Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001376

Physical Location & Seq

Genomic Coordinates Forward (+)

56576874 .. 56581629

Gene Structure 4756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATGATGGAGTTGGCTGTGAGGAAACTACCAGTTCTCTCCTTCCCCAAGATTGATGTAAAGCCACAAGAACAAAGAAGAAGAGTATCTTTTGTATCTTCTGCTCTACCCGAAACAGTGGCTTCAGTGGCAATTGCTGCTACAGTTGTTGGTGCAGCAGCTACCATTCTTGTGAGGAGAAACAAAGCTGCAGAGGCAGCTGAGGTGCCTATGAAAGACTGTGAAGCCTGTGGTGGTTCTGGTATATGTCCTGAATGCAAAGGTGAAGGCTTTGTCCTTAAGAGACTGTCAGATGAAAGTGCTGAGCGGGCAAGATTAGCTTCTAAGAATGCAGCCACTCGATACACTGCAGGGCTTCCAAAGAAATGGAGCTACTGCACAAAGTGCTCTTCTGCCCGATCATGCCGTACCTGCGATGGCCGTGGAAAGATAGTTTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

147

Amino Acids

15.75

Weight (kDa)

9.56

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7895	PF25433	71 - 144	1.1e-40	Domain of unknown function (DUF7895)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78610 AT2G17010 AT2G17010
fragaria_vesca	FvH4_2g15780 FvH4_2g37870 FvH4_2g37870 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430
malus_domestica	MD05G1126700.v1.1 MD08G1006800.v1.1 MD08G1006900.v1.1 MD10G1129900.v1.1
prunus_persica	Prupe.1G358700_v2.0.a1 Prupe.8G170400_v2.0.a1
pyrus_communis	pycom05g12260 pycom08g00530 pycom08g00560 pycom08g00580
rosa_chinensis	RchiOBHm_Chr5g0071021 RchiOBHm_Chr6g0279131 RchiOBHm_Chr6g0303751
rosa_laevigata	RLG00000011049 RLG00000013165 RLG00000036184
rosa_multiflora	Rmu_co8207138.1_g000001 Rmu_co8395065.1_g000001 Rmu_sc0001141.1_g000023 Rmu_sc0012878.1_g000006 Rmu_sc0014203.1_g000020
rosa_roxburghii	Rroxscaffold_1G00010020 Rroxscaffold_7G00164430 Rroxscaffold_7G00189100
rosa_rugosa	Rorug05G0409800 Rorug05G0409900 Rorug05G0410000 Rorug06G0122500 Rorug06G0324500
rosa_samantha	Rh5AG466100 Rh5BG484300 Rh5CG508900 Rh5DG495700 Rh6AG231300 Rh6AG438800 Rh6BG236200 Rh6BG464300 Rh6CG238200 Rh6CG451100 Rh6DG229800 Rh6DG438000
rosa_wichuraiana	Rw5G043280 Rw6G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	205
AccBSI	CCGCTC	1 cut(s)	307
AciI	CCGC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	278
AluBI	AGCT	5 cut(s)	161, 188, 200, 320, 372
AluI	AGCT	5 cut(s)	161, 188, 200, 320, 372
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	6 cut(s)	137, 155, 158, 188, 197, 332
AsuHPI	GGTGA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	124, 167, 170, 175, 209, 344
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	2 cut(s)	390, 405
BcoDI	GTCTC	1 cut(s)	277
BfmI	CTRYAG	3 cut(s)	141, 189, 348
BfrI	CTTAAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	6 cut(s)	138, 156, 159, 189, 198, 333
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	6 cut(s)	139, 157, 160, 190, 199, 334
BmiI	GGNNCC	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	201
Bpu1102I	GCTNAGC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	421
BseMII	CTCAG	2 cut(s)	192, 294
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	6 cut(s)	124, 167, 170, 175, 209, 344
BsgI	GTGCAG	2 cut(s)	174, 361
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	277
BsmI	GAATGC	2 cut(s)	260, 334
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	398
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	193, 295
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	2 cut(s)	193, 352
BspMI	ACCTGC	1 cut(s)	419
BspQI	GCTCTTC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	205
BspTI	CTTAAG	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	1 cut(s)	398
Bst4CI	ACNGT	4 cut(s)	118, 145, 221, 288
Bst6I	CTCTTC	2 cut(s)	76, 394
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	2 cut(s)	137, 384
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	201, 303, 324
BstDSI	CCRYGG	1 cut(s)	421
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	8 cut(s)	128, 137, 194, 197, 308, 317, 384, 411
BstSFI	CTRYAG	3 cut(s)	141, 189, 348
BstV1I	GCAGC	6 cut(s)	124, 167, 170, 175, 209, 344
BstXI	CCANNNNNNTGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	123, 132, 345
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	1 cut(s)	402
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	3 cut(s)	201, 303, 324
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
DraIII	CACNNNGTG	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	76, 394
EarI	CTCTTC	2 cut(s)	76, 394
Eco57I	CTGAAG	1 cut(s)	108
FaeI	CATG	1 cut(s)	405
FaiI	YATR	4 cut(s)	212, 245, 247, 403
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 304, 336
FatI	CATG	1 cut(s)	401
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	6 cut(s)	138, 156, 159, 189, 198, 333
Fsp4HI	GCNGC	6 cut(s)	138, 156, 159, 189, 198, 333
GluI	GCNGC	6 cut(s)	138, 156, 159, 189, 198, 333
HaeIII	GGCC	1 cut(s)	420
Hin1II	CATG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	52, 260
HpyCH4III	ACNGT	4 cut(s)	118, 145, 221, 288
HpyCH4V	TGCA	6 cut(s)	155, 191, 258, 332, 350, 378
HpyF10VI	GCNNNNNNNGC	8 cut(s)	128, 137, 194, 197, 308, 317, 384, 411
HpyF3I	CTNAG	3 cut(s)	201, 303, 324
Hsp92II	CATG	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	398
LguI	GCTCTTC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	6 cut(s)	45, 225, 241, 264, 336, 424
Lsp1109I	GCAGC	6 cut(s)	124, 167, 170, 175, 209, 344
MalI	GATC	1 cut(s)	400
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	1 cut(s)	398
MboII	GAAGA	4 cut(s)	90, 90, 93, 381
MfeI	CAATTG	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	389
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	4 cut(s)	15, 168, 187, 196
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	2 cut(s)	260, 334
MwoI	GCNNNNNNNGC	8 cut(s)	128, 137, 194, 197, 308, 317, 384, 411
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	394
PctI	GAATGC	2 cut(s)	260, 334
PkrI	GCNGC	6 cut(s)	139, 157, 160, 190, 199, 334
PspN4I	GGNNCC	1 cut(s)	207
PstI	CTGCAG	2 cut(s)	193, 352
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	6 cut(s)	138, 156, 159, 189, 198, 333
Sau3AI	GATC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	389
SetI	ASST	8 cut(s)	163, 190, 202, 207, 265, 322, 374, 413
SfcI	CTRYAG	3 cut(s)	141, 189, 348
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	307
TaaI	ACNGT	4 cut(s)	118, 145, 221, 288
TaqI	TCGA	1 cut(s)	340
TasI	AATT	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	3 cut(s)	123, 132, 352
TseI	GCWGC	6 cut(s)	137, 155, 158, 188, 197, 332
TspDTI	ATGAA	2 cut(s)	227, 309
TspRI	CASTG	3 cut(s)	123, 132, 352
Vha464I	CTTAAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.