Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

68494357 .. 68495404

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG492000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAATTAGCTCATCCGCCACCGATAACAACAGTACCCTTAGGAACTGGAAACAATCTTCCATTTGCATTTGGCTGGGGGAAGAAGAATCCTGGAACAGATCAACATGCTGTGGAGTCCTTTTTGCATCAAGTAAAGGGAGCCAAGGAAATGAAGATAGACAGCTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGGAGGCCAATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAATGAGCTGAACATGGTAACTATCCTCCATCTCTATCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

105

Amino Acids

11.65

Weight (kDa)

9.1

Isoelectric Point (pI)

17.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	1 cut(s)	256
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	4 cut(s)	11, 165, 232, 280
AluI	AGCT	4 cut(s)	11, 165, 232, 280
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	2 cut(s)	206, 219
AoxI	GGCC	2 cut(s)	202, 256
AspLEI	GCGC	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	40
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	168
BccI	CCATC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	93
BmiI	GGNNCC	3 cut(s)	142, 170, 213
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	13, 189
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	52
BseYI	CCCAGC	1 cut(s)	75
BshFI	GGCC	2 cut(s)	204, 258
BshNI	GGYRCC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	204, 258
Bsp143I	GATC	2 cut(s)	100, 211
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	204, 258
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	142, 170, 213
BspPI	GGATC	2 cut(s)	206, 219
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	100, 211
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	34, 314
BstC8I	GCNNGC	2 cut(s)	167, 249
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	2 cut(s)	13, 189
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	103, 214
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	2 cut(s)	100, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	2 cut(s)	110, 251
BstSCI	CCNGG	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	204, 258
BtsCI	GGATG	2 cut(s)	13, 189
Cac8I	GCNNGC	2 cut(s)	167, 249
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	4 cut(s)	107, 178, 248, 286
CviJI	RGCY	8 cut(s)	11, 75, 143, 165, 204, 232, 258, 280
CviKI_1	RGCY	8 cut(s)	11, 75, 143, 165, 204, 232, 258, 280
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	102, 213
DpnII	GATC	2 cut(s)	100, 211
EaeI	YGGCCR	1 cut(s)	256
EciI	GGCGGA	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	110, 181, 251, 289
FaiI	YATR	4 cut(s)	108, 179, 249, 287
FatI	CATG	4 cut(s)	106, 177, 247, 285
FokI	GGATG	1 cut(s)	196
GlaI	GCGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	204, 258
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	4 cut(s)	110, 181, 251, 289
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	3 cut(s)	88, 116, 190
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	178, 227
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	2 cut(s)	34, 314
HpyCH4V	TGCA	3 cut(s)	68, 127, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	4 cut(s)	110, 181, 251, 289
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	100, 211
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	5 cut(s)	33, 61, 78, 105, 151
LweI	GCATC	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	102, 213
MboI	GATC	2 cut(s)	100, 211
MboII	GAAGA	5 cut(s)	50, 94, 97, 166, 199
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	2 cut(s)	5, 206
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	174, 194, 234, 308
MseI	TTAA	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	2 cut(s)	100, 211
NlaIII	CATG	4 cut(s)	110, 181, 251, 289
NlaIV	GGNNCC	3 cut(s)	142, 170, 213
NspI	RCATGY	2 cut(s)	110, 251
PaeI	GCATGC	1 cut(s)	251
PagI	TCATGA	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	88, 190
PfoI	TCCNGGA	1 cut(s)	91
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	91
PspN4I	GGNNCC	3 cut(s)	142, 170, 213
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	165
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	316
Sau3AI	GATC	2 cut(s)	100, 211
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	5 cut(s)	13, 167, 174, 234, 282
SfaNI	GCATC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	2 cut(s)	5, 206
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	34, 314
TasI	AATT	2 cut(s)	5, 206
TfiI	GAWTC	2 cut(s)	88, 190
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	17, 167, 200
XceI	RCATGY	2 cut(s)	110, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.