Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

67574010 .. 67576072

Gene Structure 2063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCCAACTCCAGCTGTGGGTCTGATTTCTTGAAGAGTTTCAAGATTCCCAAGTATGTACTTGAATCTGAATCAAAGCGTGATGGGGAAGATTCTGATGAGCCCGAGTATCCAGTTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCAGCTTGGTGGCAATCTTCTTGTGACGTACCGTCAGCTCCTCAATGACTGGCAGGTTTTTGATGTGGGGGAAGAGGCTCCGAATAAGGTGCTGCGCCGAATTTATGTCAATCTAGAAAAGCTCAAGCACAAGGGGGATGGATTTGCTACCAAGATTCAAGAGAAACTGAGGATAATTCTCATCCGCCACCGAATAGCAACAGTACCCTTAGGAACTGGAAACAATCTTCCATTTGCATTTGGCTGGGGGAAGAAGAATCCTGGAACAGATCAACATGTTGTGGAGTCCTTTTTGCGTCAAGTAAAGGGAGCCAAGGAAATGAAGATAGACAGCTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGGAGGTCCATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAAGGAGCTGAACATGCAAGTTCATAATAGGAAGTTGCAATACAAAGCTCCTAGAACTGCTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

219

Amino Acids

24.59

Weight (kDa)

9.58

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	38 - 145	1.4e-10	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	483
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	2 cut(s)	521, 534
AcoI	YGGCCR	2 cut(s)	3, 571
AcsI	RAATTY	1 cut(s)	246
AfaI	GTAC	3 cut(s)	60, 176, 351
AfiI	CCNNNNNNNGG	2 cut(s)	18, 515
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	4 cut(s)	34, 43, 65, 305
AhdI	GACNNNNNGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	8 cut(s)	15, 151, 184, 268, 480, 547, 595, 635
AluI	AGCT	8 cut(s)	15, 151, 184, 268, 480, 547, 595, 635
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	2 cut(s)	521, 534
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	3, 571
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	243, 538
AspS9I	GGNCC	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	518
AxyI	CCTNAGG	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	77, 278
BceAI	ACGGC	1 cut(s)	558
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	583
BfaI	CTAG	2 cut(s)	260, 639
BfuAI	ACCTGC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	518
BmeRI	GACNNNNNGTC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	4 cut(s)	225, 457, 485, 528
BmrFI	CCNGG	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	254, 563
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 515
Bse1I	ACTGG	3 cut(s)	113, 200, 367
Bse21I	CCTNAGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	3 cut(s)	289, 327, 504
BseLI	CCNNNNNNNGG	2 cut(s)	18, 515
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	3 cut(s)	113, 200, 367
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	2 cut(s)	5, 573
BshNI	GGYRCC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	18, 515
BsmAI	GTCTC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	5, 573
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	415, 526
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	5, 573
BspCNI	CTCAG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	4 cut(s)	225, 457, 485, 528
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	521, 534
BspT107I	GGYRCC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	113, 200, 367
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	415, 526
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	179, 349
Bst6I	CTCTTC	2 cut(s)	29, 213
BstC8I	GCNNGC	2 cut(s)	482, 564
BstDEI	CTNAG	2 cut(s)	314, 355
BstF5I	GGATG	3 cut(s)	289, 327, 504
BstHHI	GCGC	2 cut(s)	243, 538
BstKTI	GATC	2 cut(s)	418, 529
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	2 cut(s)	415, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 601
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	3 cut(s)	425, 566, 604
BstSCI	CCNGG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	5, 573
BtsCI	GGATG	3 cut(s)	289, 327, 504
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	482, 564
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	2 cut(s)	243, 538
Cfr13I	GGNCC	1 cut(s)	518
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	59, 175, 350
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	4 cut(s)	422, 493, 563, 601
CviQI	GTAC	3 cut(s)	59, 175, 350
DdeI	CTNAG	2 cut(s)	314, 355
DpnI	GATC	2 cut(s)	417, 528
DpnII	GATC	2 cut(s)	415, 526
DriI	GACNNNNNGTC	1 cut(s)	177
EaeI	YGGCCR	2 cut(s)	3, 571
Eam1104I	CTCTTC	2 cut(s)	29, 213
Eam1105I	GACNNNNNGTC	1 cut(s)	177
EarI	CTCTTC	2 cut(s)	29, 213
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	518
Eco81I	CCTNAGG	1 cut(s)	355
Eco88I	CYCGRG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	4 cut(s)	425, 496, 566, 604
FaiI	YATR	7 cut(s)	57, 252, 423, 494, 564, 602, 612
FatI	CATG	4 cut(s)	421, 492, 562, 600
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	3 cut(s)	296, 314, 511
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	2 cut(s)	260, 639
GlaI	GCGC	2 cut(s)	242, 537
GluI	GCNGC	1 cut(s)	239
GsaI	CCCAGC	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	5, 573
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	2 cut(s)	243, 538
Hin1II	CATG	4 cut(s)	425, 496, 566, 604
Hin6I	GCGC	2 cut(s)	241, 536
HinP1I	GCGC	2 cut(s)	241, 536
HinfI	GANTC	8 cut(s)	46, 65, 71, 92, 301, 403, 431, 505
Hpy188I	TCNGA	5 cut(s)	25, 70, 97, 228, 583
Hpy188III	TCNNGA	6 cut(s)	31, 43, 260, 305, 493, 542
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	179, 349
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	383, 562, 604, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 601
HpyF3I	CTNAG	2 cut(s)	314, 355
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	425, 496, 566, 604
HspAI	GCGC	2 cut(s)	241, 536
Kzo9I	GATC	2 cut(s)	415, 526
LmnI	GCTCC	5 cut(s)	189, 229, 455, 592, 640
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	260, 639
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	2 cut(s)	417, 528
MboI	GATC	2 cut(s)	415, 526
MboII	GAAGA	9 cut(s)	46, 101, 155, 230, 365, 409, 412, 481, 514
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	246, 321
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	6 cut(s)	197, 214, 309, 489, 509, 549
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	15, 480
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	544, 601
NdeII	GATC	2 cut(s)	415, 526
NlaIII	CATG	4 cut(s)	425, 496, 566, 604
NlaIV	GGNNCC	4 cut(s)	225, 457, 485, 528
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	3 cut(s)	425, 566, 604
PaeI	GCATGC	1 cut(s)	566
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	7 cut(s)	46, 65, 71, 92, 301, 403, 505
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	4 cut(s)	225, 457, 485, 528
PspPI	GGNCC	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	2 cut(s)	15, 480
RsaI	GTAC	3 cut(s)	60, 176, 351
RsaNI	GTAC	3 cut(s)	59, 175, 350
RseI	CAYNNNNRTG	1 cut(s)	497
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	2 cut(s)	415, 526
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	269, 542
SmoI	CTYRAG	2 cut(s)	269, 542
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	2 cut(s)	246, 321
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	2 cut(s)	260, 639
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	179, 349
TaiI	ACGT	1 cut(s)	176
TasI	AATT	2 cut(s)	246, 321
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	7 cut(s)	46, 65, 71, 92, 301, 403, 505
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	482, 515, 599
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	3 cut(s)	425, 566, 604
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	2 cut(s)	260, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.