Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Reverse (-)

1629140 .. 1632804

Gene Structure 3665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02160.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTTCATGGTTAGATGCTCACACCTCCTCAACTCACTACTTAGACCCAAAATGGCAAATTCGAACTCTGGGGAGGAATTCTTGAAGGATTTCAGAATTCCCAAGTATGTACTAGTGCCTGAATCAAAGAGTGAAAATGTTGCTGATGTACCGCAATGTCCGGTTTTAGTGTTTATCAACTCCAAAAGTGGTGGCCAGCTTGGTGGGGATCTTCTTGTATCATACCGATCCCTTCTAAATGAAAGTCAGGTTTATGATCTGGGGCAAGAGGCTCCGGATAAGGTTCTTTGCCGAATCTATGCCAATCTTGAAAAGCTCAAGCGCAATGGGGATAAATTCGCTACAAATATTCAAGAGAGATTGAGAATCATTGTTGCAGGTGGCGATGGAACAGCTGGTTGGCTTCTTGGAGTTGTTTCTGATCTCAAGTTATCTCATTCGCCACCAATAGCAACAGTACCACTAGGAACAGGAAACAATCTTCCTTTTGCATTTGGATGGGGGAAGAAGAATCCTGGGACAGATCCTCAATCTGTGAAGCAGTTTTTGGACCAAGTAAAGAGAGCCAAGGAAATGAAAATAGACAGCTGGCACATTCTCATGAGGATGAGGAAGTCAAAAGAAGGTCCGTGCGATCCCATTGCGCCCCTTGACCTACCACATTCTTTGCATGCATTTGGCCGTGTCTCTGATTCAAATGAGCTGAGCATGGAAGGCTGCCATACCTTTCGTGGGGGATTTTGGAACTACTTCAGTATGGGAATGGATGCTCAAGTATCATATGCATTTCATACTGAGCGAAAGCAGCATCCCGAAAAGTTCAAAAATCAGTTAACTAATCAGACTACTTATGCAAAGATTACCCATTCACAAGGCTGGTTTTCTTCTCCTCGTTCTCAATCTGCTGCACGGGACATAGCACAATTTGCAAAGGTGAAGATCGATGAAAAACGATGGCCAATGGGAAGATCTACAAATTCCTCCAAGTATCAAGTCAATCGTGATCCTCAATTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

340

Amino Acids

38.1

Weight (kDa)

