Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001376

Physical Location & Seq

Genomic Coordinates Reverse (-)

56575354 .. 56575897

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0409900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCTACTATTGTTCTTTACATTGTTGTCATCATACATTCCTTACTATTGTTGTCTTGTTTTGATGTGTCTATGGCTGCGAGGAACATCCCATCCAGCGCTCCGAGCACAATGGTGAGGCCTCTGGTCACTGAGGGAGAAGATCGTTATGTGAGCATTATGCCTCAGGACTTGAAACACAAGCAACAAGTCTTTCATGGGAGGGAAGTCAAAGGTTGCATGCCGAAAGGGTTTAGGCATGCATCCGCTCCAAGCCGGTTCGTGAACTCTGCAGGCTGTTCTTCCGATATGCACACCAAGAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

9.45

Isoelectric Point (pI)

65.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78610 AT2G17010 AT2G17010
fragaria_vesca	FvH4_2g15780 FvH4_2g37870 FvH4_2g37870 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430 FvH4_3g39430
malus_domestica	MD05G1126700.v1.1 MD08G1006800.v1.1 MD08G1006900.v1.1 MD10G1129900.v1.1
prunus_persica	Prupe.1G358700_v2.0.a1 Prupe.8G170400_v2.0.a1
pyrus_communis	pycom05g12260 pycom08g00530 pycom08g00560 pycom08g00580
rosa_chinensis	RchiOBHm_Chr5g0071021 RchiOBHm_Chr6g0279131 RchiOBHm_Chr6g0303751
rosa_laevigata	RLG00000011049 RLG00000013165 RLG00000036184
rosa_multiflora	Rmu_co8207138.1_g000001 Rmu_co8395065.1_g000001 Rmu_sc0001141.1_g000023 Rmu_sc0012878.1_g000006 Rmu_sc0014203.1_g000020
rosa_roxburghii	Rroxscaffold_1G00010020 Rroxscaffold_7G00164430 Rroxscaffold_7G00189100
rosa_rugosa	Rorug05G0409800 Rorug05G0409900 Rorug05G0410000 Rorug06G0122500 Rorug06G0324500
rosa_samantha	Rh5AG466100 Rh5BG484300 Rh5CG508900 Rh5DG495700 Rh6AG231300 Rh6AG438800 Rh6BG236200 Rh6BG464300 Rh6CG238200 Rh6CG451100 Rh6DG229800 Rh6DG438000
rosa_wichuraiana	Rw5G043280 Rw6G037990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	246
AfeI	AGCGCT	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
Alw21I	GWGCWC	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	100
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	255
Bse21I	CCTNAGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	87, 92, 242
BseMII	CTCAG	2 cut(s)	123, 179
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	256
BsnI	GGCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	124, 178
BspMAI	CTGCAG	1 cut(s)	274
BsrBI	CCGCTC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	255
BssMI	GATC	1 cut(s)	142
BstC8I	GCNNGC	3 cut(s)	221, 240, 274
BstDEI	CTNAG	2 cut(s)	132, 165
BstF5I	GGATG	3 cut(s)	87, 92, 242
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	2 cut(s)	223, 242
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	87, 92, 242
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	3 cut(s)	221, 240, 274
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	255
CviAII	CATG	3 cut(s)	197, 220, 239
CviJI	RGCY	4 cut(s)	77, 121, 255, 276
CviKI_1	RGCY	4 cut(s)	77, 121, 255, 276
DdeI	CTNAG	2 cut(s)	132, 165
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco147I	AGGCCT	1 cut(s)	121
Eco47III	AGCGCT	1 cut(s)	100
Eco81I	CCTNAGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	244
FaeI	CATG	3 cut(s)	200, 223, 242
FaiI	YATR	8 cut(s)	35, 74, 150, 161, 198, 221, 240, 290
FatI	CATG	3 cut(s)	196, 219, 238
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	3 cut(s)	74, 79, 229
Fsp4HI	GCNGC	1 cut(s)	78
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	121
HapII	CCGG	1 cut(s)	256
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	200, 223, 242
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	6, 265
Hpy188I	TCNGA	2 cut(s)	105, 286
Hpy188III	TCNNGA	2 cut(s)	167, 262
Hpy8I	GTNNAC	2 cut(s)	6, 265
HpyCH4V	TGCA	4 cut(s)	219, 242, 272, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	132, 165
Hsp92II	CATG	3 cut(s)	200, 223, 242
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	2 cut(s)	106, 253
LpnPI	CCDG	5 cut(s)	109, 110, 152, 258, 269
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	152, 273
MhlI	GDGCHC	1 cut(s)	110
MnlI	CCTC	6 cut(s)	75, 111, 127, 132, 174, 195
Mph1103I	ATGCAT	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	200, 223, 242
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	244
NspI	RCATGY	2 cut(s)	223, 242
OliI	CACNNNNGTG	1 cut(s)	113
PaeI	GCATGC	2 cut(s)	223, 242
PceI	AGGCCT	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	113
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	2 cut(s)	217, 307
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	113
SphI	GCATGC	2 cut(s)	223, 242
SseBI	AGGCCT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	121
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	136
XceI	RCATGY	2 cut(s)	223, 242
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.