Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395065.1

Orthogroup ID

OG0001376

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1130

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395065.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1129 bp

atgaagtccgggatgttggggaaaggcggcggcggtgacgatgacgacgaggacccgtttttggaagaggatctgcctgatgagtacaagagggtaaaattagatgcattgactctgctccaatggcttagtttggttttgatcattggtgccttggtttgcacgctttctctaagagttttgaggcagaagcatctgtggaaattgaagttgtggaaatgggaggtgctgattttggtttcgatttgcgggaggctggtttcgggttgggtgataaagatcatggtgttcttcgtggaaaggaatttccttctgcgcaagagggtgttgtattttgtttatgggatcagaagggctgtgcagaactgtatttggcttggctttgttttgacggcttggcatttcatgctaatcaggaaggttgagcaggaaaccaatagcaaaatactagagtatgtgacgaaaggtttgctttgtctcttgatcggggttttgctatggttgttaaagaccctggttgtgaaggtgcttgcttcctctttccacgttagatcctactttgatcggattcaggacgcgctttttaatcagtatgtgatccaaactctctctgggcgtcccttgattgaggtacagaatgcggaggatgaagaagaaaggcttgctgaggaggttaggaagttacagaatgctggggcaactatgcctcctgacctcagatcaaatgcattcccttctgcgagaattgggagggcggttgggagtggctctgggagaagtgggaggttcattgctgcaagtggggcgcttgggggaaaaagtggcaagttttcaagaccaacaatgtccaagaagtcagaggaggctgcaattaccattgatcatttgcataggctcaatccaaaaaatgtatctgcttggaatatgaagaggctaatgaacattgttagaaaagggcatcttacgacactcgatgagcaaattctggattccagcgctcaggatgagggtgatactatgatcaaaagtgaagttgaggcaaaggctgcagctaaaaagatatttcgcaatgtggcacggcctggctcaaagtatgtttcaattccttcccattttagtgtttttgctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

376

Amino Acids

42.42

Weight (kDa)

