Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

78384492 .. 78404324

Gene Structure 19833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG568500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATCTGGGGGTGTGCGGCTACTCTCTAGGGAGGGCTTCCATACATTTCGTGGGGGATTTTGGAATTACTTCAGTATGGGAATATAGCTCAATTTGCAAAGGTGATGATTATAAAAAACCATGGGGATCAATGGGAAGAGCTCCTCCTTCCTCACAGGCATTCACCCCTCCATATGTAGATGATGGCCATTTAGAGGTTGTAGGTTTTACTTCTGCTTGGCATGGACTTGTATTGCTTGCGCCAAATGGACATGGGACTCGTCTTGCTCAGGCCCACCGAATCAAATTTCTGTTTCACAAAGGTGCAATTGATCAGACGTACATGAGAATTGATGGGGAACCCTGGAGGCAACCCCTTCCATCTGATGATGACACTGTGATGGTGGAAATCTCTCACCTTGGCCAGGTCAACATTCTCGCTACCAATGGCTGCAGGTCTAAAAGTATGCACAATCCCTCAACACCTACAGCTCAGGAAGAGGAAGGAGTTGACTCCGATGAAGAAAATCTTGAAGCAGAGTTCAGGAAGTTTGGTGCAGCAGACACATTCAAGCTTCCGGACGAAATTGATATTTCTCATCTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

196

Amino Acids

21.58

Weight (kDa)

