Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040460.1

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

7232 .. 8045

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040460.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtacaacagcatcaagtcgatagtctgcctcaatttgcctagcttttctggtggatttaatccttggggaacaccacgtagacggaagcataatgcattcacccctccatatgtagatgatggccatttagaggttgtaggttttacttctgcttggcatggacttgtattgcttgcgccaaatggacatgggactcgtcttgctcaggcccaccgaatcaaatttctgtttcacaaaggtgcaattgatcagacgtacatgagaattgatggggaaccctggaggcaaccccttccatctgatgatgacactgtgatggtggaaatctctcaccttggccaggtcaacattctcgctaccaatggctgcaggtctaaaagtatgcacaatccctcaacacctacagctcaggaagaggaaggagttgactcagacgaagaaactcttgaagcagagttcaggaagtttggtgcagcagacacattcaagcttccggacgaaattgatatttctcatcttagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

5.66

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	496
AcoI	YGGCCR	2 cut(s)	124, 340
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	2 cut(s)	5, 260
AfiI	CCNNNNNNNGG	2 cut(s)	133, 343
AgsI	TTSAA	2 cut(s)	452, 490
AjnI	CCWGG	2 cut(s)	281, 342
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	45, 410, 493
AluI	AGCT	3 cut(s)	45, 410, 493
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	3 cut(s)	124, 210, 340
ApeKI	GCWGC	2 cut(s)	369, 476
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	94, 326
BalI	TGGCCA	2 cut(s)	126, 342
BbvI	GCAGC	2 cut(s)	356, 488
BccI	CCATC	4 cut(s)	116, 266, 307, 313
BciT130I	CCWGG	2 cut(s)	283, 344
BclI	TGATCA	1 cut(s)	250
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	370, 405
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	2 cut(s)	370, 477
BlsI	GCNGC	2 cut(s)	371, 478
Bme1390I	CCNGG	2 cut(s)	283, 344
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	283, 344
BmsI	GCATC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	304
Bpu10I	CCTNAGC	2 cut(s)	207, 411
BsaAI	YACGTR	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	65, 281, 337
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 343
BseAI	TCCGGA	1 cut(s)	496
BseBI	CCWGG	2 cut(s)	283, 344
BseDI	CCNNGG	3 cut(s)	65, 281, 337
BseLI	CCNNNNNNNGG	2 cut(s)	133, 343
BseMII	CTCAG	3 cut(s)	221, 425, 447
BseXI	GCAGC	2 cut(s)	356, 488
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	126, 212, 342
BsiSI	CCGG	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	133, 343
BsmFI	GGGAC	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	126, 212, 342
Bsp13I	TCCGGA	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	3 cut(s)	126, 212, 342
BspCNI	CTCAG	3 cut(s)	220, 424, 446
BspEI	TCCGGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	374
BspMI	ACCTGC	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	3 cut(s)	65, 281, 337
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	2 cut(s)	65, 337
Bst2UI	CCWGG	2 cut(s)	283, 344
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	411
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	207, 411, 433, 521
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	283, 344
BstSCI	CCNGG	2 cut(s)	281, 342
BstSFI	CTRYAG	2 cut(s)	370, 405
BstV1I	GCAGC	2 cut(s)	356, 488
BsuRI	GGCC	3 cut(s)	126, 212, 342
BtsIMutI	CAGTG	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	4, 259
CviAII	CATG	3 cut(s)	161, 191, 262
CviJI	RGCY	7 cut(s)	45, 126, 212, 342, 369, 410, 493
CviKI_1	RGCY	7 cut(s)	45, 126, 212, 342, 369, 410, 493
CviQI	GTAC	2 cut(s)	4, 259
DdeI	CTNAG	4 cut(s)	207, 411, 433, 521
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	124, 340
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	65, 337
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	281, 342
EcoT14I	CCWWGG	2 cut(s)	65, 337
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	2 cut(s)	65, 337
FaeI	CATG	3 cut(s)	164, 194, 265
FaiI	YATR	7 cut(s)	93, 112, 114, 162, 192, 263, 386
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	3 cut(s)	160, 190, 261
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	370, 477
Fsp4HI	GCNGC	2 cut(s)	370, 477
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	2 cut(s)	370, 477
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	3 cut(s)	126, 212, 342
HapII	CCGG	1 cut(s)	497
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	3 cut(s)	164, 194, 265
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	2 cut(s)	349, 430
HindII	GTYRAC	2 cut(s)	349, 430
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	3 cut(s)	196, 219, 431
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	2 cut(s)	94, 326
Hpy166II	GTNNAC	3 cut(s)	83, 349, 430
Hpy188I	TCNGA	3 cut(s)	255, 304, 436
Hpy188III	TCNNGA	4 cut(s)	413, 449, 463, 497
Hpy8I	GTNNAC	3 cut(s)	83, 349, 430
HpyAV	CCTTC	2 cut(s)	305, 416
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	79, 257
HpyCH4V	TGCA	5 cut(s)	98, 245, 372, 388, 476
HpyF3I	CTNAG	4 cut(s)	207, 411, 433, 521
HpySE526I	ACGT	2 cut(s)	79, 257
Hsp92II	CATG	3 cut(s)	164, 194, 265
HspAI	GCGC	1 cut(s)	179
Kpn2I	TCCGGA	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
Lsp1109I	GCAGC	2 cut(s)	356, 488
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	2 cut(s)	79, 257
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	428, 452
MfeI	CAATTG	1 cut(s)	246
MlsI	TGGCCA	2 cut(s)	126, 342
MluCI	AATT	5 cut(s)	34, 224, 246, 267, 504
MluNI	TGGCCA	2 cut(s)	126, 342
MlyI	GAGTC	2 cut(s)	190, 425
MnlI	CCTC	6 cut(s)	41, 117, 127, 279, 406, 412
Mox20I	TGGCCA	2 cut(s)	126, 342
Mph1103I	ATGCAT	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	496
MscI	TGGCCA	2 cut(s)	126, 342
MseI	TTAA	2 cut(s)	60, 526
MslI	CAYNNNNRTG	2 cut(s)	240, 317
Msp20I	TGGCCA	2 cut(s)	126, 342
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	283, 344
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	2 cut(s)	283, 344
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	164, 194, 265
NlaIV	GGNNCC	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	240
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	371, 478
PleI	GAGTC	2 cut(s)	190, 425
PpsI	GAGTC	2 cut(s)	190, 425
Ppu21I	YACGTR	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	281, 342
PspGI	CCWGG	2 cut(s)	281, 342
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	5, 260
RsaNI	GTAC	2 cut(s)	4, 259
RseI	CAYNNNNRTG	2 cut(s)	240, 317
SaqAI	TTAA	2 cut(s)	60, 526
SatI	GCNGC	2 cut(s)	370, 477
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	190, 425
ScrFI	CCNGG	2 cut(s)	283, 344
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	2 cut(s)	370, 405
SmiMI	CAYNNNNRTG	2 cut(s)	240, 317
Sse9I	AATT	5 cut(s)	34, 224, 246, 267, 504
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	281, 342
StyI	CCWWGG	2 cut(s)	65, 337
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	2 cut(s)	82, 260
TaqI	TCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	34, 224, 246, 267, 504
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	60, 526
Tru9I	TTAA	2 cut(s)	60, 526
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	369, 476
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	319
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	82
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.