Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Reverse (-)

44653062 .. 44655866

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG359800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGTGGTATAGTTTTATCATGTCCAACCATATTCTCTCAGAGCCATAACGGGTTCAGTCTTGCCTTCTCTAGGATCTCTCACAATCCAAACCCCAATTTCCCGATCGGGTTCAGTGAGGGTGAAATAGAGATGGAAAATGGGAAAGAGATGAGTTCCAGTGAGTTTGTACAGAGAGATTGGGTCACTGATGAAGGCAATCCCAATCTTCAATTGTTCACTACCCATTTTGGAAGATCCAAAGTCCAGCCCCACCTCATTGGCAAAAGGTTAAGCAAAGAGAAGAAGGTTTTGTCTGAAATGGCCAACTCCAGCGGTGGGTCTGATTTGTTGAAGAGTTTCAAGATTCCCAAGTATGTACTTGAATCCGAATCAAAGCGTGATCGGGAAGATTCTGATGAGCCCGAGTGTCCAATTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCAGCTTGGTGGCAATCTTCTTGTTTTTGATGTGGGGGAAGAGGCTCCGGATAAGGTGCTGCGCCGAATTTATGTCAATCTAGAAACGCTCAAGCACAAGGGGGATGGATTTGCTACCAAGATTCAAGAGAAAGTGAGGATAATTGTTGCAGGTGGTGATGGAACTACTGGCTGGCTTCTTGGAGTTGTTTCTGATATGAAATTAGCTCATCCGCCACCGATAGCAACAGTACCCTTAGGAACTGGAAACAATCTTCCATTTGCATTTGGCTGGGGGAAGAAGAATCCTGGAACAGATCAACATGCTGTGGAGTCCTTTTTGCATCAAGTAAAGGGAGCCAAGGAAATGAAGATAGACAGCTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGGAGGTCCATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGTATGCCTTTGGCCGTGTCTCTAACACAAATGAGCTGAACATGGTAACTATCCTCCATCTCTATCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

319

Amino Acids

35.12

Weight (kDa)

