Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001376

Physical Location & Seq

Genomic Coordinates Reverse (-)

40373472 .. 40378524

Gene Structure 5053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG238200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGGATTTCTCACTCAAGAAATCCTTCAAATCTCTTGGCTCCAGTAAACACATCTCTGCTGAAGCAGACCACGGCAGCCACGAGAAGCTCCCCATTCTACTGGATCACCACAACGAACAGCAAGCAATGAGCGCCGTCGATTCCTCCGACCGCCGCGAGGTCATCGTCAAGATCGACGAGGGCGGCGCTTCCTCCACCACCACTACAGAAGCCGACCCCGCGAAACGCGGCGCCGGGATTTGGAGGGAGTCCAGTATTGATTTCTGGAAGGACGACGGGAGCAATGCCGGCGCCGGCGGGGGTTTTGAGTTTGCTCAGAAGAAGAAGACGGCGGCGAAGACTGAGGAGGAGGAGGAGGAGGGGGAGGAGGATCCGCCGTCGAAGCTGATAGGGAGGTTCCTGCACAAGCAGAGAGCCTCCGGCGACTCGTCGTTGGACATGGATTTGGAGATGGCCGAGCTACGGCCGCAGGACTTGCCGCCGCTGGCGGAGTCTCCGAGGAACTCACGCATGTCGAGGGAGATCAAGGTGTCGTTCCAGTCGTTCCAGTCGCCGGCGTCGGACATCGCCGAGACCGAGTCTATTCGGCGGCGGCGCAAGGACCCCGACGACGAGGAACGACGTCGTAGCAGTCGACTGAGTGACGGCGGCGCCGACGTCGTTAGGTGCTCGTCGAACGCGTCGTTTAAGAGCAGGTCCGATTTGTTGAGGGTGAAGACGAGGTCTAGATTGATGGACCCGCCCGAGGGGTGGGACGAGGGCGCGGGTCGGGTCCCGAAATCGGGTATGATGAGGTCTGGGATGTTGGGCCGGGGCGGAGGTGACGATGAGGAGGACGACCCCTTTTTGGAGGAGGATTTGCCTGATGAGTACAAGAGGGCAAAGTTCAATGCAGTGACTCTGCTCCAGTGGATCAGTTTGGTTTTGATTATTGGGGCATTGGCTTGCACTCTTTCCATAAGAGTTCTGAGGGAGATGAATCTGTGGAAATTGAAGCTGTGGAAATGGGAGGTGCTGATTTTGGTTTCGATTTGTGGGAGGCTGGTTTCGGGTTGGATGATAAAAATTATGGTGTTCTTTGTGGAGAGGAACTTCATTTTGAGGAAGAGGGTGTTGTATTTTGTTTATGGGATCAGGAAGCCTGTTCAGAACTGTATTTGGCTTGGCCTTGTTTTGACGGGTTGGCATTTCTTGCTGATCAGGAAGGTTGAGAAGGAAACCAATGGTAGAATCCTTGAGTATGTGAGTAAAGTGTTGCTTTGTCTCTTGATTGGGGGTTTGATTTGGTTGGTGAAGACCCTGGTTGTAAAAGTGCTTGCTTCATCTTTCCATGTTAGATCGTATTTTGATCGGATTCAGGATGCGCTTTTTAATCAGTATGTGATCCAAACACTGTCGGGGCGGCCTTGGATTGAGATAAAAAATGCAGAGGATGAAGAGGAGAGACTTGCTGATGAGGTTAGGAAGCTACAGAATGCTGGGGCTAATATGCCTCCTGACCTCAGGGCAAGTGCATTTCCTTCTGGGACAACTGGGAAGGCAGTTGGGAATGGCGGCTCTGGTAGAAGTGGGCGGTTGATTGCTGCAAGTGGAGGGCTTGTGGGGAAGAGTGGCATGTTTTCAAAGCCACTTTCCAAGAAGTCAGGGGAGGTTGGGATCACAATTGATCACTTGCATAGGCTCAATCCAAAGAATGTGTCTGCTTGGAATATGAAGAGGCTAATGAATATAGTAAAACATGGGCATCTTACCACACTAGATGAGCAGATTCTGGATTCAACCAAGGATGAGGGTGAGGGTGATACTAAGATCAAAAGTGAAGTTGAGGCAAAGGCTGCCGCGAAAAAGATATTTCGCAATGTGGCTAGGCCTGGCTCCAAGCACATCTACCTGGAGGATTTGTTGCGTTTCATGCAAGAAGACGAGGCTTTAAAGACCATGAGTCTCTTTGAAGGGGCTTCTGACAGCAAGAGAATCAGCAAAACTTCCTTGAAAAATTGGGTGGTCAATTGCTTTAGAGAACGGAGAGCACTTGCTTTGACTCTAACTGACACCAAAACAGCGGTGAACAGACTTCGACGCGTGGTGGACGTATTAGTTAGCATTATTATTATAATTATATGGCTGCTTGTGCTGGATATTGTCACCAGAGCCAATATTGTTTATGCAACTTCTCAGCTTGTGATTGTGGCCTTTGTTTTTGGTAACTCATGCAAGACAGTCTTTGAAGCAGTCATATTTCTATTCGTGATGCACCCCTTTGACGTGGGAGATCGATGTGAAATTGAAGGAGTTCAGGTACATTTCCATCTCTGCATGTGTCACATTCTATTAAATTTTGTACATTTTTATTTCTGTGGTCTAAAAATTGTTTTATCAATGTCTCTCAGATGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

799

Amino Acids

89.81

Weight (kDa)

8.86

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78610 AT2G17010 AT2G17010
fragaria_vesca	FvH4_2g15780 FvH4_2g37870 FvH4_2g37870 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430
malus_domestica	MD05G1126700.v1.1 MD08G1006800.v1.1 MD08G1006900.v1.1 MD10G1129900.v1.1
prunus_persica	Prupe.1G358700_v2.0.a1 Prupe.8G170400_v2.0.a1
pyrus_communis	pycom05g12260 pycom08g00530 pycom08g00560 pycom08g00580
rosa_chinensis	RchiOBHm_Chr5g0071021 RchiOBHm_Chr6g0279131 RchiOBHm_Chr6g0303751
rosa_laevigata	RLG00000011049 RLG00000013165 RLG00000036184
rosa_multiflora	Rmu_co8207138.1_g000001 Rmu_co8395065.1_g000001 Rmu_sc0001141.1_g000023 Rmu_sc0012878.1_g000006 Rmu_sc0014203.1_g000020
rosa_roxburghii	Rroxscaffold_1G00010020 Rroxscaffold_7G00164430 Rroxscaffold_7G00189100
rosa_rugosa	Rorug05G0409800 Rorug05G0409900 Rorug05G0410000 Rorug06G0122500 Rorug06G0324500
rosa_samantha	Rh5AG466100 Rh5BG484300 Rh5CG508900 Rh5DG495700 Rh6AG231300 Rh6AG438800 Rh6BG236200 Rh6BG464300 Rh6CG238200 Rh6CG451100 Rh6DG229800 Rh6DG438000
rosa_wichuraiana	Rw5G043280 Rw6G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2114
AatII	GACGTC	2 cut(s)	625, 660
Acc36I	ACCTGC	1 cut(s)	684
AccB1I	GGYRCC	3 cut(s)	230, 290, 650
AccI	GTMKAC	1 cut(s)	634
AccII	CGCG	7 cut(s)	156, 221, 228, 680, 764, 1841, 2082
AclWI	GGATC	7 cut(s)	111, 365, 378, 920, 1139, 1378, 1664
AcoI	YGGCCR	2 cut(s)	453, 464
AcsI	RAATTY	1 cut(s)	2335
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	6 cut(s)	231, 291, 557, 622, 651, 657
AfaI	GTAC	3 cut(s)	872, 2301, 2343
AflIII	ACRYGT	2 cut(s)	678, 2080
AgsI	TTSAA	9 cut(s)	28, 889, 994, 1623, 1779, 1952, 1993, 2228, 2288