9.44

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	5 cut(s)	216, 222, 518, 629, 998
AcoI	YGGCCR	3 cut(s)	193, 679, 956
AcsI	RAATTY	5 cut(s)	58, 77, 96, 335, 976
AcuI	CTGAAG	1 cut(s)	736
AfaI	GTAC	3 cut(s)	111, 150, 459
AfiI	CCNNNNNNNGG	1 cut(s)	732
AgsI	TTSAA	5 cut(s)	85, 311, 353, 696, 823
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	4 cut(s)	382, 414, 530, 562
AluBI	AGCT	5 cut(s)	199, 316, 395, 588, 703
AluI	AGCT	5 cut(s)	199, 316, 395, 588, 703
Alw26I	GTCTC	1 cut(s)	691
AlwI	GGATC	5 cut(s)	216, 222, 518, 629, 998
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	3 cut(s)	193, 679, 956
ApeKI	GCWGC	3 cut(s)	717, 805, 905
ApoI	RAATTY	5 cut(s)	58, 77, 96, 335, 976
Asp700I	GAANNNNTTC	2 cut(s)	89, 749
AspLEI	GCGC	2 cut(s)	324, 646
AspS9I	GGNCC	2 cut(s)	550, 626
AsuHPI	GGTGA	1 cut(s)	946
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	550, 626
BalI	TGGCCA	2 cut(s)	195, 958
BbvI	GCAGC	3 cut(s)	704, 817, 892
BccI	CCATC	3 cut(s)	380, 492, 948
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	691
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	3 cut(s)	113, 464, 1018
BfuAI	ACCTGC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	968
BisI	GCNGC	3 cut(s)	718, 806, 906
BlpI	GCTNAGC	1 cut(s)	704
BlsI	GCNGC	3 cut(s)	719, 807, 907
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	2 cut(s)	550, 626
BmgT120I	GGNCC	2 cut(s)	550, 626
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	5, 757, 817
Bpu1102I	GCTNAGC	1 cut(s)	704
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	3 cut(s)	302, 410, 756
Bsa29I	ATCGAT	1 cut(s)	942
BsaJI	CCNNGG	2 cut(s)	515, 567
BsaWI	WCCGGW	2 cut(s)	160, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	732
Bse3DI	GCAATG	3 cut(s)	161, 331, 639
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	516
BseCI	ATCGAT	1 cut(s)	942
BseDI	CCNNGG	2 cut(s)	515, 567
BseGI	GGATG	4 cut(s)	503, 612, 772, 808
BseLI	CCNNNNNNNGG	1 cut(s)	732
BseMI	GCAATG	3 cut(s)	161, 331, 639
BseMII	CTCAG	2 cut(s)	695, 786
BseRI	GAGGAG	2 cut(s)	17, 879
BseXI	GCAGC	3 cut(s)	704, 817, 892
BsgI	GTGCAG	1 cut(s)	891
BshFI	GGCC	3 cut(s)	195, 681, 958
BshVI	ATCGAT	1 cut(s)	942
BsiSI	CCGG	2 cut(s)	161, 275
BslFI	GGGAC	2 cut(s)	532, 926
BslI	CCNNNNNNNGG	1 cut(s)	732
BsmAI	GTCTC	1 cut(s)	691
BsmFI	GGGAC	2 cut(s)	532, 926
BsnI	GGCC	3 cut(s)	195, 681, 958
Bsp119I	TTCGAA	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
Bsp1720I	GCTNAGC	1 cut(s)	704
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	195, 681, 958
BspCNI	CTCAG	2 cut(s)	696, 787
BspDI	ATCGAT	1 cut(s)	942
BspEI	TCCGGA	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	5 cut(s)	216, 222, 518, 629, 998
BspT104I	TTCGAA	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	161, 331, 639
BssECI	CCNNGG	2 cut(s)	515, 567
BssMI	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	197, 590, 672
BstDEI	CTNAG	3 cut(s)	41, 704, 795
BstF5I	GGATG	4 cut(s)	503, 612, 772, 808
BstHHI	GCGC	2 cut(s)	324, 646
BstKTI	GATC	9 cut(s)	211, 230, 259, 424, 526, 637, 942, 971, 1006
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	714, 805, 926
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	514
BstV1I	GCAGC	3 cut(s)	704, 817, 892
BstX2I	RGATCY	3 cut(s)	208, 523, 968
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	3 cut(s)	208, 523, 968
Bsu15I	ATCGAT	1 cut(s)	942
BsuRI	GGCC	3 cut(s)	195, 681, 958
BsuTUI	ATCGAT	1 cut(s)	942
BtgZI	GCGATG	1 cut(s)	399
BtsCI	GGATG	4 cut(s)	503, 612, 772, 808
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	3 cut(s)	197, 590, 672
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	2 cut(s)	324, 646
Cfr13I	GGNCC	2 cut(s)	550, 626
ClaI	ATCGAT	1 cut(s)	942
Csp6I	GTAC	3 cut(s)	110, 149, 458
CspCI	CAANNNNNGTGG	4 cut(s)	172, 207, 648, 683
CviAII	CATG	4 cut(s)	7, 601, 671, 709
CviQI	GTAC	3 cut(s)	110, 149, 458
DdeI	CTNAG	3 cut(s)	41, 704, 795
DpnI	GATC	9 cut(s)	210, 229, 258, 423, 525, 636, 941, 970, 1005
DpnII	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
EaeI	YGGCCR	3 cut(s)	193, 679, 956
Eco130I	CCWWGG	1 cut(s)	567
Eco47I	GGWCC	2 cut(s)	550, 626
Eco57I	CTGAAG	1 cut(s)	736
EcoRI	GAATTC	2 cut(s)	77, 96
