Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001376

Physical Location & Seq

Genomic Coordinates Reverse (-)

468342 .. 469031

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGAGAAGACCAAGCATAGGATTTTACCTTATGTGACCAAGATTTTGGTATGTTTTCTGGTTGGGACGTTGATTTGGCTGCTGAAGACAATACTTGTTAAGGTTCTTGCCTTGTATTTCCATGTCAACGCCTTCTTCGACCAGATCCAGGAGGCTTTGTTCAATCAGTATGTGTTTGAGACGCTATCTGGTCCCCCTATGTTTGAAAGGCAACACACACGGGAAGAGGACAAGGCCGCGGCAGCTGAGATTAGGGAGTTTCAGAAGGCCGGGGCTACTATGCCTCGTGGCCCCCCTCTATTTGAAAGGCAACTGTCACTAGAAGAGGAAAAAGCTGCGGCAGCTGAGATTCAGGAGTTTCAGAAAGCGGGGGCTGCTATGCCTCGCGAGCTCAGGGCAAGGAGTGGGAGAGCTGTAGGGAGTGGACACCAAAATAGCCCCAGAGTAGGGAAGAGTCCCGCGGTTTCTAGGCCAGCATCTGAGAAGCAAGATGAAGGTATCCCGGTTGATCGATCGCATAAGCTAAACCAAAAGAATGTGTCGGGTTGGAATATGAGAAAAATGGTAAACATCATCCGGCACGGGGCCTTAACCACTCTAGATGAACACATACTGAACTCTGAATCTCAAGCAAAAGATGCAGCCAGGAAGATATTTTTCAGAGTAGCCAAGCTGGGGTCTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0016020 GO:0044464 GO:0051179 GO:0051234 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

230

Amino Acids

25.79

Weight (kDa)