AhdI	GACNNNNNGTC	1 cut(s)	1941
AjiI	CACGTC	1 cut(s)	2266
AjnI	CCWGG	3 cut(s)	1299, 1870, 1890
AluBI	AGCT	6 cut(s)	88, 385, 460, 997, 1468, 2179
AluI	AGCT	6 cut(s)	88, 385, 460, 997, 1468, 2179
Alw21I	GWGCWC	2 cut(s)	671, 2032
Alw26I	GTCTC	6 cut(s)	498, 566, 1268, 1438, 1949, 2388
AlwI	GGATC	7 cut(s)	111, 365, 378, 920, 1139, 1378, 1664
AlwNI	CAGNNNCTG	1 cut(s)	1771
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	7 cut(s)	453, 464, 808, 1165, 1403, 1868, 2190
ApeKI	GCWGC	4 cut(s)	75, 1583, 1835, 2125
ApoI	RAATTY	1 cut(s)	2335
ArsI	GACNNNNNNTTYG	2 cut(s)	1682, 1714
Asp700I	GAANNNNTTC	2 cut(s)	23, 2292
AspLEI	GCGC	8 cut(s)	134, 188, 233, 293, 597, 653, 764, 1366
AspS9I	GGNCC	5 cut(s)	601, 696, 736, 772, 808
AsuC2I	CCSGG	2 cut(s)	235, 812
AsuHPI	GGTGA	8 cut(s)	98, 724, 833, 1303, 1805, 1811, 2077, 2137
AvaI	CYCGRG	1 cut(s)	743
AvaII	GGWCC	4 cut(s)	601, 696, 736, 772
AxyI	CCTNAGG	1 cut(s)	1502
BamHI	GGATCC	1 cut(s)	370
BanI	GGYRCC	3 cut(s)	230, 290, 650
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	5 cut(s)	332, 344, 722, 1301, 1926
Bbv12I	GWGCWC	2 cut(s)	671, 2032
BbvI	GCAGC	4 cut(s)	87, 1570, 1822, 2112
BccI	CCATC	4 cut(s)	445, 727, 2316, 2385
BceAI	ACGGC	6 cut(s)	88, 119, 345, 361, 479, 661
BciT130I	CCWGG	3 cut(s)	1301, 1872, 1892
BclI	TGATCA	2 cut(s)	1197, 1666
BcnI	CCSGG	2 cut(s)	235, 812
BcoDI	GTCTC	6 cut(s)	498, 566, 1268, 1438, 1949, 2388
BfaI	CTAG	3 cut(s)	726, 1757, 1866
BfmI	CTRYAG	2 cut(s)	204, 1469
BfoI	RGCGCY	5 cut(s)	135, 189, 234, 294, 654
BfuAI	ACCTGC	1 cut(s)	684
Bme1390I	CCNGG	5 cut(s)	235, 812, 1301, 1872, 1892
Bme18I	GGWCC	4 cut(s)	601, 696, 736, 772
BmeRI	GACNNNNNGTC	1 cut(s)	1941
BmeT110I	CYCGRG	1 cut(s)	743
BmgBI	CACGTC	1 cut(s)	2266
BmgT120I	GGNCC	5 cut(s)	601, 696, 736, 772, 808
BmrFI	CCNGG	5 cut(s)	235, 812, 1301, 1872, 1892
BmrI	ACTGGG	1 cut(s)	1542
BmsI	GCATC	3 cut(s)	1351, 1753, 2241
BmuI	ACTGGG	1 cut(s)	1542
BpiI	GAAGAC	5 cut(s)	332, 344, 722, 1301, 1926
BpmI	CTGGAG	3 cut(s)	25, 890, 1913
BpuEI	CTTGAG	1 cut(s)	1256
BpuMI	CCSGG	2 cut(s)	235, 812
Bsa29I	ATCGAT	1 cut(s)	2275
BsaHI	GRCGYC	6 cut(s)	231, 291, 557, 622, 651, 657
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	7 cut(s)	70, 497, 744, 811, 1299, 1406, 1782
