Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Reverse (-)

30411090 .. 30413339

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG248400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATGCTCAAATATCATATGATTTTCATGCTCAGAGAAAGTTGCACGCTGAAAAGTTTAACAACCAGTTAATTAATCAAAGTACTTACTTCAAGCTTGGATGTACTCAAGGATGGTTCTTTGCTTCTCTAATGCATCCTTCTTCAAGGAATATAGCACATCTGACAAAGATTAAGATCATGAAAAGACAAGGTCATTGGGAGGAGCTTCACATATCTCCCAGCATTAGGTCTATTGTTTGCCTCAATTTACCCAGTTTTTCTGGTGGTCTTGATCCATGGGGGAAGCCAAATAGAAAGAAACTGCGATATCGGGATTTAACTCCTCCATATGTGGATGATGGCCTTCTTGAGATTGTTGGCTTTAGAGATGCCTGGCATGGGCTTGCGTTACTTGCTCCTAAGGGACATGGGACTCGTCTTGCACAAGCACACGGAATACGTTTTGAGTTTTGCAAGGGCGCAGTCGACCATACATTCATGAGAATTGATGGGGAGCCATGGAAACAACCTCTTCCAGTTGACGATGACACGGTGGTTGTAGAAATTTCTCACTTTGGCCAAGTAAGCATGCTTGCCACGCCATCGAAGCGATCCAAAAGTATATCTGACCCTGCGTCACCAGCTAGCTCCCATGATGACGATGATGATAGTAGTAATGAGGAAGAATATCCAGAAGATAGTGGAGAGAGAAGGAAGTTTGGTGCATCTGACACATTTAAAATCCCGGACGGGATTGACATTGCTCATTTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007610 GO:0007635 GO:0008150 GO:0009266 GO:0009605 GO:0009628 GO:0010646 GO:0023051 GO:0040011 GO:0042048 GO:0042221 GO:0042330 GO:0043052 GO:0048167 GO:0048168 GO:0048169 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0065007 GO:0065008 GO:0099177

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

252

Amino Acids

28.41

Weight (kDa)