9.64

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78610 AT2G17010 AT2G17010
fragaria_vesca	FvH4_2g15780 FvH4_2g37870 FvH4_2g37870 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430
malus_domestica	MD05G1126700.v1.1 MD08G1006800.v1.1 MD08G1006900.v1.1 MD10G1129900.v1.1
prunus_persica	Prupe.1G358700_v2.0.a1 Prupe.8G170400_v2.0.a1
pyrus_communis	pycom05g12260 pycom08g00530 pycom08g00560 pycom08g00580
rosa_chinensis	RchiOBHm_Chr5g0071021 RchiOBHm_Chr6g0279131 RchiOBHm_Chr6g0303751
rosa_laevigata	RLG00000011049 RLG00000013165 RLG00000036184
rosa_multiflora	Rmu_co8207138.1_g000001 Rmu_co8395065.1_g000001 Rmu_sc0001141.1_g000023 Rmu_sc0012878.1_g000006 Rmu_sc0014203.1_g000020
rosa_roxburghii	Rroxscaffold_1G00010020 Rroxscaffold_7G00164430 Rroxscaffold_7G00189100
rosa_rugosa	Rorug05G0409800 Rorug05G0409900 Rorug05G0410000 Rorug06G0122500 Rorug06G0324500
rosa_samantha	Rh5AG466100 Rh5BG484300 Rh5CG508900 Rh5DG495700 Rh6AG231300 Rh6AG438800 Rh6BG236200 Rh6BG464300 Rh6CG238200 Rh6CG451100 Rh6DG229800 Rh6DG438000
rosa_wichuraiana	Rw5G043280 Rw6G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	149
AccII	CGCG	1 cut(s)	578
AciI	CCGC	6 cut(s)	27, 30, 33, 249, 641, 755
AclWI	GGATC	4 cut(s)	78, 353, 546, 592
AcsI	RAATTY	2 cut(s)	304, 981
AcyI	GRCGYC	1 cut(s)	616
AfaI	GTAC	2 cut(s)	86, 633
AfeI	AGCGCT	1 cut(s)	997
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	208, 834, 1101
AjnI	CCWGG	2 cut(s)	513, 1081
AluBI	AGCT	1 cut(s)	1052
AluI	AGCT	1 cut(s)	1052
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	4 cut(s)	78, 353, 546, 592
Aor51HI	AGCGCT	1 cut(s)	997
AoxI	GGCC	1 cut(s)	1079
ApeKI	GCWGC	4 cut(s)	794, 866, 1046, 1049
ApoI	RAATTY	2 cut(s)	304, 981
ArsI	GACNNNNNNTTYG	2 cut(s)	451, 483
AspLEI	GCGC	4 cut(s)	318, 580, 808, 998
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	47, 283, 1022
AvaII	GGWCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	666
BbvI	GCAGC	4 cut(s)	781, 853, 1033, 1061
BceAI	ACGGC	2 cut(s)	408, 1094
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BciT130I	CCWGG	2 cut(s)	515, 1083
BclI	TGATCA	3 cut(s)	141, 880, 1020
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	1047
BfoI	RGCGCY	2 cut(s)	809, 999
BisI	GCNGC	6 cut(s)	28, 31, 795, 867, 1047, 1050
BlsI	GCNGC	6 cut(s)	29, 32, 796, 868, 1048, 1051
Bme1390I	CCNGG	3 cut(s)	10, 515, 1083
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	54, 151
BmrFI	CCNGG	3 cut(s)	10, 515, 1083
BmsI	GCATC	3 cut(s)	94, 202, 967
Bpu10I	CCTNAGC	2 cut(s)	666, 999
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	616
BsaJI	CCNNGG	2 cut(s)	153, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	789, 1075
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	515, 1083
BseDI	CCNNGG	2 cut(s)	153, 513
BseGI	GGATG	3 cut(s)	18, 652, 1009
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	2 cut(s)	789, 1075
BseMII	CTCAG	3 cut(s)	657, 730, 1013
BseRI	GAGGAG	2 cut(s)	683, 875
BseXI	GCAGC	4 cut(s)	781, 853, 1033, 1061
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	1081
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	603
BsmI	GAATGC	3 cut(s)	643, 694, 728
BsnI	GGCC	1 cut(s)	1081
BspACI	CCGC	6 cut(s)	27, 30, 33, 249, 641, 755
BspANI	GGCC	1 cut(s)	1081
BspCNI	CTCAG	3 cut(s)	658, 729, 1012
BspFNI	CGCG	1 cut(s)	578
BspLI	GGNNCC	2 cut(s)	54, 151
BspMAI	CTGCAG	1 cut(s)	1051
BspPI	GGATC	4 cut(s)	78, 353, 546, 592
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	2 cut(s)	789, 1075
BssECI	CCNNGG	2 cut(s)	153, 513
BssNI	GRCGYC	1 cut(s)	616
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	515, 1083
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	60, 923
BstACI	GRCGYC	1 cut(s)	616
BstAPI	GCANNNNNTGC	2 cut(s)	406, 1046
BstC8I	GCNNGC	3 cut(s)	164, 531, 663
BstDEI	CTNAG	5 cut(s)	128, 173, 666, 716, 999
BstF5I	GGATG	3 cut(s)	18, 652, 1009
BstFNI	CGCG	1 cut(s)	578
BstH2I	RGCGCY	2 cut(s)	809, 999
BstHHI	GCGC	4 cut(s)	318, 580, 808, 998
BstMAI	GTCTC	1 cut(s)	482
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 406, 803, 1046
BstNI	CCWGG	2 cut(s)	515, 1083
BstSCI	CCNGG	3 cut(s)	8, 513, 1081
BstSFI	CTRYAG	1 cut(s)	1047
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	4 cut(s)	781, 853, 1033, 1061
BstX2I	RGATCY	2 cut(s)	70, 551
BstYI	RGATCY	2 cut(s)	70, 551
BsuRI	GGCC	1 cut(s)	1081
BtsCI	GGATG	3 cut(s)	18, 652, 1009
Cac8I	GCNNGC	3 cut(s)	164, 531, 663
CfoI	GCGC	4 cut(s)	318, 580, 808, 998
