Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

14330974 .. 14331477

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0154100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGCGTGTCAATACCAGCAAGTTTTGGACAACTGTCTCAGCTAGTTGACCTTGATCTGTCTTATAATTCATGGGAAGGCACCTTAACTGAAGCTCATCTCATAAACTTGACAAGGTTGGAGTCTTTTACATTGAGCACAGACCGTCCCATGCCCCTCATTTTTAGTGTGACTAATTATAAGTGGGTTCCTCCTTTCAAGCTCCACAAAATTGAGATCTACAATTGCCAAATAGGTCCTGCCTTTCCCATATGGCTACAATCTCAAACTCAACTCTCATATGTGATCCTTAGTCATACTGGAATCTTGGATTCCATATCTCAGGAGTGGTTCTTGAAAATTTCTTCCCAAGTTGAAGTTTTGGATTTATCTTACAATCAGATTCCTGGAAAGCTACCATTCCAATCCAAATTTCCAAAGTTGATTTTAATAAATCTGAGTAATAATCAATTTGATGGCCCTCTTCAGCTTTTGTCCACCAATGCATCTGTGGATACTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007610 GO:0007635 GO:0008150 GO:0009266 GO:0009605 GO:0009628 GO:0010646 GO:0023051 GO:0040011 GO:0042048 GO:0042221 GO:0042330 GO:0043052 GO:0048167 GO:0048168 GO:0048169 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0065007 GO:0065008 GO:0099177

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

167

Amino Acids

18.83

Weight (kDa)

5.19

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	66, 180
AccB1I	GGYRCC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	339, 410
AcuI	CTGAAG	2 cut(s)	111, 449
AgsI	TTSAA	3 cut(s)	199, 337, 356
AjnI	CCWGG	1 cut(s)	385
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	5 cut(s)	43, 95, 202, 394, 469
AluI	AGCT	5 cut(s)	43, 95, 202, 394, 469
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	1 cut(s)	457
ApoI	RAATTY	2 cut(s)	339, 410
AspS9I	GGNCC	2 cut(s)	236, 458
AvaII	GGWCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	140
BccI	CCATC	1 cut(s)	449
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	487
BglII	AGATCT	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	236, 458
BmiI	GGNNCC	2 cut(s)	82, 189
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	494
BoxI	GACNNNNGTC	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	304, 502
BseBI	CCWGG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	53, 335, 428
BseNI	ACTGG	2 cut(s)	304, 502
BshFI	GGCC	1 cut(s)	459
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	55, 216, 285
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	3 cut(s)	52, 334, 429
BspLI	GGNNCC	2 cut(s)	82, 189
BspPI	GGATC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	304, 502
BssMI	GATC	3 cut(s)	55, 216, 285
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	36, 146
Bst6I	CTCTTC	1 cut(s)	468
BstDEI	CTNAG	4 cut(s)	39, 290, 321, 437
BstKTI	GATC	3 cut(s)	58, 219, 288
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	55, 216, 285
BstNI	CCWGG	1 cut(s)	387
BstPAI	GACNNNNGTC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	236, 458
CviAII	CATG	2 cut(s)	72, 151
CviJI	RGCY	7 cut(s)	43, 95, 202, 256, 394, 459, 469
CviKI_1	RGCY	7 cut(s)	43, 95, 202, 256, 394, 459, 469
DdeI	CTNAG	4 cut(s)	39, 290, 321, 437
DpnI	GATC	3 cut(s)	57, 218, 287
DpnII	GATC	3 cut(s)	55, 216, 285
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	111, 449
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	487
FaeI	CATG	2 cut(s)	75, 154
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	71, 150
FauNDI	CATATG	2 cut(s)	251, 280
FspBI	CTAG	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	75, 154
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	122, 303, 311, 382
Hpy166II	GTNNAC	2 cut(s)	49, 477
Hpy188I	TCNGA	2 cut(s)	381, 438
Hpy188III	TCNNGA	2 cut(s)	323, 334
Hpy8I	GTNNAC	2 cut(s)	49, 477
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	36, 146
HpyCH4V	TGCA	1 cut(s)	485
HpyF3I	CTNAG	4 cut(s)	39, 290, 321, 437
Hsp92II	CATG	2 cut(s)	75, 154
Kzo9I	GATC	3 cut(s)	55, 216, 285
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	30, 252, 285, 308, 372, 399, 483
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	57, 218, 287
MboI	GATC	3 cut(s)	55, 216, 285
MboII	GAAGA	2 cut(s)	336, 455
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	7 cut(s)	67, 175, 210, 223, 339, 410, 449
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	3 cut(s)	167, 201, 471
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	2 cut(s)	86, 428
MspR9I	CCNGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	387
NdeI	CATATG	2 cut(s)	251, 280
NdeII	GATC	3 cut(s)	55, 216, 285
NlaIII	CATG	2 cut(s)	75, 154
NlaIV	GGNNCC	2 cut(s)	82, 189
NmuCI	GTSAC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	303, 311, 382
PfoI	TCCNGGA	1 cut(s)	385
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	236
PshAI	GACNNNNGTC	1 cut(s)	34
PsiI	TTATAA	2 cut(s)	66, 180
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	82, 189
PspPI	GGNCC	2 cut(s)	236, 458
PspPPI	RGGWCCY	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	86, 428
Sau3AI	GATC	3 cut(s)	55, 216, 285
Sau96I	GGNCC	2 cut(s)	236, 458
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	9 cut(s)	45, 54, 86, 97, 119, 204, 238, 396, 471
SfaNI	GCATC	1 cut(s)	494
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	7 cut(s)	67, 175, 210, 223, 339, 410, 449
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	36, 146
TasI	AATT	7 cut(s)	67, 175, 210, 223, 339, 410, 449
TfiI	GAWTC	3 cut(s)	303, 311, 382
Tru1I	TTAA	2 cut(s)	86, 428
Tru9I	TTAA	2 cut(s)	86, 428
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	339, 410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.