Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

14297549 .. 14304089

Gene Structure 6541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2994 bp

ATGGCGCCGAGTCTCAGGGACCTCCAGCTCACGCAGGTCTCGAAGTCCGGCCGCCGCGGCGGCGGTGAAGACCTCGAGGACGTGAGGCTTTTGGATTCGTATGAGAATTCGGAGGGAGTTGAAGAAGGGATGAGGACGGTTCAGGTCAGAGTTACCGGGATGACGTGCGCTGCTTGCTCTAATTCCGTTGAGGGAGCTCTTCAGAGCGTCAATGGCGTGCTCAGGGCCTCCGTGGCTTTGCTTCAGAATCGGGCTGACGTGGTTTTTGATCCCAGATTGGTCAAGGACGAAGACATCAAAAATGCAATTGAAGATGCTGGGTTTGAGGCAGAGGTTATACCTGAGCCCAGTGCAAACGGAGTAAAGCAGCATGGAAACCTGTCCGGTCAGTTTTCGATAGGAGGTATGACATGTGCAGCTTGCGTGAACTCTGTTGAAGGTATTCTGAAAGGGCTTCCTGGGGTCAAAAGAGCTGTTGTAGCTTTAGCTACTTCACTAGGGGAAGTGGAGTATGATCCTACTGTAATTAGTAAAGATGACATAGTCAATGCTATTGAAGATGCTGGTTTTGAAGCATCTTTTGTACAGAGTAGTGAGCAGGATAAAATTATACTGGGAGTTGCTGGCATATTCAGTGAGATAGATGCACAGGTTTTAGAAGCCATAATCAGCAACTTGAAAGGGGTGAGACATTTTCGTCTTGACAGGATTTCAAGAGAACTTGAAATCCTCTTTGATCCTGAAGTTGTCACTTCTAGATCCTTGGTTGATGGGATTGAGGGGGCTAGCAATGGGAAGTTCAAACTTCAAGTAGCAAACCCTTATACAAGAATGACTTGCAAAGATGTTGATGAAGCCTCAAATATGTTTCGGCTTTTCATTTCCAGCCTGGTTCTCAGTGTTCCTGTCTTTCTCATTCGAGTAGTCTGCCCTCACATTCCACTTCTGTATTCATTATTGCTCTGGAGATGTGGGCCTTTCGAAATGGGTGATTGGTTGAAGTGGGCATTGGTGAGTGTTGTTCAATTTGTGATTGGAAAGCGCTTCTACATTGCAGCTGCAAGAGCCCTACGAAATGGTTCAACTAACATGGATGTTCTGGTCGCCTTGGGAACTTCGGCCTCTTACTTCTACTCTGTTTGTGCACTTCTATATGGTGCAGTCACTGGGTTTTGGTCTCCTACATACTTTGAAACAAGTGCCATGCTAATAACATTTGTACTATTGGGGAAGTATCTGGAATGTCTTGCAAAAGGAAAGACATCAGATGCCATCAAAAAGTTGATAGAACTCACTCCAGCTACAGCTTTGTTGCTTGTTAAAGATAAAGGTGGGAGATGTGTTGGAGAGAGGGAAATTGATGCTTTGCTCATTCAGCCTGGAGATACATTAAAAGTTCTTCCTGGTACAAAAGTTCCTGCTGATGGTATGGTTGTGTGGGGTTCAAGTTATGTAAATGAGAGTATGGTAACTGGGGAAGCTATACCTGTTTCAAAAGAAGTCAACACGTTGGTGATTGGAGGAACAATAAATTTACATGGTGCCCTTCACGTACAAGTTACAAAAGTTGGATCTGATACAGTTTTACATCAAATAATTAATTTGGTCGAGACCGCTCAAATGTCCAAAGCTCCTATTCAGAAATTTGCTGATTTTGTTGCAAGCATTTTTGTTCCTACTGTAGTTGTATTGTCATTGTTGACATTTTTGGGTTGGTATGTTGCTGGAGCCTTTGGAGCTTACCCAGAACAGTGGCTCCCTGAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCCATATCAGTTGTGGTCATTGCATGCCCCTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTCGCAACAGGGGTTGGTGCTAATAATGGTGTGCTGATAAAAGGAGGAGATGCTCTGGAAAGAGCTCAAAAGGTTAAGTACGTGATATTTGATAAAACAGGCACCCTAACCCAAGGAAAGGCTACAGTTACTGCTGTAAAAGTTTTCACAGGAATGGATCGTGGAGATTTTCTTAAGTTGGTGGCATCTGCAGAGGCTAGCAGTGAACACCCACTAGGAAAAGCAATAGTTGAATATGCACGCCATTTCCACTTCTTTGATGAGCCTTCTGCAACCAATGATGCAACAAACCAAAGCAAGGAGCCCCTGATCTCTGGATGGCTTTTTGATGTCTCAGATTTCTCTGCTTTGCCAGGTAGAGGCATCCAGTGCTCAATAAATGGAAAACTTATTCTGGTTGGTAATAGGAAATTGATGACTGAAAGCGGAATTGACATTCCAACCCATGTTGAGGACTTTGTAGTAGAGCTGGAAGAAAGTGCAAAGACAGGCATACTTGTTGCATATGAAGGCAATTTAGTTGGTGTATTGGGGGTTGCAGACCCACTAAAAAGAGAAGCTGCAATAGTCATAGAGGGACTTGGTAAGATGGGTGTCATACCAGTCATGGTTACAGGAGATAATTGGAGGACAGCACAGGCTGTTGCAAAGGAGGTTGGCATTAAAGATGTGCGAGCGGAGGTAATGCCGGCTGGAAAAGCTGATGTTGTACGTTCATTCCAAAAAGATGGAAGCATAGTTGCAATGGTTGGTGATGGAATCAATGACTCTCCTGCCCTAGCTGCTTCTGATGTTGGTATGGCAATAGGGGCAGGGACAGATATTGCAATTGAAGCAGCTGACTATGTATTGATGAGAAATAACTTGGAAGATGTGATCACAGCCGTTGATCTCTCGAGAAAGACTTTCACTCGTATCCGATTGAATTATGTGTTTGCCATGGCCTACAATGTGATTGCAATACCTATTGCCGCAGGGGTTTTCTTTCCTTCACTGGGGATCATGTTGCCGCCATGGGTAGCCGGTGCATGCATGGCTATGTCATCTGTTAGTGTTGTATGCTCCTCTTTGCTCCTTAGGAGATACAGAAAACCCCGACTTACCACCATACTGGAAATAGTTGTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007610 GO:0007635 GO:0008150 GO:0009266 GO:0009605 GO:0009628 GO:0010646 GO:0023051 GO:0040011 GO:0042048 GO:0042221 GO:0042330 GO:0043052 GO:0048167 GO:0048168 GO:0048169 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0065007 GO:0065008 GO:0099177

