Rorug06G0324500

Tyrosine kinase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001376
Physical Location & Seq
Forward (+)
47574013 .. 47574678
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0324500.1

Sequence Viewer

Length: 435 bp
ATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGGTTGATCCAGCAAGCCAAGTCGTTGTTCGGGTCGGATCAGCCCGACCAGGAAACAAGACCGCTCGAGTTCATCAACCGGAACTTCTCCATTTTTGACATCGGCATCATTGCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTAGCAAGAAGAAGAACGGTGCTCCGAACCCAAACCCGGACTTCGTAGATTCCGACTGCCAGATGAAAAGAGTGCCGAAGAAACGGGGCCGGAAACCCTGGCTGGGCCGAGACACGCTGCTCAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTCACCTCGCAAGGGCGGCGTTGGAAGCGAGGGAGTGAGCGTGGAGGTGAGGAAGGCGGCGTTGGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MS_channel Pkinase_Tyr

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

9.51

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 97, 346
AciI CCGC 7 cut(s) 95, 341, 346, 352, 355, 379, 420
AclWI GGATC 3 cut(s) 34, 78, 171
AcvI CACGTG 1 cut(s) 334
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 4 cut(s) 241, 308, 337, 375
AflIII ACRYGT 1 cut(s) 193
AjnI CCWGG 2 cut(s) 81, 302
AjuI GAANNNNNNNTTGG 3 cut(s) 44, 76, 408
AluBI AGCT 3 cut(s) 171, 364, 432
AluI AGCT 3 cut(s) 171, 364, 432
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 3 cut(s) 34, 78, 171
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 2 cut(s) 292, 310
ApeKI GCWGC 2 cut(s) 322, 349
AspS9I GGNCC 2 cut(s) 292, 310
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 358, 422
AvaI CYCGRG 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 309, 361
BciT130I CCWGG 2 cut(s) 83, 304
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 2 cut(s) 207, 433
BisI GCNGC 6 cut(s) 323, 347, 350, 353, 380, 421
BlsI GCNGC 6 cut(s) 324, 348, 351, 354, 381, 422
Bme1390I CCNGG 3 cut(s) 83, 242, 304
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 292, 310
BmiI GGNNCC 2 cut(s) 7, 293
BmrFI CCNGG 3 cut(s) 83, 242, 304
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 2 cut(s) 11, 111
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 308, 337, 375
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 83, 304
BseDI CCNNGG 1 cut(s) 302
BseLI CCNNNNNNNGG 4 cut(s) 241, 308, 337, 375
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 309, 361
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 2 cut(s) 294, 312
BsiHKAI GWGCWC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 5 cut(s) 12, 112, 147, 242, 295
BslI CCNNNNNNNGG 4 cut(s) 241, 308, 337, 375
BsmAI GTCTC 1 cut(s) 309
BsnI GGCC 2 cut(s) 294, 312
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 4 cut(s) 18, 39, 70, 163
BspACI CCGC 7 cut(s) 95, 341, 346, 352, 355, 379, 420
BspANI GGCC 2 cut(s) 294, 312
BspLI GGNNCC 2 cut(s) 7, 293
BspPI GGATC 3 cut(s) 34, 78, 171
BsrBI CCGCTC 2 cut(s) 97, 346
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 4 cut(s) 18, 39, 70, 163
Bst2UI CCWGG 2 cut(s) 83, 304
Bst4CI ACNGT 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 48, 148, 152
BstKTI GATC 4 cut(s) 21, 42, 73, 166
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 4 cut(s) 18, 39, 70, 163
BstMWI GCNNNNNNNGC 6 cut(s) 352, 361, 370, 379, 388, 429
BstNI CCWGG 2 cut(s) 83, 304
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 3 cut(s) 81, 240, 302
BstV1I GCAGC 2 cut(s) 309, 361
BsuRI GGCC 2 cut(s) 294, 312
Cac8I GCNNGC 3 cut(s) 48, 148, 152
