Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

30414014 .. 30418360

Gene Structure 4347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008429

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACGGACATTTCCGGGTTTGGGAGTTCGGTTTTGTCTGAAATTGCCAACTCCAGCTGTGGGTCTGATTTCTTGAAGAGTTTCAAGATTCCCAAGTATCCCGAGTGTCCAGTTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCAGCTTGGTGGCAATCTTCTTGTGACGTACCGTCAGCTCCTCAATGACTGGCAGGTTTTTGATGTGGGGGAAGAGGCTCCGGATAAGGTGCTGCACCGAATTTATGTCAATCTAGAAACGCTCAAGCACAAGGGGGATGGATTTGCTACCAAGATTCAAGAGAAACTGAGGATAATTGTTGCAGGTGGTGATGGAACTGCTGGCTGGCTTCTTGGAGTTGTTTCTGATATGAAATTAGCTCATCCGCCACCGATAGCAACAGTACCCTTAGGAACTGGAAACAATCTTCCATTTGCGTTTGGCTGGGGGAAGAAGAATCCTGGAACAGATCAACATGTTGTGGAGTCCTTTTTGCGTCAAGTAAAGGGAGCCAAGGAAATGAAGATAGACAGCTGGCACTTTCTCATGAGGATGAAGATTCCAAAAGGAGGTCCATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGTTGAATATGCAAGTTCATAATAGGAAGTTGCAATACAAAGCTCCTAGAACTGCTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

238

Amino Acids

25.97

Weight (kDa)

9.15

Isoelectric Point (pI)

