Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

3184774 .. 3185446

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAGAATCCAGATCTGAACTCGGGGCAGTACTTGTTCCAGGAAATGGATCGATCGTATCTGGATCTGGACTACGGGCATGTGGATCCGAAACTTGAAGAAGCTCAGGAGCAGAACAGCTGCGGCGCGGACGGCGTCGTTCCGGTGCGGAGCAAGAACATGCAGCCTCTGCTAGTTAACGACCAGAGCTTCGAACTCGACTTCTCCGCCGGCTCCAAGCCCTTCGTCTACGGCTACCACCACGCTCAGTGTCTGAGCCAGAGTGTATCATCGTCGTCGATGGACATCAGCGTCGTGCCGGATAGCAACGCGGTGACCGACGCGTCGGATGCATACACCAAGTCACTGACCACCGCTGTGGAGACATCGCAACTGGCGGTCCAGCTCTCGTCCGCGGATCGCGTGGCGAGGGTGCTGAGGTACAGAGAGAAGCGGAAGAACCGAAAGTTCGAGAAGACGATACGGTACGCTTCGAGAAAAGCGTACGCGGAAACTCGGCCGCGAATCAAAGGCAGGTTCGCGAAGCGCACGGAGGTGGAGATCGAAGCCGAGCGGATGTGCCGCTACGGCGTCGTTCCGTCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

196

Amino Acids

22.05

Weight (kDa)