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

997

Amino Acids

106.74

Weight (kDa)

5.26

Isoelectric Point (pI)

29.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	49 - 109	6e-13	Heavy-metal-associated domain
HMA	PF00403	131 - 191	2.2e-15	Heavy-metal-associated domain
E1-E2_ATPase	PF00122	432 - 537	2.4e-24	P-type ATPase actuator domain
Hydrolase	PF00702	646 - 884	1.6e-29	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	696
AbsI	CCTCGAGG	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	25
AccB1I	GGYRCC	3 cut(s)	4, 1541, 1964
AccBSI	CCGCTC	2 cut(s)	1616, 2540
AccII	CGCG	1 cut(s)	57
AclWI	GGATC	7 cut(s)	263, 509, 731, 753, 1579, 2028, 2870
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	3 cut(s)	106, 1531, 1643
AcuI	CTGAAG	3 cut(s)	185, 227, 762
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	6 cut(s)	585, 1221, 1408, 1554, 1943, 2574
AfeI	AGCGCT	1 cut(s)	1043
AfiI	CCNNNNNNNGG	7 cut(s)	1424, 1766, 1981, 2161, 2222, 2314, 2858
AflII	CTTAAG	1 cut(s)	2036
AflIII	ACRYGT	2 cut(s)	410, 1506
AjiI	CACGTC	3 cut(s)	82, 165, 259
AjnI	CCWGG	5 cut(s)	457, 888, 1378, 1402, 2215
AjuI	GAANNNNNNNTTGG	2 cut(s)	992, 1024
AleI	CACNNNNGTG	1 cut(s)	1511
AloI	GAACNNNNNNTCC	4 cut(s)	711, 743, 1740, 1772
Alw21I	GWGCWC	6 cut(s)	199, 222, 1147, 1834, 1930, 2237
Alw26I	GTCTC	6 cut(s)	17, 43, 682, 1182, 1604, 2200
Alw44I	GTGCAC	2 cut(s)	1143, 1830
AlwI	GGATC	7 cut(s)	263, 509, 731, 753, 1579, 2028, 2870
AlwNI	CAGNNNCTG	2 cut(s)	1166, 1994
Ama87I	CYCGRG	2 cut(s)	74, 2758
Aor51HI	AGCGCT	1 cut(s)	1043
AoxI	GGCC	5 cut(s)	49, 225, 974, 1119, 2805
ApaLI	GTGCAC	2 cut(s)	1143, 1830
ApeKI	GCWGC	8 cut(s)	170, 367, 416, 1055, 1058, 2423, 2645, 2699
ApoI	RAATTY	3 cut(s)	106, 1531, 1643
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AseI	ATTAAT	1 cut(s)	1599
Asp700I	GAANNNNTTC	2 cut(s)	441, 1078
AspLEI	GCGC	3 cut(s)	7, 170, 1044
AspS9I	GGNCC	3 cut(s)	19, 225, 974
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	6 cut(s)	77, 697, 1001, 1024, 1525, 2627
AsuII	TTCGAA	1 cut(s)	981
AsuNHI	GCTAGC	2 cut(s)	785, 2060
AvaI	CYCGRG	2 cut(s)	74, 2758
AvaII	GGWCC	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	2939
BaeGI	GKGCMC	3 cut(s)	1147, 1546, 1834
BaeI	ACNNNNGTAYC	2 cut(s)	1398, 1431
BanI	GGYRCC	3 cut(s)	4, 1541, 1964
BanII	GRGCYC	5 cut(s)	199, 348, 1069, 1930, 2169
BbsI	GAAGAC	2 cut(s)	75, 297
Bbv12I	GWGCWC	6 cut(s)	199, 222, 1147, 1834, 1930, 2237
BbvI	GCAGC	8 cut(s)	157, 379, 428, 1045, 1067, 2410, 2632, 2711
BccI	CCATC	7 cut(s)	764, 1280, 1418, 2175, 2446, 2585, 2612
BceAI	ACGGC	1 cut(s)	2732
BcgI	CGANNNNNNTGC	2 cut(s)	909, 943
BciT130I	CCWGG	5 cut(s)	459, 890, 1380, 1404, 2217
BciVI	GTATCC	1 cut(s)	2789
BclI	TGATCA	1 cut(s)	2739
