Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Reverse (-)

31396333 .. 31400096

Gene Structure 3764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG191300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCCAACTCCAGCTGTGGGTCTGATTTCTTGAAGAGTTTCAAGATTCCCAAGTATGTACTTGAATCTGAATCAAAGCGTGATGGGGAAGATTCTGATGTGCCCGAGTGTCCATTTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCAGCTTGGTGGCAATCTTCTTGTGACGTACCGTCAGCTCCTCAATGACTGGCAGGTTTTTGATGTGGGGGAAGAGGCTCCGGATAAGGTGCTGCGCCGAATTTATGTCAATTTAGAAACGCTCAAGCACAAGGTGTGTGTCAAACTGAGGATAATTGTTGCAGGTGGTGATGGAACTGCTGGCTGGCTTCTTGGAGTTGTTTCTGATATGAAATTAGCTCATCTGCCACCGATAGCAACCGGGAAGAAGAATCCTGGAACAGATCAACATGCTGTGGAGTCCTTTTTGCGTCAAGTAAAGGGAGCCAAGGAAATGAAGATAGTCAGCTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGGAGGTCCATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGCTGAACATGGAGGGCTTCCACACATTTCGTGGGGGATTTTGGAATTACTTCAGTATGGGAATGGATGCTGAAGTATCATATGTCTATATTTTCGTATTCTTTACTCTCTTGCAAGTTCATAATAGGAAGTTGCGATACAAAGCTCCTAGAACTGCTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

250

Amino Acids

28.0

Weight (kDa)