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 292, 310
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 194
CviJI RGCY 8 cut(s) 50, 76, 171, 294, 307, 312, 364, 432
CviKI_1 RGCY 8 cut(s) 50, 76, 171, 294, 307, 312, 364, 432
CviQI GTAC 1 cut(s) 175
DpnI GATC 4 cut(s) 20, 41, 72, 165
DpnII GATC 4 cut(s) 18, 39, 70, 163
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 356
Eco72I CACGTG 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 81, 302
FaeI CATG 1 cut(s) 197
FaiI YATR 1 cut(s) 195
FatI CATG 1 cut(s) 193
FauI CCCGC 1 cut(s) 348
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 6 cut(s) 323, 347, 350, 353, 380, 421
Fsp4HI GCNGC 6 cut(s) 323, 347, 350, 353, 380, 421
FspBI CTAG 2 cut(s) 207, 433
GluI GCNGC 6 cut(s) 323, 347, 350, 353, 380, 421
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 2 cut(s) 294, 312
HapII CCGG 5 cut(s) 12, 112, 147, 242, 295
Hin1II CATG 1 cut(s) 197
HinfI GANTC 1 cut(s) 254
HpaII CCGG 5 cut(s) 12, 112, 147, 242, 295
HphI GGTGA 2 cut(s) 358, 422
Hpy188I TCNGA 4 cut(s) 23, 70, 231, 259
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 6 cut(s) 352, 361, 370, 379, 388, 429
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 1 cut(s) 197
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 18, 39, 70, 163
LmnI GCTCC 2 cut(s) 232, 343
Lsp1109I GCAGC 2 cut(s) 309, 361
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 207, 433
MaeII ACGT 1 cut(s) 333
MalI GATC 4 cut(s) 20, 41, 72, 165
MbiI CCGCTC 2 cut(s) 97, 346
MboI GATC 4 cut(s) 18, 39, 70, 163
MboII GAAGA 4 cut(s) 170, 226, 229, 295
MhlI GDGCHC 1 cut(s) 229
MmeI TCCRAC 4 cut(s) 48, 282, 365, 406
MnlI CCTC 7 cut(s) 19, 154, 331, 379, 386, 401, 406
MroNI GCCGGC 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 5 cut(s) 12, 112, 147, 242, 295
MspR9I CCNGG 3 cut(s) 83, 242, 304
MvaI CCWGG 2 cut(s) 83, 304
MwoI GCNNNNNNNGC 6 cut(s) 352, 361, 370, 379, 388, 429
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 242
NdeII GATC 4 cut(s) 18, 39, 70, 163
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 7, 293
NmeAIII GCCGAG 1 cut(s) 338
NspI RCATGY 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 98
PciI ACATGT 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 6 cut(s) 324, 348, 351, 354, 381, 422
PmaCI CACGTG 1 cut(s) 334
PmlI CACGTG 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 334
PscI ACATGT 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 81, 302
PspCI CACGTG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 2 cut(s) 81, 302
PspN4I GGNNCC 2 cut(s) 7, 293
PspPI GGNCC 2 cut(s) 292, 310
PspXI VCTCGAGB 1 cut(s) 98
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 6 cut(s) 323, 347, 350, 353, 380, 421
Sau3AI GATC 4 cut(s) 18, 39, 70, 163
Sau96I GGNCC 2 cut(s) 292, 310
ScrFI CCNGG 3 cut(s) 83, 242, 304
SduI GDGCHC 1 cut(s) 229
SetI ASST 6 cut(s) 173, 336, 366, 371, 412, 434
SfaNI GCATC 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 7 cut(s) 95, 341, 346, 352, 355, 379, 420
SspMI CTAG 2 cut(s) 207, 433
StyD4I CCNGG 3 cut(s) 81, 240, 302
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 336
TaqI TCGA 1 cut(s) 99
TauI GCSGC 4 cut(s) 349, 355, 382, 423
TfiI GAWTC 1 cut(s) 254
TseI GCWGC 2 cut(s) 322, 349
TspDTI ATGAA 2 cut(s) 94, 284
XceI RCATGY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 2 cut(s) 207, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.