611, 779
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	639
ApoI	RAATTY	2 cut(s)	426, 500
AspLEI	GCGC	1 cut(s)	173
AsuC2I	CCSGG	2 cut(s)	318, 319
AvaI	CYCGRG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	678
BauI	CACGAG	1 cut(s)	570
BbrPI	CACGTG	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	350, 450, 665
BceAI	ACGGC	1 cut(s)	652
BciT130I	CCWGG	1 cut(s)	241
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	318, 319
BisI	GCNGC	1 cut(s)	640
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	641
Bme1390I	CCNGG	3 cut(s)	241, 318, 319
BmeT110I	CYCGRG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	3 cut(s)	241, 318, 319
BmsI	GCATC	2 cut(s)	45, 565
Bpu1102I	GCTNAGC	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	318, 319
BsaAI	YACGTR	1 cut(s)	65
BsaJI	CCNNGG	5 cut(s)	153, 317, 318, 619, 788
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	5 cut(s)	153, 317, 318, 619, 788
BseGI	GGATG	2 cut(s)	60, 289
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	678
BseXI	GCAGC	1 cut(s)	626
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	4 cut(s)	109, 222, 253, 805
Bsp1720I	GCTNAGC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	437
BspPI	GGATC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	5 cut(s)	153, 317, 318, 619, 788
BssMI	GATC	4 cut(s)	109, 222, 253, 805
BssSI	CACGAG	1 cut(s)	570
BssT1I	CCWWGG	3 cut(s)	153, 619, 788
Bst2BI	CACGAG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	60, 544
BstDEI	CTNAG	2 cut(s)	191, 408
BstF5I	GGATG	2 cut(s)	60, 289
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	112, 225, 256, 808
BstMBI	GATC	4 cut(s)	109, 222, 253, 805
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	239, 316, 317
BstSLI	GKGCMC	1 cut(s)	678
BstV1I	GCAGC	1 cut(s)	626
BstXI	CCANNNNNNTGG	2 cut(s)	47, 240
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	60, 289
BtsIMutI	CAGTG	2 cut(s)	18, 405
Cac8I	GCNNGC	2 cut(s)	60, 544
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	173
Cfr9I	CCCGGG	1 cut(s)	317
CviAII	CATG	3 cut(s)	217, 382, 416
DdeI	CTNAG	2 cut(s)	191, 408
DpnI	GATC	4 cut(s)	111, 224, 255, 807
DpnII	GATC	4 cut(s)	109, 222, 253, 805
DraI	TTTAAA	1 cut(s)	607
Eco130I	CCWWGG	3 cut(s)	153, 619, 788
Eco57I	CTGAAG	1 cut(s)	246
Eco72I	CACGTG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	3 cut(s)	153, 619, 788
ErhI	CCWWGG	3 cut(s)	153, 619, 788
FaeI	CATG	3 cut(s)	220, 385, 419
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	3 cut(s)	216, 381, 415
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	640
FokI	GGATG	2 cut(s)	67, 296
Fsp4HI	GCNGC	1 cut(s)	640
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	640
GsaI	CCCAGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	220, 385, 419
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	1 cut(s)	716
HpaII	CCGG	1 cut(s)	318
Hpy166II	GTNNAC	2 cut(s)	463, 634
Hpy188I	TCNGA	2 cut(s)	227, 810
Hpy188III	TCNNGA	4 cut(s)	281, 416, 487, 572
Hpy8I	GTNNAC	2 cut(s)	463, 634
HpyCH4III	ACNGT	1 cut(s)	695
HpyCH4IV	ACGT	2 cut(s)	64, 630
HpyCH4V	TGCA	4 cut(s)	62, 578, 599, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	191, 408
HpySE526I	ACGT	2 cut(s)	64, 630
Hsp92II	CATG	3 cut(s)	220, 385, 419
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 222, 253, 805
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	45, 565
MaeII	ACGT	2 cut(s)	64, 630
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	4 cut(s)	111, 224, 255, 807
MboI	GATC	4 cut(s)	109, 222, 253, 805
MboII	GAAGA	1 cut(s)	762
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	8 cut(s)	33, 163, 329, 426, 447, 467, 474, 500
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	2 cut(s)	64, 744
MnlI	CCTC	4 cut(s)	213, 285, 367, 733
MseI	TTAA	2 cut(s)	32, 606
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	241, 318, 319
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	563
NciI	CCSGG	2 cut(s)	318, 319
NdeII	GATC	4 cut(s)	109, 222, 253, 805
NlaIII	CATG	3 cut(s)	220, 385, 419
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	65
PagI	TCATGA	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	641
PleI	GAGTC	1 cut(s)	710
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	710
Ppu21I	YACGTR	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	239
PspCI	CACGTG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	32, 606
SatI	GCNGC	1 cut(s)	640
Sau3AI	GATC	4 cut(s)	109, 222, 253, 805
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	3 cut(s)	241, 318, 319
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	2 cut(s)	45, 565
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	8 cut(s)	33, 163, 329, 426, 447, 467, 474, 500
SsiI	CCGC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	239, 316, 317
StyI	CCWWGG	3 cut(s)	153, 619, 788
TaaI	ACNGT	1 cut(s)	695
TaiI	ACGT	2 cut(s)	67, 633
TaqI	TCGA	1 cut(s)	144
TasI	AATT	8 cut(s)	33, 163, 329, 426, 447, 467, 474, 500
Tru1I	TTAA	2 cut(s)	32, 606
Tru9I	TTAA	2 cut(s)	32, 606
TscAI	CASTG	2 cut(s)	18, 412
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	1 cut(s)	639
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	105, 285, 545
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	2 cut(s)	18, 412
XapI	RAATTY	2 cut(s)	426, 500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XmaI	CCCGGG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.