BsaXI	ACNNNNNCTCC	6 cut(s)	1584, 1614, 1886, 1916, 2283, 2313
Bse118I	RCCGGY	3 cut(s)	287, 293, 553
Bse1I	ACTGG	7 cut(s)	42, 105, 252, 538, 547, 907, 1537
Bse21I	CCTNAGG	1 cut(s)	1502
Bse3DI	GCAATG	3 cut(s)	132, 289, 1864
BseBI	CCWGG	3 cut(s)	1301, 1872, 1892
BseCI	ATCGAT	1 cut(s)	2275
BseDI	CCNNGG	7 cut(s)	70, 497, 744, 811, 1299, 1406, 1782
BseGI	GGATG	5 cut(s)	807, 1062, 1366, 1438, 1792
BseMI	GCAATG	3 cut(s)	132, 289, 1864
BseMII	CTCAG	6 cut(s)	329, 333, 629, 959, 1516, 2189
BseNI	ACTGG	7 cut(s)	42, 105, 252, 538, 547, 907, 1537
BseRI	GAGGAG	9 cut(s)	359, 362, 365, 368, 371, 380, 845, 866, 1454
BseX3I	CGGCCG	1 cut(s)	464
BseXI	GCAGC	4 cut(s)	87, 1570, 1822, 2112
BseYI	CCCAGC	1 cut(s)	1478
BsgI	GTGCAG	1 cut(s)	386
Bsh1236I	CGCG	7 cut(s)	156, 221, 228, 680, 764, 1841, 2082
Bsh1285I	CGRYCG	2 cut(s)	151, 467
BshFI	GGCC	7 cut(s)	455, 466, 810, 1167, 1405, 1870, 2192
BshNI	GGYRCC	3 cut(s)	230, 290, 650
BshVI	ATCGAT	1 cut(s)	2275
BsiEI	CGRYCG	2 cut(s)	151, 467
BsiHKAI	GWGCWC	2 cut(s)	671, 2032
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	6 cut(s)	234, 288, 294, 420, 554, 811
BslFI	GGGAC	3 cut(s)	758, 767, 1540
BsmAI	GTCTC	6 cut(s)	498, 566, 1268, 1438, 1949, 2388
BsmFI	GGGAC	3 cut(s)	758, 767, 1540
BsmI	GAATGC	1 cut(s)	1480
BsnI	GGCC	7 cut(s)	455, 466, 810, 1167, 1405, 1870, 2192
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	671, 2032
Bsp1407I	TGTACA	1 cut(s)	2341
BspANI	GGCC	7 cut(s)	455, 466, 810, 1167, 1405, 1870, 2192
BspCNI	CTCAG	7 cut(s)	328, 334, 630, 960, 1515, 2188, 2400
BspDI	ATCGAT	1 cut(s)	2275
BspFNI	CGCG	7 cut(s)	156, 221, 228, 680, 764, 1841, 2082
BspMI	ACCTGC	1 cut(s)	684
BspPI	GGATC	7 cut(s)	111, 365, 378, 920, 1139, 1378, 1664
BspT107I	GGYRCC	3 cut(s)	230, 290, 650
BspTNI	GGTCTC	1 cut(s)	566
BsrDI	GCAATG	3 cut(s)	132, 289, 1864
BsrFI	RCCGGY	3 cut(s)	287, 293, 553
BsrGI	TGTACA	1 cut(s)	2341
BsrI	ACTGG	7 cut(s)	42, 105, 252, 538, 547, 907, 1537
BssAI	RCCGGY	3 cut(s)	287, 293, 553
BssECI	CCNNGG	7 cut(s)	70, 497, 744, 811, 1299, 1406, 1782
BssNI	GRCGYC	6 cut(s)	231, 291, 557, 622, 651, 657
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	2 cut(s)	1406, 1782