6.87

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	139 - 251	1.2e-18	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	587
AccB1I	GGYRCC	1 cut(s)	810
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	2 cut(s)	315, 659
AclWI	GGATC	4 cut(s)	83, 231, 848, 861
AcoI	YGGCCR	2 cut(s)	303, 898
AcsI	RAATTY	1 cut(s)	513
AfaI	GTAC	3 cut(s)	171, 360, 678
AfiI	CCNNNNNNNGG	3 cut(s)	72, 318, 842
AgsI	TTSAA	5 cut(s)	212, 334, 343, 365, 572
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	5 cut(s)	451, 653, 807, 874, 922
AluI	AGCT	5 cut(s)	451, 653, 807, 874, 922
Alw26I	GTCTC	1 cut(s)	910
AlwI	GGATC	4 cut(s)	83, 231, 848, 861
Ama87I	CYCGRG	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	2 cut(s)	303, 898
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	510, 865
AspS9I	GGNCC	1 cut(s)	845
AsuHPI	GGTGA	2 cut(s)	134, 614
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	845
AxyI	CCTNAGG	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	492
BccI	CCATC	4 cut(s)	127, 545, 599, 951
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	1 cut(s)	735
BcoDI	GTCTC	1 cut(s)	910
BfaI	CTAG	2 cut(s)	72, 527
BfuAI	ACCTGC	1 cut(s)	587
BisI	GCNGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	507
Bme1390I	CCNGG	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	845
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	845
BmiI	GGNNCC	4 cut(s)	492, 784, 812, 855
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	1 cut(s)	778
BpmI	CTGGAG	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	521, 890
BsaJI	CCNNGG	1 cut(s)	786
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 318, 842
Bse1I	ACTGG	3 cut(s)	159, 619, 694
Bse21I	CCTNAGG	1 cut(s)	682
Bse3DI	GCAATG	1 cut(s)	858
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	1 cut(s)	786
BseGI	GGATG	3 cut(s)	556, 655, 831
BseLI	CCNNNNNNNGG	3 cut(s)	72, 318, 842
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	3 cut(s)	159, 619, 694
BseXI	GCAGC	1 cut(s)	492
BseYI	CCCAGC	1 cut(s)	717
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	305, 900
BshNI	GGYRCC	1 cut(s)	810
BsiEI	CGRYCG	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	3 cut(s)	72, 318, 842
BsmAI	GTCTC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	305, 900
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp13I	TCCGGA	1 cut(s)	493
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
BspACI	CCGC	2 cut(s)	315, 659
BspANI	GGCC	2 cut(s)	305, 900
BspCNI	CTCAG	1 cut(s)	52
BspEI	TCCGGA	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	4 cut(s)	492, 784, 812, 855
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	4 cut(s)	83, 231, 848, 861
BspT107I	GGYRCC	1 cut(s)	810
BsrDI	GCAATG	1 cut(s)	858
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	159, 619, 694
BssECI	CCNNGG	1 cut(s)	786
BssMI	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	676, 956
Bst6I	CTCTTC	2 cut(s)	329, 480
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	620, 809
BstDEI	CTNAG	2 cut(s)	39, 682
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	3 cut(s)	556, 655, 831
BstHHI	GCGC	2 cut(s)	510, 865
BstKTI	GATC	6 cut(s)	78, 108, 239, 385, 745, 856
BstMAI	GTCTC	1 cut(s)	910
BstMBI	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	871
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	733
BstV1I	GCAGC	1 cut(s)	492
BstX2I	RGATCY	3 cut(s)	75, 236, 853
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	3 cut(s)	75, 236, 853
Bsu36I	CCTNAGG	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	305, 900
BtsCI	GGATG	3 cut(s)	556, 655, 831
BtsIMutI	CAGTG	3 cut(s)	121, 166, 186
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	620, 809
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	2 cut(s)	510, 865
Cfr13I	GGNCC	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	170, 359, 677
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	4 cut(s)	21, 749, 820, 928
CviQI	GTAC	3 cut(s)	170, 359, 677
DdeI	CTNAG	2 cut(s)	39, 682
DpnI	GATC	6 cut(s)	77, 107, 238, 384, 744, 855
DpnII	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
EaeI	YGGCCR	2 cut(s)	303, 898
Eam1104I	CTCTTC	2 cut(s)	329, 480
EarI	CTCTTC	2 cut(s)	329, 480
EciI	GGCGGA	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	845
Eco81I	CCTNAGG	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	4 cut(s)	24, 752, 823, 931
FatI	CATG	4 cut(s)	20, 748, 819, 927
Fnu4HI	GCNGC	1 cut(s)	506
FokI	GGATG	3 cut(s)	563, 642, 838
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	506
FspBI	CTAG	2 cut(s)	72, 527
GlaI	GCGC	2 cut(s)	509, 864
GluI	GCNGC	1 cut(s)	506
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	305, 900
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	2 cut(s)	510, 865
Hin1II	CATG	4 cut(s)	24, 752, 823, 931
Hin6I	GCGC	2 cut(s)	508, 863
HinP1I	GCGC	2 cut(s)	508, 863
HinfI	GANTC	8 cut(s)	346, 365, 371, 392, 568, 730, 758, 832
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	134, 614
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	6 cut(s)	42, 298, 325, 370, 397, 640
Hpy188III	TCNNGA	8 cut(s)	103, 343, 386, 494, 527, 572, 820, 869
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	4 cut(s)	76, 188, 280, 824
HpyCH4III	ACNGT	2 cut(s)	676, 956
HpyCH4V	TGCA	3 cut(s)	596, 710, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	871
HpyF3I	CTNAG	2 cut(s)	39, 682
Hsp92II	CATG	4 cut(s)	24, 752, 823, 931
HspAI	GCGC	2 cut(s)	508, 863
Kpn2I	TCCGGA	1 cut(s)	493
Kzo9I	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
LmnI	GCTCC	2 cut(s)	496, 782
Lsp1109I	GCAGC	1 cut(s)	492
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	2 cut(s)	72, 527
MaeIII	GTNAC	2 cut(s)	184, 931
MalI	GATC	6 cut(s)	77, 107, 238, 384, 744, 855
MboI	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	3 cut(s)	75, 236, 853
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	6 cut(s)	97, 212, 414, 513, 588, 647
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	767
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	8 cut(s)	112, 266, 481, 576, 816, 836, 876, 950
Mox20I	TGGCCA	1 cut(s)	305
MroI	TCCGGA	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	2 cut(s)	272, 958
MslI	CAYNNNNRTG	1 cut(s)	824
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	315, 807
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	735
MunI	CAATTG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	1 cut(s)	871
NdeII	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
NlaIII	CATG	4 cut(s)	24, 752, 823, 931
NlaIV	GGNNCC	4 cut(s)	492, 784, 812, 855
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	752
PagI	TCATGA	1 cut(s)	819
PaqCI	CACCTGC	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	7 cut(s)	346, 365, 371, 392, 568, 730, 832
PfoI	TCCNGGA	1 cut(s)	733
PkrI	GCNGC	1 cut(s)	507
Ple19I	CGATCG	1 cut(s)	108
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
Psp6I	CCWGG	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	4 cut(s)	492, 784, 812, 855
PspPI	GGNCC	1 cut(s)	845
PsuI	RGATCY	3 cut(s)	75, 236, 853
PvuI	CGATCG	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	807
RsaI	GTAC	3 cut(s)	171, 360, 678
RsaNI	GTAC	3 cut(s)	170, 359, 677
RseI	CAYNNNNRTG	1 cut(s)	824
SaqAI	TTAA	2 cut(s)	272, 958
SatI	GCNGC	1 cut(s)	506
Sau3AI	GATC	6 cut(s)	75, 105, 236, 382, 742, 853
Sau96I	GGNCC	1 cut(s)	845
SchI	GAGTC	1 cut(s)	767
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	778
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	2 cut(s)	536, 869
SmoI	CTYRAG	2 cut(s)	536, 869
Sse9I	AATT	6 cut(s)	97, 212, 414, 513, 588, 647
SsiI	CCGC	2 cut(s)	315, 659
SspMI	CTAG	2 cut(s)	72, 527
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	2 cut(s)	676, 956
TasI	AATT	6 cut(s)	97, 212, 414, 513, 588, 647
TatI	WGTACW	2 cut(s)	169, 358
TfiI	GAWTC	7 cut(s)	346, 365, 371, 392, 568, 730, 832
Tru1I	TTAA	2 cut(s)	272, 958
Tru9I	TTAA	2 cut(s)	272, 958
TscAI	CASTG	3 cut(s)	121, 166, 193
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	207, 659, 809, 842
TspRI	CASTG	3 cut(s)	121, 166, 193
VpaK11BI	GGWCC	1 cut(s)	845
XagI	CCTNNNNNAGG	1 cut(s)	70
XapI	RAATTY	1 cut(s)	513
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	2 cut(s)	72, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.