6.84

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	134 - 176	9.8e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	290, 322
Acc36I	ACCTGC	1 cut(s)	504
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	8 cut(s)	128, 311, 323, 395, 402, 488, 502, 521
AclWI	GGATC	5 cut(s)	57, 72, 80, 93, 405
AcoI	YGGCCR	1 cut(s)	497
AcyI	GRCGYC	2 cut(s)	135, 570
AfaI	GTAC	4 cut(s)	32, 422, 467, 485
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	39
AleI	CACNNNNGTG	2 cut(s)	356, 533
AluBI	AGCT	4 cut(s)	104, 120, 189, 385
AluI	AGCT	4 cut(s)	104, 120, 189, 385
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	5 cut(s)	57, 72, 80, 93, 405
AlwNI	CAGNNNCTG	2 cut(s)	169, 253
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	120, 163
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	2 cut(s)	128, 528
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	461
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	107, 175
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	3 cut(s)	148, 247, 583
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	504
BglI	GCCNNNNNGGC	1 cut(s)	567
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	5 cut(s)	121, 124, 164, 500, 562
BlsI	GCNGC	5 cut(s)	122, 125, 165, 501, 563
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	87, 214
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	461
Bpu10I	CCTNAGC	2 cut(s)	105, 416
Bpu14I	TTCGAA	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	2 cut(s)	135, 570
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	2 cut(s)	334, 561
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	4 cut(s)	119, 245, 260, 407
BseNI	ACTGG	1 cut(s)	378
BseX3I	CGGCCG	1 cut(s)	497
BseXI	GCAGC	2 cut(s)	107, 175
Bsh1236I	CGCG	8 cut(s)	128, 311, 323, 395, 402, 488, 502, 521
Bsh1285I	CGRYCG	2 cut(s)	56, 500
BshFI	GGCC	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	52
BsiEI	CGRYCG	2 cut(s)	56, 500
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	143, 210, 299
BsiWI	CGTACG	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	499
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	192
Bsp143I	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
Bsp68I	TCGCGA	1 cut(s)	521
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	4 cut(s)	118, 246, 259, 408
BspDI	ATCGAT	1 cut(s)	52
BspFNI	CGCG	8 cut(s)	128, 311, 323, 395, 402, 488, 502, 521
BspLI	GGNNCC	2 cut(s)	87, 214
BspMI	ACCTGC	1 cut(s)	504
BspPI	GGATC	5 cut(s)	57, 72, 80, 93, 405
BspT104I	TTCGAA	1 cut(s)	192
BsrBI	CCGCTC	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
BssNI	GRCGYC	2 cut(s)	135, 570
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	465
BstACI	GRCGYC	2 cut(s)	135, 570
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	4 cut(s)	105, 246, 254, 416
BstDSI	CCRYGG	1 cut(s)	393
BstEII	GGTNACC	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	334, 561
BstFNI	CGCG	8 cut(s)	128, 311, 323, 395, 402, 488, 502, 521
BstHHI	GCGC	2 cut(s)	128, 528
BstKTI	GATC	7 cut(s)	16, 52, 56, 67, 88, 400, 543
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
BstMCI	CGRYCG	2 cut(s)	56, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 169, 329, 567
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	83, 163
BstPI	GGTNACC	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	8 cut(s)	128, 311, 323, 395, 402, 488, 502, 521
BstV1I	GCAGC	2 cut(s)	107, 175
BstV2I	GAAGAC	1 cut(s)	461
BstX2I	RGATCY	3 cut(s)	13, 64, 85
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	3 cut(s)	13, 64, 85
BstZI	CGGCCG	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	499
BsuTUI	ATCGAT	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	334, 561
BtsIMutI	CAGTG	2 cut(s)	254, 344
BtuMI	TCGCGA	1 cut(s)	521
BveI	ACCTGC	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	211
CaiI	CAGNNNCTG	2 cut(s)	169, 253
CfoI	GCGC	2 cut(s)	128, 528
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	379
Cfr42I	CCGCGG	1 cut(s)	396
ClaI	ATCGAT	1 cut(s)	52
CseI	GACGC	5 cut(s)	124, 280, 312, 329, 559
Csp6I	GTAC	4 cut(s)	31, 421, 466, 484
CviAII	CATG	2 cut(s)	80, 160
CviQI	GTAC	4 cut(s)	31, 421, 466, 484
DdeI	CTNAG	4 cut(s)	105, 246, 254, 416
DpnI	GATC	7 cut(s)	15, 51, 55, 66, 87, 399, 542
DpnII	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
DrdI	GACNNNNNNGTC	2 cut(s)	290, 322
DseDI	GACNNNNNNGTC	2 cut(s)	290, 322
EaeI	YGGCCR	1 cut(s)	497
EagI	CGGCCG	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	379
Eco52I	CGGCCG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	22
Eco91I	GGTNACC	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	334
FaeI	CATG	2 cut(s)	83, 163
FaiI	YATR	3 cut(s)	81, 161, 334
FatI	CATG	2 cut(s)	79, 159
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	5 cut(s)	121, 124, 164, 500, 562
FokI	GGATG	2 cut(s)	341, 568
Fsp4HI	GCNGC	5 cut(s)	121, 124, 164, 500, 562
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	2 cut(s)	127, 527
GluI	GCNGC	5 cut(s)	121, 124, 164, 500, 562
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	3 cut(s)	143, 210, 299
HgaI	GACGC	5 cut(s)	124, 280, 312, 329, 559
HhaI	GCGC	2 cut(s)	128, 528
Hin1I	GRCGYC	2 cut(s)	135, 570
Hin1II	CATG	2 cut(s)	83, 163
Hin6I	GCGC	2 cut(s)	126, 526
HinP1I	GCGC	2 cut(s)	126, 526
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	7, 504
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	143, 210, 299
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	2 cut(s)	178, 229
Hpy188I	TCNGA	4 cut(s)	18, 90, 255, 328
Hpy188III	TCNNGA	7 cut(s)	11, 62, 68, 107, 451, 474, 520
Hpy8I	GTNNAC	2 cut(s)	178, 229
Hpy99I	CGWCG	8 cut(s)	140, 277, 280, 296, 323, 328, 575, 583
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4V	TGCA	2 cut(s)	163, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 169, 329, 567
HpyF3I	CTNAG	4 cut(s)	105, 246, 254, 416
Hsp92I	GRCGYC	2 cut(s)	135, 570
Hsp92II	CATG	2 cut(s)	83, 163
HspAI	GCGC	2 cut(s)	126, 526
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	178
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
LmnI	GCTCC	3 cut(s)	109, 150, 218
Lsp1109I	GCAGC	2 cut(s)	107, 175
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	313, 342
MalI	GATC	7 cut(s)	15, 51, 55, 66, 87, 399, 542
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
MboII	GAAGA	3 cut(s)	110, 448, 466
MflI	RGATCY	3 cut(s)	13, 64, 85
MluI	ACGCGT	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	4 cut(s)	177, 402, 411, 526
Mph1103I	ATGCAT	1 cut(s)	334
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	356, 533
MspA1I	CMGCKG	3 cut(s)	120, 356, 395
MspI	CCGG	3 cut(s)	143, 210, 299
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	8 cut(s)	128, 311, 323, 395, 402, 488, 502, 521
MwoI	GCNNNNNNNGC	4 cut(s)	132, 169, 329, 567
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	83, 163
NlaIV	GGNNCC	2 cut(s)	87, 214
NmeAIII	GCCGAG	2 cut(s)	475, 574
NmuCI	GTSAC	2 cut(s)	313, 342
NruI	TCGCGA	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	334
NspI	RCATGY	2 cut(s)	83, 163
NspV	TTCGAA	1 cut(s)	192
OliI	CACNNNNGTG	2 cut(s)	356, 533
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 479
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	7, 504
Pfl23II	CGTACG	1 cut(s)	483
PflFI	GACNNNGTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	122, 125, 165, 501, 563
Ple19I	CGATCG	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	39
PspLI	CGTACG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	87, 214
PspPI	GGNCC	1 cut(s)	379
PstNI	CAGNNNCTG	2 cut(s)	169, 253
PsuI	RGATCY	3 cut(s)	13, 64, 85
PsyI	GACNNNGTC	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	120
RruI	TCGCGA	1 cut(s)	521
RsaI	GTAC	4 cut(s)	32, 422, 467, 485
RsaNI	GTAC	4 cut(s)	31, 421, 466, 484
RseI	CAYNNNNRTG	2 cut(s)	356, 533
SacII	CCGCGG	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	5 cut(s)	121, 124, 164, 500, 562
Sau3AI	GATC	7 cut(s)	13, 49, 53, 64, 85, 397, 540
Sau96I	GGNCC	1 cut(s)	379
ScaI	AGTACT	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	7 cut(s)	106, 122, 191, 387, 422, 518, 537
SfaNI	GCATC	1 cut(s)	319
Sfr303I	CCGCGG	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	356, 533
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	465
TaqI	TCGA	7 cut(s)	52, 192, 198, 278, 450, 473, 543
TaqII	GACCGA	1 cut(s)	332
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	3 cut(s)	126, 502, 564
TfiI	GAWTC	2 cut(s)	7, 504
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	2 cut(s)	254, 351
TseFI	GTSAC	2 cut(s)	313, 342
TseI	GCWGC	2 cut(s)	120, 163
Tsp45I	GTSAC	2 cut(s)	313, 342
TspGWI	ACGGA	2 cut(s)	545, 567
TspRI	CASTG	2 cut(s)	254, 351
Tth111I	GACNNNGTC	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	379
XceI	RCATGY	2 cut(s)	83, 163
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.