Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Reverse (-)

45221657 .. 45222888

Gene Structure 1232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCAACTCCAGCGGTGGGTCTGATTTCTTGAAGAGTTTCAAGATTCCCAATTATGTACTTGAATCCGAATCAAAGCATGATCGGGAAGATTCTGATGAGCCCGAGTGTCCAGTTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCATCTTGGTGGCAATCTTCTTGTGACGTACCGTCAGCTCCTCAATGACTGGCAGGTTTTTGATGTGGGGGAAGAGGCTCCGGATAAGGTGCTGCGCCGAATTTATGTCAATCTAGAAACGCTCAAGCACAAGGGGGATGGATTTGCTACCAAGATTCAAGAGAAAGTGAGGATAATTGTTGCAGGTGGTGATGGAACTACTGGCTGGCTTCTTGGAGTTGTTTCTGATCTGAAATTAGCTCATCCGCCACCGATAGCAACAGTACCCTTAGGAACTGGAAACAATCTTCCATTTGCATTTGGCTGGCTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGAAGGTCCATTGGATCCCATTGCGCCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

172

Amino Acids

18.74

Weight (kDa)

5.65

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	38 - 153	2.9e-18	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	190, 320
AccB1I	GGYRCC	1 cut(s)	457
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	15, 392
AclWI	GGATC	2 cut(s)	495, 508
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	246
AfaI	GTAC	3 cut(s)	60, 176, 411
AfiI	CCNNNNNNNGG	2 cut(s)	18, 489
AgsI	TTSAA	4 cut(s)	34, 43, 65, 305
AhdI	GACNNNNNGTC	1 cut(s)	177
AluBI	AGCT	2 cut(s)	184, 386
AluI	AGCT	2 cut(s)	184, 386
AlwI	GGATC	2 cut(s)	495, 508
Ama87I	CYCGRG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	243, 512
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	492
AxyI	CCTNAGG	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	278, 332
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	2 cut(s)	190, 320
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	492
BmeRI	GACNNNNNGTC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	3 cut(s)	225, 459, 502
BpuEI	CTTGAG	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 489
Bse1I	ACTGG	4 cut(s)	113, 200, 352, 427
Bse21I	CCTNAGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	505
BseAI	TCCGGA	1 cut(s)	226
BseGI	GGATG	3 cut(s)	289, 388, 478
BseLI	CCNNNNNNNGG	2 cut(s)	18, 489
BseMI	GCAATG	1 cut(s)	505
BseNI	ACTGG	4 cut(s)	113, 200, 352, 427
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	18, 489
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	82, 373, 500
BspACI	CCGC	2 cut(s)	15, 392
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	3 cut(s)	225, 459, 502
BspMI	ACCTGC	2 cut(s)	190, 320
BspPI	GGATC	2 cut(s)	495, 508
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	4 cut(s)	113, 200, 352, 427
BssMI	GATC	3 cut(s)	82, 373, 500
Bst4CI	ACNGT	2 cut(s)	179, 409
Bst6I	CTCTTC	2 cut(s)	29, 213
BstC8I	GCNNGC	3 cut(s)	353, 452, 456
BstDEI	CTNAG	1 cut(s)	415
BstF5I	GGATG	3 cut(s)	289, 388, 478
BstHHI	GCGC	2 cut(s)	243, 512
BstKTI	GATC	3 cut(s)	85, 376, 503
BstMBI	GATC	3 cut(s)	82, 373, 500
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
Bsu36I	CCTNAGG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	289, 388, 478
BveI	ACCTGC	2 cut(s)	190, 320
Cac8I	GCNNGC	3 cut(s)	353, 452, 456
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	2 cut(s)	243, 512
Cfr13I	GGNCC	1 cut(s)	492
Csp6I	GTAC	3 cut(s)	59, 175, 410
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	2 cut(s)	80, 467
CviJI	RGCY	9 cut(s)	5, 103, 184, 224, 351, 355, 386, 450, 454
CviKI_1	RGCY	9 cut(s)	5, 103, 184, 224, 351, 355, 386, 450, 454
CviQI	GTAC	3 cut(s)	59, 175, 410
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	3 cut(s)	84, 375, 502
DpnII	GATC	3 cut(s)	82, 373, 500
DriI	GACNNNNNGTC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	29, 213
Eam1105I	GACNNNNNGTC	1 cut(s)	177
EarI	CTCTTC	2 cut(s)	29, 213
EciI	GGCGGA	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	492
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	83, 470
FaiI	YATR	4 cut(s)	57, 81, 252, 468
FatI	CATG	2 cut(s)	79, 466
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	3 cut(s)	296, 375, 485
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	2 cut(s)	242, 511
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	2 cut(s)	243, 512
Hin1II	CATG	2 cut(s)	83, 470
Hin6I	GCGC	2 cut(s)	241, 510
HinP1I	GCGC	2 cut(s)	241, 510
HinfI	GANTC	6 cut(s)	46, 65, 71, 92, 301, 479
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	5 cut(s)	25, 70, 97, 373, 378
Hpy188III	TCNNGA	8 cut(s)	31, 43, 86, 227, 260, 305, 467, 516
HpyAV	CCTTC	2 cut(s)	471, 483
HpyCH4III	ACNGT	2 cut(s)	179, 409
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	329, 443
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	83, 470
HspAI	GCGC	2 cut(s)	241, 510
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	82, 373, 500
LmnI	GCTCC	2 cut(s)	189, 229
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	84, 375, 502
MboI	GATC	3 cut(s)	82, 373, 500
MboII	GAAGA	6 cut(s)	46, 101, 155, 230, 425, 488
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	52, 246, 321, 380
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	197, 214, 309, 463
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	153, 471
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	82, 373, 500
NlaIII	CATG	2 cut(s)	83, 470
NlaIV	GGNNCC	3 cut(s)	225, 459, 502
NmuCI	GTSAC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	466
PaqCI	CACCTGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	6 cut(s)	46, 65, 71, 92, 301, 479
PkrI	GCNGC	1 cut(s)	240
PspN4I	GGNNCC	3 cut(s)	225, 459, 502
PspPI	GGNCC	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	3 cut(s)	60, 176, 411
RsaNI	GTAC	3 cut(s)	59, 175, 410
RseI	CAYNNNNRTG	2 cut(s)	153, 471
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	82, 373, 500
Sau96I	GGNCC	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	8 cut(s)	176, 186, 204, 237, 334, 388, 463, 494
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	153, 471
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	52, 246, 321, 380
SsiI	CCGC	2 cut(s)	15, 392
SspMI	CTAG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	179, 409
TaiI	ACGT	1 cut(s)	176
TasI	AATT	4 cut(s)	52, 246, 321, 380
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	6 cut(s)	46, 65, 71, 92, 301, 479
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.