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	6 cut(s)	17, 43, 682, 1182, 1604, 2200
BfaI	CTAG	6 cut(s)	497, 756, 786, 2061, 2078, 2642
BfmI	CTRYAG	4 cut(s)	1302, 1680, 1986, 2052
BfoI	RGCGCY	2 cut(s)	8, 1045
BfrI	CTTAAG	1 cut(s)	2036
BfuAI	ACCTGC	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	2789
BglI	GCCNNNNNGGC	3 cut(s)	57, 60, 233
Bme1390I	CCNGG	6 cut(s)	157, 459, 890, 1380, 1404, 2217
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	2 cut(s)	74, 2758
BmgBI	CACGTC	3 cut(s)	82, 165, 259
BmgT120I	GGNCC	3 cut(s)	19, 225, 974
BmiI	GGNNCC	7 cut(s)	6, 20, 1543, 1729, 1757, 1966, 2166
BmrFI	CCNGG	6 cut(s)	157, 459, 890, 1380, 1404, 2217
BmrI	ACTGGG	5 cut(s)	342, 623, 1176, 1482, 2867
BmtI	GCTAGC	2 cut(s)	789, 2064
BmuI	ACTGGG	5 cut(s)	342, 623, 1176, 1482, 2867
BpiI	GAAGAC	2 cut(s)	75, 297
BpmI	CTGGAG	5 cut(s)	8, 985, 1281, 1401, 1746
Bpu10I	CCTNAGC	2 cut(s)	221, 342
Bpu14I	TTCGAA	1 cut(s)	981
BpuMI	CCSGG	1 cut(s)	157
BsaAI	YACGTR	2 cut(s)	1552, 1945
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	3 cut(s)	43, 1182, 1604
BsaJI	CCNNGG	8 cut(s)	55, 231, 458, 762, 1107, 1975, 2802, 2876
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	1740, 1770
Bsc4I	CCNNNNNNNGG	7 cut(s)	1424, 1766, 1981, 2161, 2222, 2314, 2858
Bse118I	RCCGGY	2 cut(s)	2551, 2885
Bse1I	ACTGG	8 cut(s)	348, 618, 1171, 1477, 2230, 2465, 2862, 2979
Bse21I	CCTNAGG	1 cut(s)	2939
Bse3DI	GCAATG	4 cut(s)	796, 1050, 1815, 2613
BseBI	CCWGG	5 cut(s)	459, 890, 1380, 1404, 2217
BseDI	CCNNGG	8 cut(s)	55, 231, 458, 762, 1107, 1975, 2802, 2876
BseGI	GGATG	5 cut(s)	135, 165, 1099, 2186, 2226
BseLI	CCNNNNNNNGG	7 cut(s)	1424, 1766, 1981, 2161, 2222, 2314, 2858
BseMI	GCAATG	4 cut(s)	796, 1050, 1815, 2613
BseMII	CTCAG	5 cut(s)	28, 235, 333, 910, 2211
BseNI	ACTGG	8 cut(s)	348, 618, 1171, 1477, 2230, 2465, 2862, 2979
BseRI	GAGGAG	2 cut(s)	1923, 2917
BseSI	GKGCMC	3 cut(s)	1147, 1546, 1834
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	8 cut(s)	157, 379, 428, 1045, 1067, 2410, 2632, 2711
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	2 cut(s)	435, 1179
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	5 cut(s)	51, 227, 976, 1121, 2807
BshNI	GGYRCC	3 cut(s)	4, 1541, 1964
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	6 cut(s)	199, 222, 1147, 1834, 1930, 2237
BsiHKCI	CYCGRG	2 cut(s)	74, 2758
BsiSI	CCGG	5 cut(s)	48, 156, 384, 2552, 2886
BslFI	GGGAC	3 cut(s)	32, 2454, 2692
BslI	CCNNNNNNNGG	7 cut(s)	1424, 1766, 1981, 2161, 2222, 2314, 2858
BsmAI	GTCTC	6 cut(s)	17, 43, 682, 1182, 1604, 2200
BsmFI	GGGAC	3 cut(s)	32, 2454, 2692
BsnI	GGCC	5 cut(s)	51, 227, 976, 1121, 2807
Bso31I	GGTCTC	3 cut(s)	43, 1182, 1604
BsoBI	CYCGRG	2 cut(s)	74, 2758
Bsp119I	TTCGAA	1 cut(s)	981
Bsp1407I	TGTACA	1 cut(s)	583
Bsp19I	CCATGG	2 cut(s)	2802, 2876