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	3 cut(s)	1301, 1872, 1892
Bst4CI	ACNGT	3 cut(s)	1154, 1395, 2221
Bst6I	CTCTTC	4 cut(s)	1100, 1431, 1601, 1709
BstACI	GRCGYC	6 cut(s)	231, 291, 557, 622, 651, 657
BstAPI	GCANNNNNTGC	3 cut(s)	475, 1192, 1835
BstAUI	TGTACA	1 cut(s)	2341
BstC8I	GCNNGC	7 cut(s)	123, 289, 295, 486, 555, 946, 1317
BstDEI	CTNAG	8 cut(s)	315, 342, 638, 968, 1502, 1806, 2175, 2387
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	5 cut(s)	807, 1062, 1366, 1438, 1792
BstFNI	CGCG	7 cut(s)	156, 221, 228, 680, 764, 1841, 2082
BstH2I	RGCGCY	5 cut(s)	135, 189, 234, 294, 654
BstHHI	GCGC	8 cut(s)	134, 188, 233, 293, 597, 653, 764, 1366
BstMAI	GTCTC	6 cut(s)	498, 566, 1268, 1438, 1949, 2388
BstMCI	CGRYCG	2 cut(s)	151, 467
BstNI	CCWGG	3 cut(s)	1301, 1872, 1892
BstNSI	RCATGY	3 cut(s)	514, 1618, 2320
BstSCI	CCNGG	5 cut(s)	233, 810, 1299, 1870, 1890
BstSFI	CTRYAG	2 cut(s)	204, 1469
BstUI	CGCG	7 cut(s)	156, 221, 228, 680, 764, 1841, 2082
BstV1I	GCAGC	4 cut(s)	87, 1570, 1822, 2112
BstV2I	GAAGAC	5 cut(s)	332, 344, 722, 1301, 1926
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	370
BstZI	CGGCCG	1 cut(s)	464
Bsu15I	ATCGAT	1 cut(s)	2275
Bsu36I	CCTNAGG	1 cut(s)	1502
BsuRI	GGCC	7 cut(s)	455, 466, 810, 1167, 1405, 1870, 2192
BsuTUI	ATCGAT	1 cut(s)	2275
BtgI	CCRYGG	1 cut(s)	70
BtgZI	GCGATG	1 cut(s)	550
BtrI	CACGTC	1 cut(s)	2266
BtsCI	GGATG	5 cut(s)	807, 1062, 1366, 1438, 1792
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	3 cut(s)	900, 914, 1391
BveI	ACCTGC	1 cut(s)	684
Cac8I	GCNNGC	7 cut(s)	123, 289, 295, 486, 555, 946, 1317
CaiI	CAGNNNCTG	1 cut(s)	1771
CfoI	GCGC	8 cut(s)	134, 188, 233, 293, 597, 653, 764, 1366
Cfr10I	RCCGGY	3 cut(s)	287, 293, 553
Cfr13I	GGNCC	5 cut(s)	601, 696, 736, 772, 808
ClaI	ATCGAT	1 cut(s)	2275
CseI	GACGC	3 cut(s)	546, 669, 2088
Csp6I	GTAC	3 cut(s)	871, 2300, 2342
CviAII	CATG	9 cut(s)	439, 511, 1331, 1615, 1739, 1912, 1939, 2211, 2317
CviQI	GTAC	3 cut(s)	871, 2300, 2342
DdeI	CTNAG	8 cut(s)	315, 342, 638, 968, 1502, 1806, 2175, 2387
DinI	GGCGCC	3 cut(s)	232, 292, 652
DraI	TTTAAA	1 cut(s)	1932
DriI	GACNNNNNGTC	1 cut(s)	1941
EaeI	YGGCCR	2 cut(s)	453, 464
EagI	CGGCCG	1 cut(s)	464
Eam1104I	CTCTTC	4 cut(s)	1100, 1431, 1601, 1709