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	2 cut(s)	584, 605
Csp6I	GTAC	2 cut(s)	85, 632
CviAII	CATG	2 cut(s)	283, 406
CviQI	GTAC	2 cut(s)	85, 632
DdeI	CTNAG	5 cut(s)	128, 173, 666, 716, 999
Eam1104I	CTCTTC	2 cut(s)	60, 923
EarI	CTCTTC	2 cut(s)	60, 923
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	997
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	513, 1081
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	2 cut(s)	109, 730
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	286, 409
FalI	AAGNNNNNCTT	6 cut(s)	456, 488, 645, 677, 945, 977
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	2 cut(s)	282, 405
FauI	CCCGC	1 cut(s)	242
FbaI	TGATCA	3 cut(s)	141, 880, 1020
Fnu4HI	GCNGC	6 cut(s)	28, 31, 795, 867, 1047, 1050
FokI	GGATG	3 cut(s)	25, 659, 1016
Fsp4HI	GCNGC	6 cut(s)	28, 31, 795, 867, 1047, 1050
FspBI	CTAG	1 cut(s)	449
FspI	TGCGCA	1 cut(s)	317
GlaI	GCGC	4 cut(s)	317, 579, 807, 997
GluI	GCNGC	6 cut(s)	28, 31, 795, 867, 1047, 1050
GsaI	CCCAGC	1 cut(s)	696
HaeII	RGCGCY	2 cut(s)	809, 999
HaeIII	GGCC	1 cut(s)	1081
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	2 cut(s)	584, 605
HhaI	GCGC	4 cut(s)	318, 580, 808, 998
Hin1I	GRCGYC	1 cut(s)	616
Hin1II	CATG	2 cut(s)	286, 409
Hin6I	GCGC	4 cut(s)	316, 578, 806, 996
HinP1I	GCGC	4 cut(s)	316, 578, 806, 996
HinfI	GANTC	3 cut(s)	112, 568, 989
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	47, 283, 1022
Hpy188I	TCNGA	4 cut(s)	350, 567, 719, 859
Hpy188III	TCNNGA	7 cut(s)	415, 481, 572, 710, 834, 986, 1001
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	320, 345, 412, 517, 744, 1116
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	8 cut(s)	107, 162, 361, 728, 797, 869, 889, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 406, 803, 1046
HpyF3I	CTNAG	5 cut(s)	128, 173, 666, 716, 999
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	616
Hsp92II	CATG	2 cut(s)	286, 409
HspAI	GCGC	4 cut(s)	316, 578, 806, 996
Ksp22I	TGATCA	3 cut(s)	141, 880, 1020
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	4 cut(s)	781, 853, 1033, 1061
LweI	GCATC	3 cut(s)	94, 202, 967
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	3 cut(s)	35, 457, 681
MboII	GAAGA	5 cut(s)	77, 283, 662, 665, 940
MflI	RGATCY	2 cut(s)	70, 551
MluCI	AATT	7 cut(s)	98, 203, 304, 744, 870, 981, 1101
MlyI	GAGTC	1 cut(s)	106
Mph1103I	ATGCAT	2 cut(s)	109, 730
MseI	TTAA	2 cut(s)	506, 585
MslI	CAYNNNNRTG	1 cut(s)	1116
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	3 cut(s)	10, 515, 1083
Mva1269I	GAATGC	3 cut(s)	643, 694, 728
MvaI	CCWGG	2 cut(s)	515, 1083
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	4 cut(s)	124, 406, 803, 1046
NciI	CCSGG	1 cut(s)	10
NlaIII	CATG	2 cut(s)	286, 409
NlaIV	GGNNCC	2 cut(s)	54, 151
NmuCI	GTSAC	2 cut(s)	35, 457
NsbI	TGCGCA	1 cut(s)	317
NsiI	ATGCAT	2 cut(s)	109, 730
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	3 cut(s)	643, 694, 728
PfeI	GAWTC	2 cut(s)	568, 989
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	29, 32, 796, 868, 1048, 1051
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	513, 1081
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	513, 1081
PspN4I	GGNNCC	2 cut(s)	54, 151
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	1051
PsuI	RGATCY	2 cut(s)	70, 551
RsaI	GTAC	2 cut(s)	86, 633
RsaNI	GTAC	2 cut(s)	85, 632
RseI	CAYNNNNRTG	1 cut(s)	1116
SaqAI	TTAA	2 cut(s)	506, 585
SatI	GCNGC	6 cut(s)	28, 31, 795, 867, 1047, 1050
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	10, 515, 1083
SfaNI	GCATC	3 cut(s)	94, 202, 967
SfcI	CTRYAG	1 cut(s)	1047
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	1116
Sse9I	AATT	7 cut(s)	98, 203, 304, 744, 870, 981, 1101
SsiI	CCGC	6 cut(s)	27, 30, 33, 249, 641, 755
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	3 cut(s)	8, 513, 1081
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	242, 972
TasI	AATT	7 cut(s)	98, 203, 304, 744, 870, 981, 1101
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	30, 33
TfiI	GAWTC	2 cut(s)	568, 989
Tru1I	TTAA	2 cut(s)	506, 585
Tru9I	TTAA	2 cut(s)	506, 585
TseFI	GTSAC	2 cut(s)	35, 457
TseI	GCWGC	4 cut(s)	794, 866, 1046, 1049
Tsp45I	GTSAC	2 cut(s)	35, 457
TspDTI	ATGAA	6 cut(s)	17, 394, 663, 778, 941, 953
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	304, 981
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XspI	CTAG	1 cut(s)	449
Zsp2I	ATGCAT	2 cut(s)	109, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.