EcoRII	CCWGG	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	567
EcoT22I	ATGCAT	2 cut(s)	676, 787
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	4 cut(s)	10, 604, 674, 712
FaqI	GGGAC	2 cut(s)	532, 926
FatI	CATG	4 cut(s)	6, 600, 670, 708
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	718, 806, 906
FokI	GGATG	4 cut(s)	510, 619, 779, 795
Fsp4HI	GCNGC	3 cut(s)	718, 806, 906
FspBI	CTAG	3 cut(s)	113, 464, 1018
GlaI	GCGC	2 cut(s)	323, 645
GluI	GCNGC	3 cut(s)	718, 806, 906
HaeIII	GGCC	3 cut(s)	195, 681, 958
HapII	CCGG	2 cut(s)	161, 275
HhaI	GCGC	2 cut(s)	324, 646
Hin1II	CATG	4 cut(s)	10, 604, 674, 712
Hin6I	GCGC	2 cut(s)	322, 644
HinP1I	GCGC	2 cut(s)	322, 644
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	5 cut(s)	122, 294, 366, 511, 692
HpaI	GTTAAC	1 cut(s)	834
HpaII	CCGG	2 cut(s)	161, 275
HphI	GGTGA	1 cut(s)	946
Hpy166II	GTNNAC	1 cut(s)	834
Hpy188I	TCNGA	4 cut(s)	95, 421, 691, 843
Hpy188III	TCNNGA	7 cut(s)	82, 275, 308, 353, 601, 812, 1001
Hpy8I	GTNNAC	1 cut(s)	834
HpyAV	CCTTC	4 cut(s)	79, 242, 617, 707
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4V	TGCA	8 cut(s)	377, 491, 670, 674, 785, 854, 908, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	714, 805, 926
HpyF3I	CTNAG	3 cut(s)	41, 704, 795
Hsp92II	CATG	4 cut(s)	10, 604, 674, 712
HspAI	GCGC	2 cut(s)	322, 644
Kpn2I	TCCGGA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	834
Kzo9I	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	3 cut(s)	704, 817, 892
LweI	GCATC	3 cut(s)	5, 757, 817
MaeI	CTAG	3 cut(s)	113, 464, 1018
MalI	GATC	9 cut(s)	210, 229, 258, 423, 525, 636, 941, 970, 1005
MboI	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
MboII	GAAGA	7 cut(s)	203, 473, 517, 520, 876, 949, 978
MflI	RGATCY	3 cut(s)	208, 523, 968
MlsI	TGGCCA	2 cut(s)	195, 958
MluCI	AATT	7 cut(s)	58, 77, 96, 335, 923, 976, 1010
MluNI	TGGCCA	2 cut(s)	195, 958
Mox20I	TGGCCA	2 cut(s)	195, 958
Mph1103I	ATGCAT	2 cut(s)	676, 787
MroI	TCCGGA	1 cut(s)	274
MroXI	GAANNNNTTC	2 cut(s)	89, 749
MscI	TGGCCA	2 cut(s)	195, 958
MseI	TTAA	1 cut(s)	833
MslI	CAYNNNNRTG	3 cut(s)	496, 599, 605
Msp20I	TGGCCA	2 cut(s)	195, 958
MspA1I	CMGCKG	2 cut(s)	395, 588
MspI	CCGG	2 cut(s)	161, 275
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	714, 805, 926
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
NlaIII	CATG	4 cut(s)	10, 604, 674, 712
NlaIV	GGNNCC	1 cut(s)	273
NsiI	ATGCAT	2 cut(s)	676, 787
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	674
PagI	TCATGA	1 cut(s)	600
PaqCI	CACCTGC	1 cut(s)	368
PdmI	GAANNNNTTC	2 cut(s)	89, 749
PfeI	GAWTC	5 cut(s)	122, 294, 366, 511, 692
PkrI	GCNGC	3 cut(s)	719, 807, 907
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	550, 626
PsuI	RGATCY	3 cut(s)	208, 523, 968
PvuII	CAGCTG	2 cut(s)	395, 588
RsaI	GTAC	3 cut(s)	111, 150, 459
RsaNI	GTAC	3 cut(s)	110, 149, 458
RseI	CAYNNNNRTG	3 cut(s)	496, 599, 605
SaqAI	TTAA	1 cut(s)	833
SatI	GCNGC	3 cut(s)	718, 806, 906
Sau3AI	GATC	9 cut(s)	208, 227, 256, 421, 523, 634, 939, 968, 1003
Sau96I	GGNCC	2 cut(s)	550, 626
ScrFI	CCNGG	1 cut(s)	516
SfaNI	GCATC	3 cut(s)	5, 757, 817
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	2 cut(s)	550, 626
SmiMI	CAYNNNNRTG	3 cut(s)	496, 599, 605
SmlI	CTYRAG	3 cut(s)	317, 425, 771
SmoI	CTYRAG	3 cut(s)	317, 425, 771
SpeI	ACTAGT	1 cut(s)	112
SphI	GCATGC	1 cut(s)	674
Sse9I	AATT	7 cut(s)	58, 77, 96, 335, 923, 976, 1010
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	113, 464, 1018
StyD4I	CCNGG	1 cut(s)	514
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	2 cut(s)	62, 942
TasI	AATT	7 cut(s)	58, 77, 96, 335, 923, 976, 1010
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	5 cut(s)	122, 294, 366, 511, 692
Tru1I	TTAA	1 cut(s)	833
Tru9I	TTAA	1 cut(s)	833
TseI	GCWGC	3 cut(s)	717, 805, 905
TspDTI	ATGAA	4 cut(s)	255, 590, 779, 960
TspGWI	ACGGA	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	550, 626
XapI	RAATTY	5 cut(s)	58, 77, 96, 335, 976
XceI	RCATGY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	728
XmnI	GAANNNNTTC	2 cut(s)	89, 749
XspI	CTAG	3 cut(s)	113, 464, 1018
Zsp2I	ATGCAT	2 cut(s)	676, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.