BspANI	GGCC	5 cut(s)	51, 227, 976, 1121, 2807
BspCNI	CTCAG	5 cut(s)	27, 234, 334, 909, 2210
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	7 cut(s)	6, 20, 1543, 1729, 1757, 1966, 2166
BspMAI	CTGCAG	1 cut(s)	2056
BspMI	ACCTGC	1 cut(s)	25
BspOI	GCTAGC	2 cut(s)	789, 2064
BspPI	GGATC	7 cut(s)	263, 509, 731, 753, 1579, 2028, 2870
BspQI	GCTCTTC	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	981
BspT107I	GGYRCC	3 cut(s)	4, 1541, 1964
BspTI	CTTAAG	1 cut(s)	2036
BspTNI	GGTCTC	3 cut(s)	43, 1182, 1604
BsrBI	CCGCTC	2 cut(s)	1616, 2540
BsrDI	GCAATG	4 cut(s)	796, 1050, 1815, 2613
BsrFI	RCCGGY	2 cut(s)	2551, 2885
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	8 cut(s)	348, 618, 1171, 1477, 2230, 2465, 2862, 2979
BssAI	RCCGGY	2 cut(s)	2551, 2885
BssECI	CCNNGG	8 cut(s)	55, 231, 458, 762, 1107, 1975, 2802, 2876
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	5 cut(s)	762, 1107, 1975, 2802, 2876
Bst2UI	CCWGG	5 cut(s)	459, 890, 1380, 1404, 2217
Bst4CI	ACNGT	6 cut(s)	139, 523, 1582, 1681, 1752, 1990
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	2036
BstAPI	GCANNNNNTGC	1 cut(s)	2232
BstAUI	TGTACA	1 cut(s)	583
BstBAI	YACGTR	2 cut(s)	1552, 1945
BstBI	TTCGAA	1 cut(s)	981
BstDEI	CTNAG	6 cut(s)	14, 221, 342, 896, 2197, 2939
BstDSI	CCRYGG	4 cut(s)	55, 231, 2802, 2876
BstF5I	GGATG	5 cut(s)	135, 165, 1099, 2186, 2226
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	8, 1045
BstHHI	GCGC	3 cut(s)	7, 170, 1044
BstMAI	GTCTC	6 cut(s)	17, 43, 682, 1182, 1604, 2200
BstMCI	CGRYCG	1 cut(s)	52
BstNI	CCWGG	5 cut(s)	459, 890, 1380, 1404, 2217
BstNSI	RCATGY	3 cut(s)	414, 1824, 2895
BstSCI	CCNGG	6 cut(s)	155, 457, 888, 1378, 1402, 2215
BstSFI	CTRYAG	4 cut(s)	1302, 1680, 1986, 2052
BstSLI	GKGCMC	3 cut(s)	1147, 1546, 1834
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	8 cut(s)	157, 379, 428, 1045, 1067, 2410, 2632, 2711
BstV2I	GAAGAC	2 cut(s)	75, 297
BstX2I	RGATCY	2 cut(s)	758, 1571
BstXI	CCANNNNNNTGG	3 cut(s)	1752, 2591, 2974
BstYI	RGATCY	2 cut(s)	758, 1571
BstZI	CGGCCG	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	2939
BsuI	GTATCC	1 cut(s)	2789
BsuRI	GGCC	5 cut(s)	51, 227, 976, 1121, 2807
BtgI	CCRYGG	4 cut(s)	55, 231, 2802, 2876
BtrI	CACGTC	3 cut(s)	82, 165, 259
BtsCI	GGATG	5 cut(s)	135, 165, 1099, 2186, 2226
BtsI	GCAGTG	1 cut(s)	2071
BtsIMutI	CAGTG	8 cut(s)	355, 640, 904, 1164, 1757, 2071, 2237, 2855
BveI	ACCTGC	1 cut(s)	25
CaiI	CAGNNNCTG	2 cut(s)	1166, 1994
CfoI	GCGC	3 cut(s)	7, 170, 1044
Cfr10I	RCCGGY	2 cut(s)	2551, 2885
Cfr13I	GGNCC	3 cut(s)	19, 225, 974
Cfr42I	CCGCGG	1 cut(s)	58
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	6 cut(s)	584, 1220, 1407, 1553, 1942, 2573
CviQI	GTAC	6 cut(s)	584, 1220, 1407, 1553, 1942, 2573
DdeI	CTNAG	6 cut(s)	14, 221, 342, 896, 2197, 2939