Eam1105I	GACNNNNNGTC	1 cut(s)	1941
EarI	CTCTTC	4 cut(s)	1100, 1431, 1601, 1709
EciI	GGCGGA	3 cut(s)	363, 503, 831
EclXI	CGGCCG	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	1406, 1782
Eco147I	AGGCCT	1 cut(s)	1870
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	4 cut(s)	601, 696, 736, 772
Eco52I	CGGCCG	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	1502
Eco88I	CYCGRG	1 cut(s)	743
EcoO109I	RGGNCCY	2 cut(s)	601, 772
EcoRII	CCWGG	3 cut(s)	1299, 1870, 1890
EcoT14I	CCWWGG	2 cut(s)	1406, 1782
EgeI	GGCGCC	3 cut(s)	232, 292, 652
EheI	GGCGCC	3 cut(s)	232, 292, 652
ErhI	CCWWGG	2 cut(s)	1406, 1782
FaeI	CATG	9 cut(s)	442, 514, 1334, 1618, 1742, 1915, 1942, 2214, 2320
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 1242, 1274, 2207, 2239
FaqI	GGGAC	3 cut(s)	758, 767, 1540
FatI	CATG	9 cut(s)	438, 510, 1330, 1614, 1738, 1911, 1938, 2210, 2316
FauI	CCCGC	4 cut(s)	226, 290, 747, 757
FbaI	TGATCA	2 cut(s)	1197, 1666
FblI	GTMKAC	1 cut(s)	634
FokI	GGATG	5 cut(s)	814, 1069, 1373, 1445, 1799
FspBI	CTAG	3 cut(s)	726, 1757, 1866
GlaI	GCGC	8 cut(s)	133, 187, 232, 292, 596, 652, 763, 1365
GsaI	CCCAGC	1 cut(s)	1482
GsuI	CTGGAG	3 cut(s)	25, 890, 1913
HaeII	RGCGCY	5 cut(s)	135, 189, 234, 294, 654
HaeIII	GGCC	7 cut(s)	455, 466, 810, 1167, 1405, 1870, 2192
HapII	CCGG	6 cut(s)	234, 288, 294, 420, 554, 811
HgaI	GACGC	3 cut(s)	546, 669, 2088
HhaI	GCGC	8 cut(s)	134, 188, 233, 293, 597, 653, 764, 1366
Hin1I	GRCGYC	6 cut(s)	231, 291, 557, 622, 651, 657
Hin1II	CATG	9 cut(s)	442, 514, 1334, 1618, 1742, 1915, 1942, 2214, 2320
Hin6I	GCGC	8 cut(s)	132, 186, 231, 291, 595, 651, 762, 1364
HinP1I	GCGC	8 cut(s)	132, 186, 231, 291, 595, 651, 762, 1364
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HpaII	CCGG	6 cut(s)	234, 288, 294, 420, 554, 811
HphI	GGTGA	8 cut(s)	98, 724, 833, 1303, 1805, 1811, 2077, 2137
Hpy166II	GTNNAC	4 cut(s)	47, 635, 2068, 2089
Hpy8I	GTNNAC	4 cut(s)	47, 635, 2068, 2089
HpyAV	CCTTC	8 cut(s)	34, 262, 1198, 1207, 1530, 1531, 1946, 2282
HpyCH4III	ACNGT	3 cut(s)	1154, 1395, 2221
HpyCH4IV	ACGT	4 cut(s)	622, 657, 2091, 2265
HpyF3I	CTNAG	8 cut(s)	315, 342, 638, 968, 1502, 1806, 2175, 2387
HpySE526I	ACGT	4 cut(s)	622, 657, 2091, 2265