9.64

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78610 AT2G17010 AT2G17010
fragaria_vesca	FvH4_2g15780 FvH4_2g37870 FvH4_2g37870 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430
malus_domestica	MD05G1126700.v1.1 MD08G1006800.v1.1 MD08G1006900.v1.1 MD10G1129900.v1.1
prunus_persica	Prupe.1G358700_v2.0.a1 Prupe.8G170400_v2.0.a1
pyrus_communis	pycom05g12260 pycom08g00530 pycom08g00560 pycom08g00580
rosa_chinensis	RchiOBHm_Chr5g0071021 RchiOBHm_Chr6g0279131 RchiOBHm_Chr6g0303751
rosa_laevigata	RLG00000011049 RLG00000013165 RLG00000036184
rosa_multiflora	Rmu_co8207138.1_g000001 Rmu_co8395065.1_g000001 Rmu_sc0001141.1_g000023 Rmu_sc0012878.1_g000006 Rmu_sc0014203.1_g000020
rosa_roxburghii	Rroxscaffold_1G00010020 Rroxscaffold_7G00164430 Rroxscaffold_7G00189100
rosa_rugosa	Rorug05G0409800 Rorug05G0409900 Rorug05G0410000 Rorug06G0122500 Rorug06G0324500
rosa_samantha	Rh5AG466100 Rh5BG484300 Rh5CG508900 Rh5DG495700 Rh6AG231300 Rh6AG438800 Rh6BG236200 Rh6BG464300 Rh6CG238200 Rh6CG451100 Rh6DG229800 Rh6DG438000
rosa_wichuraiana	Rw5G043280 Rw6G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	242, 390, 464
AciI	CCGC	6 cut(s)	240, 242, 341, 371, 462, 464
AclWI	GGATC	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	6 cut(s)	21, 151, 449, 450, 586, 678
AgsI	TTSAA	3 cut(s)	166, 209, 308
AjnI	CCWGG	2 cut(s)	150, 647
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
AluBI	AGCT	7 cut(s)	248, 338, 347, 394, 416, 526, 676
AluI	AGCT	7 cut(s)	248, 338, 347, 394, 416, 526, 676
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	5 cut(s)	237, 270, 292, 473, 588
ApeKI	GCWGC	6 cut(s)	82, 245, 338, 344, 377, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AspS9I	GGNCC	3 cut(s)	194, 293, 588
AsuC2I	CCSGG	2 cut(s)	274, 506
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	17, 95
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	6 cut(s)	69, 257, 325, 356, 364, 656
BciT130I	CCWGG	2 cut(s)	152, 649
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	2 cut(s)	274, 506
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	3 cut(s)	323, 471, 602
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	9 cut(s)	83, 240, 243, 246, 339, 342, 345, 378, 645
BlsI	GCNGC	9 cut(s)	84, 241, 244, 247, 340, 343, 346, 379, 646
Bme1390I	CCNGG	4 cut(s)	152, 274, 506, 649
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	194, 293, 588
BmiI	GGNNCC	3 cut(s)	196, 295, 589
BmrFI	CCNGG	4 cut(s)	152, 274, 506, 649
BmsI	GCATC	2 cut(s)	488, 631
BpiI	GAAGAC	2 cut(s)	17, 95
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	615
BpuMI	CCSGG	2 cut(s)	274, 506
Bsa29I	ATCGAT	1 cut(s)	514
BsaJI	CCNNGG	3 cut(s)	240, 273, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	6 cut(s)	21, 151, 449, 450, 586, 678
BseBI	CCWGG	2 cut(s)	152, 649
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	3 cut(s)	240, 273, 462
BseGI	GGATG	1 cut(s)	576
BseLI	CCNNNNNNNGG	6 cut(s)	21, 151, 449, 450, 586, 678
BseMII	CTCAG	4 cut(s)	240, 339, 409, 474
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	6 cut(s)	69, 257, 325, 356, 364, 656
BseYI	CCCAGC	1 cut(s)	676
Bsh1236I	CGCG	3 cut(s)	242, 390, 464
Bsh1285I	CGRYCG	1 cut(s)	518
BshFI	GGCC	5 cut(s)	239, 272, 294, 475, 590
BshVI	ATCGAT	1 cut(s)	514
BsiEI	CGRYCG	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	273, 506, 580
BslFI	GGGAC	3 cut(s)	82, 180, 444
BslI	CCNNNNNNNGG	6 cut(s)	21, 151, 449, 450, 586, 678
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	3 cut(s)	82, 180, 444
BsnI	GGCC	5 cut(s)	239, 272, 294, 475, 590
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	3 cut(s)	147, 511, 515
Bsp68I	TCGCGA	1 cut(s)	390
BspACI	CCGC	6 cut(s)	240, 242, 341, 371, 462, 464
BspANI	GGCC	5 cut(s)	239, 272, 294, 475, 590
BspCNI	CTCAG	4 cut(s)	241, 340, 408, 475
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	3 cut(s)	242, 390, 464
BspLI	GGNNCC	3 cut(s)	196, 295, 589
BspPI	GGATC	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	240, 273, 462
BssMI	GATC	3 cut(s)	147, 511, 515
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	152, 649
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	3 cut(s)	222, 321, 449
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	392, 477
BstDEI	CTNAG	4 cut(s)	249, 348, 395, 483
BstDSI	CCRYGG	2 cut(s)	240, 462
BstF5I	GGATG	1 cut(s)	576
BstFNI	CGCG	3 cut(s)	242, 390, 464
BstKTI	GATC	3 cut(s)	150, 514, 518
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	147, 511, 515
BstMCI	CGRYCG	1 cut(s)	518
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 344, 377, 391, 641
BstNI	CCWGG	2 cut(s)	152, 649
BstSCI	CCNGG	4 cut(s)	150, 272, 504, 647