6.34

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_acc	PF00609	1 - 167	1e-30	Diacylglycerol kinase accessory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	269, 588
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	546
AfaI	GTAC	2 cut(s)	85, 106
AfiI	CCNNNNNNNGG	2 cut(s)	228, 381
AgsI	TTSAA	2 cut(s)	94, 147
AhdI	GACNNNNNGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	97, 208, 626, 630
AluI	AGCT	4 cut(s)	97, 208, 626, 630
AlwI	GGATC	2 cut(s)	269, 588
AoxI	GGCC	2 cut(s)	343, 559
ApoI	RAATTY	1 cut(s)	546
AseI	ATTAAT	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	1 cut(s)	612
AsuNHI	GCTAGC	1 cut(s)	626
AxyI	CCTNAGG	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	561
BccI	CCATC	4 cut(s)	108, 335, 485, 592
BciT130I	CCWGG	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	728
BfaI	CTAG	1 cut(s)	627
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	376, 728
BmeRI	GACNNNNNGTC	1 cut(s)	616
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	2 cut(s)	376, 728
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	145, 361, 716
BmtI	GCTAGC	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	93, 371
BpuMI	CCSGG	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	278, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 381
Bse1I	ACTGG	3 cut(s)	67, 255, 518
Bse21I	CCTNAGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	741
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	2 cut(s)	278, 500
BseGI	GGATG	5 cut(s)	10, 107, 119, 136, 343
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	228, 381
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	3 cut(s)	67, 255, 518
BseRI	GAGGAG	2 cut(s)	218, 315
BseYI	CCCAGC	1 cut(s)	221
BshFI	GGCC	2 cut(s)	345, 561
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	2 cut(s)	420, 427
BslI	CCNNNNNNNGG	2 cut(s)	228, 381
BsmFI	GGGAC	2 cut(s)	420, 427
BsnI	GGCC	2 cut(s)	345, 561
Bsp143I	GATC	3 cut(s)	177, 274, 593
Bsp19I	CCATGG	2 cut(s)	278, 500
BspANI	GGCC	2 cut(s)	345, 561
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	2 cut(s)	180, 480
BspLI	GGNNCC	1 cut(s)	498
BspOI	GCTAGC	1 cut(s)	630
BspPI	GGATC	2 cut(s)	269, 588
BsrDI	GCAATG	1 cut(s)	741
BsrI	ACTGG	3 cut(s)	67, 255, 518
BssECI	CCNNGG	2 cut(s)	278, 500
BssMI	GATC	3 cut(s)	177, 274, 593
BssT1I	CCWWGG	2 cut(s)	278, 500
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	1 cut(s)	519
BstC8I	GCNNGC	5 cut(s)	48, 387, 572, 576, 628
BstDEI	CTNAG	2 cut(s)	33, 402
BstDSI	CCRYGG	2 cut(s)	278, 500
BstF5I	GGATG	5 cut(s)	10, 107, 119, 136, 343
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	3 cut(s)	180, 277, 596
BstMBI	GATC	3 cut(s)	177, 274, 593
BstMWI	GCNNNNNNNGC	5 cut(s)	395, 567, 580, 589, 623
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	374, 726
Bsu36I	CCTNAGG	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	345, 561
BtgI	CCRYGG	2 cut(s)	278, 500
BtsCI	GGATG	5 cut(s)	10, 107, 119, 136, 343
Cac8I	GCNNGC	5 cut(s)	48, 387, 572, 576, 628
CciI	TCATGA	2 cut(s)	180, 480
CfoI	GCGC	1 cut(s)	464
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	84, 105
CviAII	CATG	9 cut(s)	29, 181, 279, 380, 410, 481, 501, 571, 635
CviQI	GTAC	2 cut(s)	84, 105
DdeI	CTNAG	2 cut(s)	33, 402
DpnI	GATC	3 cut(s)	179, 276, 595
DpnII	GATC	3 cut(s)	177, 274, 593
DraI	TTTAAA	1 cut(s)	721
DriI	GACNNNNNGTC	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	519
Eam1105I	GACNNNNNGTC	1 cut(s)	616
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	278, 500
Eco32I	GATATC	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	374
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	278, 500
EcoT22I	ATGCAT	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	278, 500
FaeI	CATG	9 cut(s)	32, 184, 282, 383, 413, 484, 504, 574, 638
FaqI	GGGAC	2 cut(s)	420, 427
FatI	CATG	9 cut(s)	28, 180, 278, 379, 409, 480, 500, 570, 634
FauNDI	CATATG	2 cut(s)	19, 331
FblI	GTMKAC	1 cut(s)	468
FokI	GGATG	5 cut(s)	17, 114, 123, 126, 350
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	463
GsaI	CCCAGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	345, 561
HapII	CCGG	1 cut(s)	728
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	9 cut(s)	32, 184, 282, 383, 413, 484, 504, 574, 638
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HincII	GTYRAC	2 cut(s)	469, 523
HindII	GTYRAC	2 cut(s)	469, 523
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	415
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	1 cut(s)	612
Hpy166II	GTNNAC	2 cut(s)	469, 523
Hpy188I	TCNGA	4 cut(s)	36, 165, 610, 712
Hpy188III	TCNNGA	6 cut(s)	181, 272, 314, 350, 481, 674
Hpy8I	GTNNAC	2 cut(s)	469, 523
HpyAV	CCTTC	3 cut(s)	150, 356, 687
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	46, 136, 425, 456, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	395, 567, 580, 589, 623
HpyF3I	CTNAG	2 cut(s)	33, 402
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	9 cut(s)	32, 184, 282, 383, 413, 484, 504, 574, 638
HspAI	GCGC	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	177, 274, 593
LmnI	GCTCC	4 cut(s)	205, 403, 496, 635
LweI	GCATC	3 cut(s)	145, 361, 716
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	2 cut(s)	390, 618
MalI	GATC	3 cut(s)	179, 276, 595
MboI	GATC	3 cut(s)	177, 274, 593
MboII	GAAGA	4 cut(s)	135, 506, 677, 689
MlsI	TGGCCA	1 cut(s)	561
MluCI	AATT	4 cut(s)	72, 247, 486, 546
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	409
MnlI	CCTC	5 cut(s)	196, 254, 336, 522, 655
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	561
MseI	TTAA	6 cut(s)	60, 71, 75, 174, 320, 720
Msp20I	TGGCCA	1 cut(s)	561
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	2 cut(s)	376, 728
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	5 cut(s)	395, 567, 580, 589, 623
NciI	CCSGG	1 cut(s)	728
NcoI	CCATGG	2 cut(s)	278, 500
NdeI	CATATG	2 cut(s)	19, 331
NdeII	GATC	3 cut(s)	177, 274, 593
NheI	GCTAGC	1 cut(s)	626
NlaIII	CATG	9 cut(s)	32, 184, 282, 383, 413, 484, 504, 574, 638
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	618
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	1 cut(s)	574
PacI	TTAATTAA	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	574
PagI	TCATGA	2 cut(s)	180, 480
PflFI	GACNNNGTC	1 cut(s)	192
PfoI	TCCNGGA	1 cut(s)	726
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PshBI	ATTAAT	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	498
PsyI	GACNNNGTC	1 cut(s)	192
RsaI	GTAC	2 cut(s)	85, 106
RsaNI	GTAC	2 cut(s)	84, 105
SalI	GTCGAC	1 cut(s)	467
SaqAI	TTAA	6 cut(s)	60, 71, 75, 174, 320, 720
Sau3AI	GATC	3 cut(s)	177, 274, 593
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	376, 728
SetI	ASST	8 cut(s)	99, 196, 210, 233, 445, 514, 628, 632
SfaNI	GCATC	3 cut(s)	145, 361, 716
SmlI	CTYRAG	2 cut(s)	108, 350
SmoI	CTYRAG	2 cut(s)	108, 350
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	4 cut(s)	72, 247, 486, 546
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	2 cut(s)	374, 726
StyI	CCWWGG	2 cut(s)	278, 500
TaaI	ACNGT	1 cut(s)	535
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	468, 587
TasI	AATT	4 cut(s)	72, 247, 486, 546
TatI	WGTACW	2 cut(s)	83, 104
Tru1I	TTAA	6 cut(s)	60, 71, 75, 174, 320, 720
Tru9I	TTAA	6 cut(s)	60, 71, 75, 174, 320, 720
TseFI	GTSAC	1 cut(s)	618
Tsp45I	GTSAC	1 cut(s)	618
TspDTI	ATGAA	3 cut(s)	17, 197, 469
TspGWI	ACGGA	1 cut(s)	450
Tth111I	GACNNNGTC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	1 cut(s)	546
XceI	RCATGY	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.