Hsp92I	GRCGYC	6 cut(s)	231, 291, 557, 622, 651, 657
Hsp92II	CATG	9 cut(s)	442, 514, 1334, 1618, 1742, 1915, 1942, 2214, 2320
HspAI	GCGC	8 cut(s)	132, 186, 231, 291, 595, 651, 762, 1364
KasI	GGCGCC	3 cut(s)	230, 290, 650
KflI	GGGWCCC	1 cut(s)	772
KroI	GCCGGC	3 cut(s)	287, 293, 553
KroNI	GCCGGC	3 cut(s)	289, 295, 555
Ksp22I	TGATCA	2 cut(s)	1197, 1666
LmnI	GCTCC	5 cut(s)	44, 93, 279, 909, 1880
Lsp1109I	GCAGC	4 cut(s)	87, 1570, 1822, 2112
LweI	GCATC	3 cut(s)	1351, 1753, 2241
MaeI	CTAG	3 cut(s)	726, 1757, 1866
MaeII	ACGT	4 cut(s)	622, 657, 2091, 2265
MaeIII	GTNAC	6 cut(s)	641, 821, 895, 2143, 2204, 2321
MfeI	CAATTG	2 cut(s)	1662, 2008
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	671, 2032
MluCI	AATT	9 cut(s)	989, 1065, 1662, 1996, 2008, 2115, 2283, 2335, 2367
MluI	ACGCGT	2 cut(s)	678, 2080
Mly113I	GGCGCC	3 cut(s)	231, 291, 651
MlyI	GAGTC	7 cut(s)	257, 419, 500, 587, 892, 1951, 2035
MmeI	TCCRAC	4 cut(s)	171, 414, 540, 1034
MreI	CGCCGGCG	2 cut(s)	293, 553
MroNI	GCCGGC	3 cut(s)	287, 293, 553
MroXI	GAANNNNTTC	2 cut(s)	23, 2292
MseI	TTAA	4 cut(s)	687, 1371, 1931, 2333
MspA1I	CMGCKG	2 cut(s)	484, 2063
MspI	CCGG	6 cut(s)	234, 288, 294, 420, 554, 811
MspR9I	CCNGG	5 cut(s)	235, 812, 1301, 1872, 1892
MunI	CAATTG	2 cut(s)	1662, 2008
Mva1269I	GAATGC	1 cut(s)	1480
MvaI	CCWGG	3 cut(s)	1301, 1872, 1892
MvnI	CGCG	7 cut(s)	156, 221, 228, 680, 764, 1841, 2082
NaeI	GCCGGC	3 cut(s)	289, 295, 555
NarI	GGCGCC	3 cut(s)	231, 291, 651
NciI	CCSGG	2 cut(s)	235, 812
NgoMIV	GCCGGC	3 cut(s)	287, 293, 553
NlaIII	CATG	9 cut(s)	442, 514, 1334, 1618, 1742, 1915, 1942, 2214, 2320
NmeAIII	GCCGAG	2 cut(s)	481, 595
NmuCI	GTSAC	5 cut(s)	641, 821, 895, 2143, 2321
NspI	RCATGY	3 cut(s)	514, 1618, 2320
PceI	AGGCCT	1 cut(s)	1870
PcsI	WCGNNNNNNNCGW	9 cut(s)	78, 144, 171, 539, 573, 631, 651, 677, 680
PctI	GAATGC	1 cut(s)	1480
PdiI	GCCGGC	3 cut(s)	289, 295, 555
PdmI	GAANNNNTTC	2 cut(s)	23, 2292
PfeI	GAWTC	7 cut(s)	140, 979, 1230, 1354, 1768, 1775, 1974
PflFI	GACNNNGTC	2 cut(s)	577, 721
PleI	GAGTC	7 cut(s)	256, 419, 499, 586, 892, 1950, 2035
PluTI	GGCGCC	3 cut(s)	234, 294, 654
PpsI	GAGTC	7 cut(s)	256, 419, 499, 586, 892, 1950, 2035
PpuMI	RGGWCCY	2 cut(s)	601, 772
PsiI	TTATAA	1 cut(s)	2114
Psp5II	RGGWCCY	2 cut(s)	601, 772