25.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	37 - 164	3.8e-20	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	2 cut(s)	187, 317
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	2 cut(s)	578, 591
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	2 cut(s)	173, 408
AfiI	CCNNNNNNNGG	3 cut(s)	21, 60, 572
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	76, 85, 302, 655
AhdI	GACNNNNNGTC	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	7 cut(s)	57, 148, 181, 383, 537, 604, 692
AluI	AGCT	7 cut(s)	57, 148, 181, 383, 537, 604, 692
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	2 cut(s)	578, 591
Ama87I	CYCGRG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	1 cut(s)	628
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	583
BarI	GAAGNNNNNNTAC	2 cut(s)	668, 700
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	2 cut(s)	275, 329
BceAI	ACGGC	1 cut(s)	615
BciT130I	CCWGG	1 cut(s)	465
BciVI	GTATCC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	2 cut(s)	257, 696
BfuAI	ACCTGC	2 cut(s)	187, 317
BfuI	GTATCC	1 cut(s)	108
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	16, 465
Bme18I	GGWCC	1 cut(s)	575
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	3 cut(s)	222, 514, 585
BmrFI	CCNGG	2 cut(s)	16, 465
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	251, 620
BpuMI	CCSGG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 60, 572
Bse1I	ACTGG	3 cut(s)	110, 197, 424
Bse21I	CCTNAGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	286, 385, 561
BseLI	CCNNNNNNNGG	3 cut(s)	21, 60, 572
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	3 cut(s)	110, 197, 424
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	447
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	15, 224
BslI	CCNNNNNNNGG	3 cut(s)	21, 60, 572
BsmAI	GTCTC	1 cut(s)	640
BsnI	GGCC	1 cut(s)	630
BsoBI	CYCGRG	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	472, 583
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	3 cut(s)	222, 514, 585
BspMI	ACCTGC	2 cut(s)	187, 317
BspPI	GGATC	2 cut(s)	578, 591
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	3 cut(s)	110, 197, 424
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	2 cut(s)	472, 583
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	176, 406
Bst6I	CTCTTC	2 cut(s)	71, 210
BstC8I	GCNNGC	4 cut(s)	346, 350, 539, 621
BstDEI	CTNAG	2 cut(s)	311, 412
BstF5I	GGATG	3 cut(s)	286, 385, 561
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	2 cut(s)	475, 586
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	2 cut(s)	472, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	2 cut(s)	482, 623
BstSCI	CCNGG	2 cut(s)	14, 463
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	3 cut(s)	286, 385, 561
BveI	ACCTGC	2 cut(s)	187, 317
Cac8I	GCNNGC	4 cut(s)	346, 350, 539, 621
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	172, 407
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	3 cut(s)	479, 550, 620
CviQI	GTAC	2 cut(s)	172, 407
DdeI	CTNAG	2 cut(s)	311, 412
DpnI	GATC	2 cut(s)	474, 585
DpnII	GATC	2 cut(s)	472, 583
DriI	GACNNNNNGTC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	71, 210
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EarI	CTCTTC	2 cut(s)	71, 210
EciI	GGCGGA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	575
Eco81I	CCTNAGG	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	3 cut(s)	482, 553, 623
FaiI	YATR	7 cut(s)	249, 374, 480, 551, 621, 659, 669
FatI	CATG	3 cut(s)	478, 549, 619
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	3 cut(s)	293, 372, 568
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	257, 696
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	1 cut(s)	630
HapII	CCGG	2 cut(s)	15, 224
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	1 cut(s)	595
Hin1II	CATG	3 cut(s)	482, 553, 623
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HinfI	GANTC	5 cut(s)	88, 298, 460, 488, 562
HpaII	CCGG	2 cut(s)	15, 224
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	4 cut(s)	40, 67, 370, 640
Hpy188III	TCNNGA	8 cut(s)	73, 85, 101, 224, 257, 302, 550, 599
HpyCH4III	ACNGT	2 cut(s)	176, 406
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	5 cut(s)	238, 326, 619, 661, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	2 cut(s)	311, 412
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	3 cut(s)	482, 553, 623
HspAI	GCGC	1 cut(s)	593
Kpn2I	TCCGGA	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	472, 583
LmnI	GCTCC	4 cut(s)	186, 226, 512, 697
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	257, 696
MaeII	ACGT	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	474, 585
MboI	GATC	2 cut(s)	472, 583
MboII	GAAGA	8 cut(s)	88, 152, 227, 422, 466, 469, 538, 571
MflI	RGATCY	1 cut(s)	583
MluCI	AATT	4 cut(s)	42, 243, 318, 377
MlyI	GAGTC	1 cut(s)	497
MnlI	CCTC	6 cut(s)	194, 211, 306, 546, 566, 606
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	57, 537
MspI	CCGG	2 cut(s)	15, 224
MspR9I	CCNGG	2 cut(s)	16, 465
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	601
NciI	CCSGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	472, 583
NlaIII	CATG	3 cut(s)	482, 553, 623
NlaIV	GGNNCC	3 cut(s)	222, 514, 585
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	2 cut(s)	482, 623
PaeI	GCATGC	1 cut(s)	623
PagI	TCATGA	1 cut(s)	549
PaqCI	CACCTGC	1 cut(s)	317
PciI	ACATGT	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	4 cut(s)	88, 298, 460, 562
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PscI	ACATGT	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	3 cut(s)	222, 514, 585
PspPI	GGNCC	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	2 cut(s)	57, 537
RsaI	GTAC	2 cut(s)	173, 408
RsaNI	GTAC	2 cut(s)	172, 407
RseI	CAYNNNNRTG	1 cut(s)	554
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	472, 583
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	16, 465
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	2 cut(s)	266, 599
SmoI	CTYRAG	2 cut(s)	266, 599
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	4 cut(s)	42, 243, 318, 377
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	2 cut(s)	257, 696
StyD4I	CCNGG	2 cut(s)	14, 463
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	176, 406
TaiI	ACGT	1 cut(s)	173
TasI	AATT	4 cut(s)	42, 243, 318, 377
TfiI	GAWTC	4 cut(s)	88, 298, 460, 562
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	389, 539, 572, 656
TspGWI	ACGGA	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	2 cut(s)	482, 623
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	2 cut(s)	257, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.