5.04

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_acc	PF00609	41 - 115	8.8e-10	Diacylglycerol kinase accessory domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	426
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	12, 136
AcoI	YGGCCR	2 cut(s)	187, 403
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	196, 406
AgsI	TTSAA	2 cut(s)	515, 553
AjnI	CCWGG	2 cut(s)	344, 405
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	90, 143, 473, 556
AluI	AGCT	4 cut(s)	90, 143, 473, 556
Alw21I	GWGCWC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	12, 136
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	3 cut(s)	187, 273, 403
ApeKI	GCWGC	2 cut(s)	432, 539
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	116, 157, 389
BalI	TGGCCA	2 cut(s)	189, 405
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	419, 551
BccI	CCATC	4 cut(s)	179, 329, 370, 376
BciT130I	CCWGG	2 cut(s)	346, 407
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	433, 468
BfuAI	ACCTGC	1 cut(s)	426
BisI	GCNGC	3 cut(s)	19, 433, 540
BlsI	GCNGC	3 cut(s)	20, 434, 541
Bme1390I	CCNGG	2 cut(s)	346, 407
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	2 cut(s)	346, 407
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	2 cut(s)	270, 474
BsaJI	CCNNGG	3 cut(s)	122, 344, 400
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 406
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	346, 407
BseDI	CCNNGG	3 cut(s)	122, 344, 400
BseLI	CCNNNNNNNGG	2 cut(s)	196, 406
BseMII	CTCAG	2 cut(s)	284, 488
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	419, 551
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	189, 275, 405
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	196, 406
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	189, 275, 405
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	4, 128, 313
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	3 cut(s)	189, 275, 405
BspCNI	CTCAG	2 cut(s)	283, 487
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	342
BspMAI	CTGCAG	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	426
BspPI	GGATC	2 cut(s)	12, 136
BspQI	GCTCTTC	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	122, 344, 400
BssMI	GATC	3 cut(s)	4, 128, 313
BssT1I	CCWWGG	2 cut(s)	122, 400
Bst2UI	CCWGG	2 cut(s)	346, 407
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	133, 474
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	270, 474, 584
BstDSI	CCRYGG	1 cut(s)	122
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	3 cut(s)	7, 131, 316
BstMBI	GATC	3 cut(s)	4, 128, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	2 cut(s)	346, 407
BstSCI	CCNGG	2 cut(s)	344, 405
BstSFI	CTRYAG	2 cut(s)	433, 468
BstV1I	GCAGC	2 cut(s)	419, 551
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	189, 275, 405
BtgI	CCRYGG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	123, 224, 254, 325
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	270, 474, 584
DpnI	GATC	3 cut(s)	6, 130, 315
DpnII	GATC	3 cut(s)	4, 128, 313
EaeI	YGGCCR	2 cut(s)	187, 403
Eam1104I	CTCTTC	2 cut(s)	133, 474
EarI	CTCTTC	2 cut(s)	133, 474
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	122, 400
Eco24I	GRGCYC	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	344, 405
EcoT14I	CCWWGG	2 cut(s)	122, 400
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	122, 400
FaeI	CATG	4 cut(s)	126, 227, 257, 328
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	4 cut(s)	122, 223, 253, 324
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	19, 433, 540
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	19, 433, 540
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	3 cut(s)	19, 433, 540
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	3 cut(s)	189, 275, 405
HapII	CCGG	1 cut(s)	560
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	126, 227, 257, 328
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	2 cut(s)	412, 493
HindII	GTYRAC	2 cut(s)	412, 493
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	3 cut(s)	259, 282, 494
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	3 cut(s)	116, 157, 389
Hpy166II	GTNNAC	2 cut(s)	412, 493
Hpy188I	TCNGA	3 cut(s)	318, 367, 499
Hpy188III	TCNNGA	4 cut(s)	476, 512, 526, 560
Hpy8I	GTNNAC	2 cut(s)	412, 493
HpyAV	CCTTC	3 cut(s)	159, 368, 479
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	5 cut(s)	99, 308, 435, 451, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	270, 474, 584
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	4 cut(s)	126, 227, 257, 328
HspAI	GCGC	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	4, 128, 313
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	419, 551
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	320
MalI	GATC	3 cut(s)	6, 130, 315
MboI	GATC	3 cut(s)	4, 128, 313
MboII	GAAGA	3 cut(s)	150, 491, 515
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	145
MlsI	TGGCCA	2 cut(s)	189, 405
MluCI	AATT	6 cut(s)	66, 93, 287, 309, 330, 567
MluNI	TGGCCA	2 cut(s)	189, 405
MlyI	GAGTC	2 cut(s)	253, 488
MnlI	CCTC	8 cut(s)	27, 156, 163, 180, 190, 342, 469, 475
Mox20I	TGGCCA	2 cut(s)	189, 405
MroI	TCCGGA	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	70
MscI	TGGCCA	2 cut(s)	189, 405
MseI	TTAA	1 cut(s)	589
MslI	CAYNNNNRTG	2 cut(s)	303, 380
Msp20I	TGGCCA	2 cut(s)	189, 405
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	2 cut(s)	346, 407
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	2 cut(s)	346, 407
MwoI	GCNNNNNNNGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	3 cut(s)	4, 128, 313
NlaIII	CATG	4 cut(s)	126, 227, 257, 328
NlaIV	GGNNCC	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	303
PciSI	GCTCTTC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	20, 434, 541
PleI	GAGTC	2 cut(s)	253, 488
PpsI	GAGTC	2 cut(s)	253, 488
PsiI	TTATAA	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	344, 405
PspGI	CCWGG	2 cut(s)	344, 405
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	303, 380
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	589
SatI	GCNGC	3 cut(s)	19, 433, 540
Sau3AI	GATC	3 cut(s)	4, 128, 313
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	253, 488
ScrFI	CCNGG	2 cut(s)	346, 407
SduI	GDGCHC	1 cut(s)	145
SfcI	CTRYAG	2 cut(s)	433, 468
SmiMI	CAYNNNNRTG	2 cut(s)	303, 380
Sse9I	AATT	6 cut(s)	66, 93, 287, 309, 330, 567
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	344, 405
StyI	CCWWGG	2 cut(s)	122, 400
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	323
TasI	AATT	6 cut(s)	66, 93, 287, 309, 330, 567
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	589
Tru9I	TTAA	1 cut(s)	589
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	432, 539
TspDTI	ATGAA	1 cut(s)	516
TspRI	CASTG	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	404
XapI	RAATTY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.