Psp6I	CCWGG	3 cut(s)	1299, 1870, 1890
PspFI	CCCAGC	1 cut(s)	1478
PspGI	CCWGG	3 cut(s)	1299, 1870, 1890
PspPI	GGNCC	5 cut(s)	601, 696, 736, 772, 808
PspPPI	RGGWCCY	2 cut(s)	601, 772
PstNI	CAGNNNCTG	1 cut(s)	1771
PsuI	RGATCY	1 cut(s)	370
PsyI	GACNNNGTC	2 cut(s)	577, 721
RsaI	GTAC	3 cut(s)	872, 2301, 2343
RsaNI	GTAC	3 cut(s)	871, 2300, 2342
SalI	GTCGAC	1 cut(s)	633
SaqAI	TTAA	4 cut(s)	687, 1371, 1931, 2333
Sau96I	GGNCC	5 cut(s)	601, 696, 736, 772, 808
SchI	GAGTC	7 cut(s)	257, 419, 500, 587, 892, 1951, 2035
ScrFI	CCNGG	5 cut(s)	235, 812, 1301, 1872, 1892
SduI	GDGCHC	2 cut(s)	671, 2032
SfaNI	GCATC	3 cut(s)	1351, 1753, 2241
SfcI	CTRYAG	2 cut(s)	204, 1469
SfoI	GGCGCC	3 cut(s)	232, 292, 652
SgrAI	CRCCGGYG	2 cut(s)	293, 553
SinI	GGWCC	4 cut(s)	601, 696, 736, 772
SmlI	CTYRAG	2 cut(s)	14, 1235
SmoI	CTYRAG	2 cut(s)	14, 1235
Sse9I	AATT	9 cut(s)	989, 1065, 1662, 1996, 2008, 2115, 2283, 2335, 2367
SseBI	AGGCCT	1 cut(s)	1870
SspDI	GGCGCC	3 cut(s)	230, 290, 650
SspI	AATATT	1 cut(s)	2158
SspMI	CTAG	3 cut(s)	726, 1757, 1866
StuI	AGGCCT	1 cut(s)	1870
StyD4I	CCNGG	5 cut(s)	233, 810, 1299, 1870, 1890
StyI	CCWWGG	2 cut(s)	1406, 1782
TaaI	ACNGT	3 cut(s)	1154, 1395, 2221
TaiI	ACGT	4 cut(s)	625, 660, 2094, 2268
TaqI	TCGA	9 cut(s)	138, 174, 380, 515, 634, 674, 1028, 2077, 2275
TaqII	GACCGA	1 cut(s)	590
TasI	AATT	9 cut(s)	989, 1065, 1662, 1996, 2008, 2115, 2283, 2335, 2367
TatI	WGTACW	2 cut(s)	870, 2341
TfiI	GAWTC	7 cut(s)	140, 979, 1230, 1354, 1768, 1775, 1974
Tru1I	TTAA	4 cut(s)	687, 1371, 1931, 2333
Tru9I	TTAA	4 cut(s)	687, 1371, 1931, 2333
TscAI	CASTG	3 cut(s)	900, 914, 1398
TseFI	GTSAC	5 cut(s)	641, 821, 895, 2143, 2321
TseI	GCWGC	4 cut(s)	75, 1583, 1835, 2125
Tsp45I	GTSAC	5 cut(s)	641, 821, 895, 2143, 2321
TspDTI	ATGAA	7 cut(s)	992, 1084, 1311, 1449, 1727, 1739, 1900
TspGWI	ACGGA	1 cut(s)	2038
TspRI	CASTG	3 cut(s)	900, 914, 1398
Tth111I	GACNNNGTC	2 cut(s)	577, 721
VpaK11BI	GGWCC	4 cut(s)	601, 696, 736, 772
XapI	RAATTY	1 cut(s)	2335
XbaI	TCTAGA	1 cut(s)	725
XceI	RCATGY	3 cut(s)	514, 1618, 2320
XmiI	GTMKAC	1 cut(s)	634
XmnI	GAANNNNTTC	2 cut(s)	23, 2292
XspI	CTAG	3 cut(s)	726, 1757, 1866
ZraI	GACGTC	2 cut(s)	623, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.