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	3 cut(s)	242, 390, 464
BstV1I	GCAGC	6 cut(s)	69, 257, 325, 356, 364, 656
BstV2I	GAAGAC	2 cut(s)	17, 95
BstX2I	RGATCY	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	5 cut(s)	239, 272, 294, 475, 590
BsuTUI	ATCGAT	1 cut(s)	514
BtgI	CCRYGG	2 cut(s)	240, 462
BtsCI	GGATG	1 cut(s)	576
BtuMI	TCGCGA	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	392, 477
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	194, 293, 588
Cfr42I	CCGCGG	2 cut(s)	243, 465
ClaI	ATCGAT	1 cut(s)	514
CseI	GACGC	1 cut(s)	193
CviAII	CATG	1 cut(s)	125
DdeI	CTNAG	4 cut(s)	249, 348, 395, 483
DpnI	GATC	3 cut(s)	149, 513, 517
DpnII	GATC	3 cut(s)	147, 511, 515
Eam1104I	CTCTTC	3 cut(s)	222, 321, 449
EarI	CTCTTC	3 cut(s)	222, 321, 449
Ecl136II	GAGCTC	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	150, 647
EcoT38I	GRGCYC	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	1 cut(s)	128
FaqI	GGGAC	3 cut(s)	82, 180, 444
FatI	CATG	1 cut(s)	124
FauI	CCCGC	2 cut(s)	364, 469
Fnu4HI	GCNGC	9 cut(s)	83, 240, 243, 246, 339, 342, 345, 378, 645
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	9 cut(s)	83, 240, 243, 246, 339, 342, 345, 378, 645
FspBI	CTAG	3 cut(s)	323, 471, 602
GluI	GCNGC	9 cut(s)	83, 240, 243, 246, 339, 342, 345, 378, 645
GsaI	CCCAGC	1 cut(s)	680
HaeIII	GGCC	5 cut(s)	239, 272, 294, 475, 590
HapII	CCGG	3 cut(s)	273, 506, 580
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	352, 457, 626
HpaII	CCGG	3 cut(s)	273, 506, 580
Hpy166II	GTNNAC	3 cut(s)	130, 428, 571
Hpy188I	TCNGA	5 cut(s)	267, 366, 484, 625, 665
Hpy188III	TCNNGA	3 cut(s)	356, 389, 602
Hpy8I	GTNNAC	3 cut(s)	130, 428, 571
HpyAV	CCTTC	3 cut(s)	145, 262, 491
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	644
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 344, 377, 391, 641
HpyF3I	CTNAG	4 cut(s)	249, 348, 395, 483
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	128
KspI	CCGCGG	2 cut(s)	243, 465
Kzo9I	GATC	3 cut(s)	147, 511, 515
Lsp1109I	GCAGC	6 cut(s)	69, 257, 325, 356, 364, 656
LweI	GCATC	2 cut(s)	488, 631
MaeI	CTAG	3 cut(s)	323, 471, 602
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	2 cut(s)	37, 318
MalI	GATC	3 cut(s)	149, 513, 517
MboI	GATC	3 cut(s)	147, 511, 515
MboII	GAAGA	7 cut(s)	22, 100, 130, 239, 338, 466, 664
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	1 cut(s)	530
MnlI	CCTC	6 cut(s)	148, 223, 297, 309, 322, 396
MseI	TTAA	2 cut(s)	102, 593
MspA1I	CMGCKG	4 cut(s)	242, 248, 347, 464
MspI	CCGG	3 cut(s)	273, 506, 580
MspR9I	CCNGG	4 cut(s)	152, 274, 506, 649
MvaI	CCWGG	2 cut(s)	152, 649
MvnI	CGCG	3 cut(s)	242, 390, 464
MwoI	GCNNNNNNNGC	5 cut(s)	245, 344, 377, 391, 641
NciI	CCSGG	2 cut(s)	274, 506
NdeII	GATC	3 cut(s)	147, 511, 515
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	3 cut(s)	196, 295, 589
NmuCI	GTSAC	2 cut(s)	37, 318
NruI	TCGCGA	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	352, 626
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	9 cut(s)	84, 241, 244, 247, 340, 343, 346, 379, 646
Ple19I	CGATCG	1 cut(s)	518
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	150, 647
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	2 cut(s)	150, 647
PspN4I	GGNNCC	3 cut(s)	196, 295, 589
PspPI	GGNCC	3 cut(s)	194, 293, 588
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	147
PvuI	CGATCG	1 cut(s)	518
PvuII	CAGCTG	2 cut(s)	248, 347
RruI	TCGCGA	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	396
SacII	CCGCGG	2 cut(s)	243, 465
SaqAI	TTAA	2 cut(s)	102, 593
SatI	GCNGC	9 cut(s)	83, 240, 243, 246, 339, 342, 345, 378, 645
Sau3AI	GATC	3 cut(s)	147, 511, 515
Sau96I	GGNCC	3 cut(s)	194, 293, 588
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	4 cut(s)	152, 274, 506, 649
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	2 cut(s)	488, 631
SfcI	CTRYAG	1 cut(s)	417
Sfr303I	CCGCGG	2 cut(s)	243, 465
SgrBI	CCGCGG	2 cut(s)	243, 465
SinI	GGWCC	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
SsiI	CCGC	6 cut(s)	240, 242, 341, 371, 462, 464
SspMI	CTAG	3 cut(s)	323, 471, 602
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	4 cut(s)	150, 272, 504, 647
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	141, 514
TauI	GCSGC	3 cut(s)	242, 245, 344
TfiI	GAWTC	2 cut(s)	352, 626
Tru1I	TTAA	2 cut(s)	102, 593
Tru9I	TTAA	2 cut(s)	102, 593
TseFI	GTSAC	2 cut(s)	37, 318
TseI	GCWGC	6 cut(s)	82, 245, 338, 344, 377, 644
Tsp45I	GTSAC	2 cut(s)	37, 318
TspDTI	ATGAA	2 cut(s)	510, 621
TspGWI	ACGGA	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	601
XspI	CTAG	3 cut(s)	323, 471, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.