Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8207138.1

Orthogroup ID

OG0001376

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 653

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8207138.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 593 bp

atggcacagagaccagaacaagtagaagtcaaggtcgacggtaccggagaaagaagcccgagaaacacagttggtggggagtctttccggcgaagaagcaaagatcaggctgcatccaactcgggtggacctcaggttctgaggtgtagctcaagcgcttcgttttctagtaaaggttggaaacccccaatgagcaagaccaggtcgaggcttattgacccacttgaggaacggtgtcccaaatcagataggttggcccattccggacgagtggtcggaaaagatgaagaggacgatggttttgacgttgatgatatacccgaagagtacaagaggatgaagttcaacactttgacgttacttcaatgggagactaaggccgtgggatcttccgatttggaaatgggagctgttggttttggcattgatttgcgggcgtttggtttcgggttgggggattcgggtggttgtgttctttgtggagagaaattttctgatgaggaaaagggtgttgtattttgtttatgggttaagaaaggctgtgcagaattgtctctggttgggtttggttttggttgtgtggcatttgattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.42

Weight (kDa)

5.43

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78610 AT2G17010 AT2G17010
fragaria_vesca	FvH4_2g15780 FvH4_2g37870 FvH4_2g37870 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430
malus_domestica	MD05G1126700.v1.1 MD08G1006800.v1.1 MD08G1006900.v1.1 MD10G1129900.v1.1
prunus_persica	Prupe.1G358700_v2.0.a1 Prupe.8G170400_v2.0.a1
pyrus_communis	pycom05g12260 pycom08g00530 pycom08g00560 pycom08g00580
rosa_chinensis	RchiOBHm_Chr5g0071021 RchiOBHm_Chr6g0279131 RchiOBHm_Chr6g0303751
rosa_laevigata	RLG00000011049 RLG00000013165 RLG00000036184
rosa_multiflora	Rmu_co8207138.1_g000001 Rmu_co8395065.1_g000001 Rmu_sc0001141.1_g000023 Rmu_sc0012878.1_g000006 Rmu_sc0014203.1_g000020
rosa_roxburghii	Rroxscaffold_1G00010020 Rroxscaffold_7G00164430 Rroxscaffold_7G00189100
rosa_rugosa	Rorug05G0409800 Rorug05G0409900 Rorug05G0410000 Rorug06G0122500 Rorug06G0324500
rosa_samantha	Rh5AG466100 Rh5BG484300 Rh5CG508900 Rh5DG495700 Rh6AG231300 Rh6AG438800 Rh6BG236200 Rh6BG464300 Rh6CG238200 Rh6CG451100 Rh6DG229800 Rh6DG438000
rosa_wichuraiana	Rw5G043280 Rw6G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	263
AciI	CCGC	1 cut(s)	433
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	488
AfaI	GTAC	2 cut(s)	43, 329
AfeI	AGCGCT	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	207, 226
AgsI	TTSAA	2 cut(s)	346, 365
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	200
AloI	GAACNNNNNNTCC	2 cut(s)	120, 152
AluBI	AGCT	2 cut(s)	150, 410
AluI	AGCT	2 cut(s)	150, 410
Alw26I	GTCTC	3 cut(s)	4, 365, 558
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	139
Ama87I	CYCGRG	2 cut(s)	58, 121
Aor13HI	TCCGGA	1 cut(s)	263
Aor51HI	AGCGCT	1 cut(s)	157
AoxI	GGCC	2 cut(s)	255, 378
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	128, 256
AvaI	CYCGRG	2 cut(s)	58, 121
AvaII	GGWCC	1 cut(s)	128
AxyI	CCTNAGG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	1 cut(s)	202
BcoDI	GTCTC	3 cut(s)	4, 365, 558
BfaI	CTAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmeT110I	CYCGRG	2 cut(s)	58, 121
BmgT120I	GGNCC	2 cut(s)	128, 256
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	136, 245
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	2 cut(s)	44, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 226
Bse21I	CCTNAGG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	113, 342
BseLI	CCNNNNNNNGG	2 cut(s)	207, 226
BseMII	CTCAG	2 cut(s)	131, 146
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	2 cut(s)	257, 380
BshNI	GGYRCC	1 cut(s)	41
BsiHKCI	CYCGRG	2 cut(s)	58, 121
BsiSI	CCGG	3 cut(s)	45, 88, 264
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	207, 226
BsmAI	GTCTC	3 cut(s)	4, 365, 558
BsmFI	GGGAC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	257, 380
Bso31I	GGTCTC	1 cut(s)	4
BsoBI	CYCGRG	2 cut(s)	58, 121
Bsp13I	TCCGGA	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	103, 386
