Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001376

Physical Location & Seq

Genomic Coordinates Forward (+)

16946228 .. 16947243

Gene Structure 1016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0122500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGGCATTCATAAGAAATCATGGATCCCTGAGTCCAAAGCGGTACCATTATTCAGATTTGAAGAAAATGACAAACTCATTCAAAGATCAGATTGGAAAAGGTGGATATGGCACAGTATACAAAGGAAAGCTACCCAATGACCTTGTGGTGGCAGTGAAAGTCCTAAGTGAATCTAAGGGTAATGGAGAAGAATTTATCAATGAAGTTGCTAGCATTGGTGGAACTTCTCATGTCAATATAGTGACTCTTGTGGGATTTTGCTATGAAGGGGAGAAAAGAGCCTCATATACGATTGGCATTGCTCGCGGACTAGAATACTTGCACCGTGGTTGTAACACAAGAATTTTACATTTTGACATAAAGCCACAAAACATTCTTCTGGATAAAGATTTTTGCCCAAAGATATCTGATTTCGGCCTTGCCAAACTATGCATGACGAAGGAAAGTATCGTATCGATGCTAGGGACAAGAGGAACTGCAGGATACATTGCACCAGAAGTGTTTAGTCAGAACTTTGGAGGAGTATCTCATAAGTCTGATGTTTATAGCTATGGGATGCTAGTTCTTGAAATGGTTGGTGCAAGAAAGAATTTGGTTTCAGAAGTGTCTCATACCAATGAAATGTTTCCACATTACATTTATAAAGATCTAGAGCTAGAGAAGAATGAGATTATATTTGGGGAAATAACAGAGGATGAGAGCAAAATAGCAAGAAAGATACTTGGGTGCATTCAGACCCTTCCATCTGATCGACCATCAATGACCAAAGTGGTAGAGATGTTGGAAGGACCTCTTCATTCCCTGCCAATTCCACCAAAGCCTCTCTTATGTTCTGAAGAAGAATCTGCACCCATGTCCCAACCATCTGAAACAGTCAATAAGCCAATTACTTGTATTGGATGTTATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

304

Amino Acids

33.68

Weight (kDa)