9.02

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	39 - 128	5.5e-10	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	2 cut(s)	190, 299
AccB1I	GGYRCC	1 cut(s)	477
AccIII	TCCGGA	1 cut(s)	226
AclWI	GGATC	2 cut(s)	515, 528
AcoI	YGGCCR	2 cut(s)	3, 565
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	622, 678
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	60, 176
AfiI	CCNNNNNNNGG	2 cut(s)	18, 509
AgsI	TTSAA	3 cut(s)	34, 43, 65
AhdI	GACNNNNNGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	8 cut(s)	15, 151, 184, 365, 474, 541, 589, 731
AluI	AGCT	8 cut(s)	15, 151, 184, 365, 474, 541, 589, 731
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	2 cut(s)	515, 528
Ama87I	CYCGRG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	3, 565
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	2 cut(s)	38, 635
AspLEI	GCGC	2 cut(s)	243, 532
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	77, 311
BceAI	ACGGC	1 cut(s)	552
BciT130I	CCWGG	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	1 cut(s)	735
BfuAI	ACCTGC	2 cut(s)	190, 299
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	388, 402
Bme18I	GGWCC	1 cut(s)	512
BmeRI	GACNNNNNGTC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	4 cut(s)	225, 451, 479, 522
BmrFI	CCNGG	2 cut(s)	388, 402
BmsI	GCATC	1 cut(s)	643
BpuEI	CTTGAG	2 cut(s)	254, 557
BpuMI	CCSGG	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	453
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 509
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	525
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	2 cut(s)	498, 658
BseLI	CCNNNNNNNGG	2 cut(s)	18, 509
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	2 cut(s)	5, 567
BshNI	GGYRCC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	227, 387
BslI	CCNNNNNNNGG	2 cut(s)	18, 509
BsmAI	GTCTC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	5, 567
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	409, 520
BspANI	GGCC	2 cut(s)	5, 567
BspCNI	CTCAG	1 cut(s)	285
BspEI	TCCGGA	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	4 cut(s)	225, 451, 479, 522
BspMI	ACCTGC	2 cut(s)	190, 299
BspPI	GGATC	2 cut(s)	515, 528
BspT107I	GGYRCC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	2 cut(s)	409, 520
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	29, 213
BstC8I	GCNNGC	4 cut(s)	328, 332, 476, 558
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	498, 658
BstHHI	GCGC	2 cut(s)	243, 532
BstKTI	GATC	2 cut(s)	412, 523
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	2 cut(s)	409, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	2 cut(s)	419, 560
BstSCI	CCNGG	2 cut(s)	386, 400
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	5, 567
BtsCI	GGATG	2 cut(s)	498, 658
BveI	ACCTGC	2 cut(s)	190, 299
Cac8I	GCNNGC	4 cut(s)	328, 332, 476, 558
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	2 cut(s)	243, 532
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	59, 175
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	4 cut(s)	416, 487, 557, 595
CviQI	GTAC	2 cut(s)	59, 175
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	2 cut(s)	411, 522
DpnII	GATC	2 cut(s)	409, 520
DraIII	CACNNNGTG	1 cut(s)	280
DriI	GACNNNNNGTC	1 cut(s)	177
EaeI	YGGCCR	2 cut(s)	3, 565
Eam1104I	CTCTTC	2 cut(s)	29, 213
Eam1105I	GACNNNNNGTC	1 cut(s)	177
EarI	CTCTTC	2 cut(s)	29, 213
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	622, 678
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	419, 490, 560, 598
FatI	CATG	4 cut(s)	415, 486, 556, 594
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	2 cut(s)	505, 665
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	2 cut(s)	242, 531
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	5, 567
HapII	CCGG	2 cut(s)	227, 387
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	2 cut(s)	243, 532
Hin1II	CATG	4 cut(s)	419, 490, 560, 598
Hin6I	GCGC	2 cut(s)	241, 530
HinP1I	GCGC	2 cut(s)	241, 530
HinfI	GANTC	7 cut(s)	46, 65, 71, 92, 397, 425, 499
HpaII	CCGG	2 cut(s)	227, 387
HphI	GGTGA	1 cut(s)	326
Hpy188I	TCNGA	5 cut(s)	25, 70, 97, 352, 577
Hpy188III	TCNNGA	5 cut(s)	31, 43, 227, 487, 536
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	308, 556, 700
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	419, 490, 560, 598
HspAI	GCGC	2 cut(s)	241, 530
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	409, 520
LmnI	GCTCC	4 cut(s)	189, 229, 449, 736
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	411, 522
MboI	GATC	2 cut(s)	409, 520
MboII	GAAGA	8 cut(s)	46, 101, 155, 230, 403, 406, 475, 508
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	246, 256, 300, 359, 631
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	7 cut(s)	197, 214, 288, 483, 503, 543, 592
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	2 cut(s)	38, 635
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	15, 474
MspI	CCGG	2 cut(s)	227, 387
MspR9I	CCNGG	2 cut(s)	388, 402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	538
NciI	CCSGG	1 cut(s)	388
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	2 cut(s)	409, 520
NlaIII	CATG	4 cut(s)	419, 490, 560, 598
NlaIV	GGNNCC	4 cut(s)	225, 451, 479, 522
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	2 cut(s)	419, 560
PaeI	GCATGC	1 cut(s)	560
PagI	TCATGA	1 cut(s)	486
PaqCI	CACCTGC	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	38, 635
PfeI	GAWTC	6 cut(s)	46, 65, 71, 92, 397, 499
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	4 cut(s)	225, 451, 479, 522
PspPI	GGNCC	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	520
PvuII	CAGCTG	2 cut(s)	15, 474
RsaI	GTAC	2 cut(s)	60, 176
RsaNI	GTAC	2 cut(s)	59, 175
RseI	CAYNNNNRTG	1 cut(s)	491
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	409, 520
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	388, 402
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	643
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	269, 536
SmoI	CTYRAG	2 cut(s)	269, 536
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	5 cut(s)	246, 256, 300, 359, 631
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	2 cut(s)	386, 400
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	176
TasI	AATT	5 cut(s)	246, 256, 300, 359, 631
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	6 cut(s)	46, 65, 71, 92, 397, 499
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	4 cut(s)	371, 476, 509, 695
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	2 cut(s)	419, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	614
XmnI	GAANNNNTTC	2 cut(s)	38, 635
XspI	CTAG	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.