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	2 cut(s)	257, 380
BspCNI	CTCAG	2 cut(s)	132, 145
BspEI	TCCGGA	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	103, 386
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	41, 70, 234
Bst6I	CTCTTC	2 cut(s)	282, 318
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	3 cut(s)	132, 140, 375
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	113, 342
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	106, 389
BstMAI	GTCTC	3 cut(s)	4, 365, 558
BstMBI	GATC	2 cut(s)	103, 386
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	257, 380
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	113, 342
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	128, 256
CsiI	ACCWGGT	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	42, 328
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviJI	RGCY	8 cut(s)	57, 110, 150, 211, 257, 380, 410, 540
CviKI_1	RGCY	8 cut(s)	57, 110, 150, 211, 257, 380, 410, 540
CviQI	GTAC	2 cut(s)	42, 328
DdeI	CTNAG	3 cut(s)	132, 140, 375
DpnI	GATC	2 cut(s)	105, 388
DpnII	GATC	2 cut(s)	103, 386
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	282, 318
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	2 cut(s)	282, 318
Eco31I	GGTCTC	1 cut(s)	4
Eco47I	GGWCC	1 cut(s)	128
Eco47III	AGCGCT	1 cut(s)	157
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	58, 121
EcoRII	CCWGG	1 cut(s)	200
FaiI	YATR	2 cut(s)	317, 526
FaqI	GGGAC	1 cut(s)	222
FauI	CCCGC	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	2 cut(s)	100, 349
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	257, 380
HapII	CCGG	3 cut(s)	45, 88, 264
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	80, 458
HpaII	CCGG	3 cut(s)	45, 88, 264
Hpy166II	GTNNAC	2 cut(s)	37, 128
Hpy188I	TCNGA	5 cut(s)	141, 247, 278, 394, 496
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	2 cut(s)	37, 128
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	3 cut(s)	41, 70, 234
HpyCH4IV	ACGT	2 cut(s)	306, 356
HpyCH4V	TGCA	2 cut(s)	113, 545
HpyF3I	CTNAG	3 cut(s)	132, 140, 375
HpySE526I	ACGT	2 cut(s)	306, 356
HspAI	GCGC	1 cut(s)	156
Kpn2I	TCCGGA	1 cut(s)	263
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	103, 386
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	9 cut(s)	27, 58, 92, 101, 119, 187, 214, 277, 542
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	122
MabI	ACCWGGT	1 cut(s)	200
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	306, 356
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	2 cut(s)	105, 388
MboI	GATC	2 cut(s)	103, 386
MboII	GAAGA	4 cut(s)	105, 299, 335, 381
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	2 cut(s)	488, 548
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	3 cut(s)	141, 158, 256
MnlI	CCTC	7 cut(s)	135, 141, 201, 220, 283, 327, 493
MroI	TCCGGA	1 cut(s)	263
MseI	TTAA	1 cut(s)	531
MspI	CCGG	3 cut(s)	45, 88, 264
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
NdeII	GATC	2 cut(s)	103, 386
NlaIV	GGNNCC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	458
PflFI	GACNNNGTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	128, 256
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	202
RsaI	GTAC	2 cut(s)	43, 329
RsaNI	GTAC	2 cut(s)	42, 328
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	103, 386
Sau96I	GGNCC	2 cut(s)	128, 256
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	202
SexAI	ACCWGGT	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	122
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	151, 224
SmoI	CTYRAG	2 cut(s)	151, 224
Sse9I	AATT	2 cut(s)	488, 548
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	41, 70, 234
TaiI	ACGT	2 cut(s)	309, 359
TaqI	TCGA	2 cut(s)	36, 206
TasI	AATT	2 cut(s)	488, 548
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	300, 353
Tth111I	GACNNNGTC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.