6.51

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	28 - 93	1.5e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	29 - 92	1.8e-07	Protein kinase domain
Pkinase	PF00069	93 - 260	2e-26	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	93 - 262	2.7e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78610 AT2G17010 AT2G17010
fragaria_vesca	FvH4_2g15780 FvH4_2g37870 FvH4_2g37870 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430
malus_domestica	MD05G1126700.v1.1 MD08G1006800.v1.1 MD08G1006900.v1.1 MD10G1129900.v1.1
prunus_persica	Prupe.1G358700_v2.0.a1 Prupe.8G170400_v2.0.a1
pyrus_communis	pycom05g12260 pycom08g00530 pycom08g00560 pycom08g00580
rosa_chinensis	RchiOBHm_Chr5g0071021 RchiOBHm_Chr6g0279131 RchiOBHm_Chr6g0303751
rosa_laevigata	RLG00000011049 RLG00000013165 RLG00000036184
rosa_multiflora	Rmu_co8207138.1_g000001 Rmu_co8395065.1_g000001 Rmu_sc0001141.1_g000023 Rmu_sc0012878.1_g000006 Rmu_sc0014203.1_g000020
rosa_roxburghii	Rroxscaffold_1G00010020 Rroxscaffold_7G00164430 Rroxscaffold_7G00189100
rosa_rugosa	Rorug05G0409800 Rorug05G0409900 Rorug05G0410000 Rorug06G0122500 Rorug06G0324500
rosa_samantha	Rh5AG466100 Rh5BG484300 Rh5CG508900 Rh5DG495700 Rh6AG231300 Rh6AG438800 Rh6BG236200 Rh6BG464300 Rh6CG238200 Rh6CG451100 Rh6DG229800 Rh6DG438000
rosa_wichuraiana	Rw5G043280 Rw6G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	309
AciI	CCGC	2 cut(s)	43, 309
AclWI	GGATC	2 cut(s)	21, 34
AcsI	RAATTY	3 cut(s)	194, 345, 592
AcuI	CTGAAG	1 cut(s)	858
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	64, 85, 572
AluBI	AGCT	3 cut(s)	133, 552, 658
AluI	AGCT	3 cut(s)	133, 552, 658
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	2 cut(s)	21, 34
AoxI	GGCC	1 cut(s)	418
ApoI	RAATTY	3 cut(s)	194, 345, 592
Asp700I	GAANNNNTTC	1 cut(s)	627
Asp718I	GGTACC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	791
AsuNHI	GCTAGC	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	791
BaeI	ACNNNNGTAYC	2 cut(s)	713, 746
BamHI	GGATCC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	45
BccI	CCATC	3 cut(s)	754, 766, 874
BciVI	GTATCC	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	6 cut(s)	213, 314, 464, 563, 653, 659
BfmI	CTRYAG	1 cut(s)	480
BfuI	GTATCC	1 cut(s)	479
BglII	AGATCT	1 cut(s)	649
Bme18I	GGWCC	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	791
BmiI	GGNNCC	2 cut(s)	28, 47
BmsI	GCATC	2 cut(s)	450, 549
BmtI	GCTAGC	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse3DI	GCAATG	2 cut(s)	300, 489
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	564, 703, 908
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	2 cut(s)	300, 489
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	537
BsgI	GTGCAG	1 cut(s)	834
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	458
BslFI	GGGAC	2 cut(s)	481, 844
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	481, 844
BsmI	GAATGC	2 cut(s)	8, 732
BsnI	GGCC	1 cut(s)	420
Bsp143I	GATC	4 cut(s)	26, 88, 649, 751
BspACI	CCGC	2 cut(s)	43, 309
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	24
BspDI	ATCGAT	1 cut(s)	458
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	28, 47
BspMAI	CTGCAG	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	216
BspPI	GGATC	2 cut(s)	21, 34
BspT107I	GGYRCC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	300, 489
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	4 cut(s)	26, 88, 649, 751
BssNAI	GTATAC	1 cut(s)	121
Bst1107I	GTATAC	1 cut(s)	121
Bst4CI	ACNGT	3 cut(s)	118, 329, 877
Bst6I	CTCTTC	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	214, 307
BstDEI	CTNAG	3 cut(s)	32, 167, 177
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	3 cut(s)	564, 703, 908
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	29, 91, 652, 754
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	4 cut(s)	26, 88, 649, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstSFI	CTRYAG	1 cut(s)	480
BstUI	CGCG	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	26, 649
BstYI	RGATCY	2 cut(s)	26, 649
BstZ17I	GTATAC	1 cut(s)	121
Bsu15I	ATCGAT	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	564, 703, 908
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	214, 307
Cfr13I	GGNCC	1 cut(s)	791
ClaI	ATCGAT	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	4 cut(s)	23, 233, 436, 856
CviJI	RGCY	8 cut(s)	133, 284, 367, 420, 552, 658, 823, 886
CviKI_1	RGCY	8 cut(s)	133, 284, 367, 420, 552, 658, 823, 886
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	32, 167, 177
DpnI	GATC	4 cut(s)	28, 90, 651, 753
DpnII	GATC	4 cut(s)	26, 88, 649, 751
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Eco32I	GATATC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	791
Eco57I	CTGAAG	1 cut(s)	858
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRV	GATATC	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	437
FaeI	CATG	4 cut(s)	26, 236, 439, 859
FalI	AAGNNNNNCTT	4 cut(s)	780, 812, 812, 844
FaqI	GGGAC	2 cut(s)	481, 844
FatI	CATG	4 cut(s)	22, 232, 435, 855
FblI	GTMKAC	1 cut(s)	120
FokI	GGATG	2 cut(s)	571, 710
FspBI	CTAG	6 cut(s)	213, 314, 464, 563, 653, 659
HaeIII	GGCC	1 cut(s)	420
Hin1II	CATG	4 cut(s)	26, 236, 439, 859
HinfI	GANTC	4 cut(s)	34, 173, 247, 845
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188III	TCNNGA	3 cut(s)	383, 569, 653
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	4 cut(s)	263, 436, 752, 782
HpyCH4III	ACNGT	3 cut(s)	118, 329, 877
HpyCH4V	TGCA	7 cut(s)	325, 435, 482, 494, 584, 732, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	3 cut(s)	32, 167, 177
Hsp92II	CATG	4 cut(s)	26, 236, 439, 859
KpnI	GGTACC	1 cut(s)	49
Kzo9I	GATC	4 cut(s)	26, 88, 649, 751
LpnPI	CCDG	5 cut(s)	44, 368, 468, 510, 818
LweI	GCATC	2 cut(s)	450, 549
MaeI	CTAG	6 cut(s)	213, 314, 464, 563, 653, 659
MaeIII	GTNAC	2 cut(s)	244, 335
MalI	GATC	4 cut(s)	28, 90, 651, 753
MboI	GATC	4 cut(s)	26, 88, 649, 751
MboII	GAAGA	7 cut(s)	76, 203, 371, 676, 788, 851, 854
MflI	RGATCY	2 cut(s)	26, 649
MluCI	AATT	5 cut(s)	194, 345, 592, 810, 888
MlyI	GAGTC	2 cut(s)	43, 241
MmeI	TCCRAC	1 cut(s)	765
MnlI	CCTC	6 cut(s)	295, 467, 515, 688, 804, 834
Mph1103I	ATGCAT	1 cut(s)	437
MroXI	GAANNNNTTC	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	618
Mva1269I	GAATGC	2 cut(s)	8, 732
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	4 cut(s)	26, 88, 649, 751
NheI	GCTAGC	1 cut(s)	212
NlaIII	CATG	4 cut(s)	26, 236, 439, 859
NlaIV	GGNNCC	2 cut(s)	28, 47
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	437
PctI	GAATGC	2 cut(s)	8, 732
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	173, 845
PleI	GAGTC	2 cut(s)	42, 241
PpsI	GAGTC	2 cut(s)	42, 241
PpuMI	RGGWCCY	1 cut(s)	791
PsiI	TTATAA	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	791
PspN4I	GGNNCC	2 cut(s)	28, 47
PspPI	GGNCC	1 cut(s)	791
PspPPI	RGGWCCY	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	26, 649
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	618
Sau3AI	GATC	4 cut(s)	26, 88, 649, 751
Sau96I	GGNCC	1 cut(s)	791
SchI	GAGTC	2 cut(s)	43, 241
SetI	ASST	6 cut(s)	106, 135, 147, 554, 660, 796
SfaNI	GCATC	2 cut(s)	450, 549
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	618
Sse9I	AATT	5 cut(s)	194, 345, 592, 810, 888
SsiI	CCGC	2 cut(s)	43, 309
SspMI	CTAG	6 cut(s)	213, 314, 464, 563, 653, 659
TaaI	ACNGT	3 cut(s)	118, 329, 877
TaqI	TCGA	2 cut(s)	458, 754
TasI	AATT	5 cut(s)	194, 345, 592, 810, 888
TfiI	GAWTC	2 cut(s)	173, 845
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	219, 282, 636, 788
TspRI	CASTG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	791
XapI	RAATTY	3 cut(s)	194, 345, 592
XbaI	TCTAGA	1 cut(s)	652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	6 cut(s)	213, 314, 464, 563, 653, 659
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.