DinI	GGCGCC	1 cut(s)	6
DrdI	GACNNNNNNGTC	1 cut(s)	696
DseDI	GACNNNNNNGTC	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	49
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	2 cut(s)	197, 1928
EclXI	CGGCCG	1 cut(s)	49
Eco130I	CCWWGG	5 cut(s)	762, 1107, 1975, 2802, 2876
Eco24I	GRGCYC	5 cut(s)	199, 348, 1069, 1930, 2169
Eco31I	GGTCTC	3 cut(s)	43, 1182, 1604
Eco47I	GGWCC	1 cut(s)	19
Eco47III	AGCGCT	1 cut(s)	1043
Eco52I	CGGCCG	1 cut(s)	49
Eco53kI	GAGCTC	2 cut(s)	197, 1928
Eco57I	CTGAAG	3 cut(s)	185, 227, 762
Eco81I	CCTNAGG	1 cut(s)	2939
Eco88I	CYCGRG	2 cut(s)	74, 2758
EcoICRI	GAGCTC	2 cut(s)	197, 1928
EcoO109I	RGGNCCY	2 cut(s)	19, 225
EcoRI	GAATTC	1 cut(s)	106
EcoRII	CCWGG	5 cut(s)	457, 888, 1378, 1402, 2215
EcoT14I	CCWWGG	5 cut(s)	762, 1107, 1975, 2802, 2876
EcoT22I	ATGCAT	1 cut(s)	2897
EcoT38I	GRGCYC	5 cut(s)	199, 348, 1069, 1930, 2169
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	5 cut(s)	762, 1107, 1975, 2802, 2876
FalI	AAGNNNNNCTT	2 cut(s)	820, 852
FaqI	GGGAC	3 cut(s)	32, 2454, 2692
FauNDI	CATATG	1 cut(s)	2368
FbaI	TGATCA	1 cut(s)	2739
FokI	GGATG	5 cut(s)	142, 172, 1106, 2193, 2213
FriOI	GRGCYC	5 cut(s)	199, 348, 1069, 1930, 2169
FspBI	CTAG	6 cut(s)	497, 756, 786, 2061, 2078, 2642
GlaI	GCGC	3 cut(s)	6, 169, 1043
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	5 cut(s)	8, 985, 1281, 1401, 1746
HaeII	RGCGCY	2 cut(s)	8, 1045
HaeIII	GGCC	5 cut(s)	51, 227, 976, 1121, 2807
HapII	CCGG	5 cut(s)	48, 156, 384, 2552, 2886
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	3 cut(s)	7, 170, 1044
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	3 cut(s)	5, 168, 1042
HinP1I	GCGC	3 cut(s)	5, 168, 1042
HincII	GTYRAC	2 cut(s)	1504, 1701
HindII	GTYRAC	2 cut(s)	1504, 1701
HinfI	GANTC	5 cut(s)	10, 95, 247, 2622, 2630
HpaII	CCGG	5 cut(s)	48, 156, 384, 2552, 2886
HphI	GGTGA	6 cut(s)	77, 697, 1001, 1024, 1525, 2627
Hpy166II	GTNNAC	6 cut(s)	427, 1145, 1504, 1701, 1832, 2069
Hpy8I	GTNNAC	6 cut(s)	427, 1145, 1504, 1701, 1832, 2069
HpyAV	CCTTC	6 cut(s)	119, 431, 1556, 2139, 2366, 2862
HpyCH4III	ACNGT	6 cut(s)	139, 523, 1582, 1681, 1752, 1990
HpyCH4IV	ACGT	7 cut(s)	81, 164, 258, 1508, 1551, 1944, 2575
HpyF3I	CTNAG	6 cut(s)	14, 221, 342, 896, 2197, 2939
HpySE526I	ACGT	7 cut(s)	81, 164, 258, 1508, 1551, 1944, 2575
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	3 cut(s)	5, 168, 1042
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	2551
KroNI	GCCGGC	1 cut(s)	2553
Ksp22I	TGATCA	1 cut(s)	2739
KspI	CCGCGG	1 cut(s)	58
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	8 cut(s)	194, 1636, 1727, 1736, 1761, 2164, 2930, 2940
Lsp1109I	GCAGC	8 cut(s)	157, 379, 428, 1045, 1067, 2410, 2632, 2711
MaeI	CTAG	6 cut(s)	497, 756, 786, 2061, 2078, 2642
MaeII	ACGT	7 cut(s)	81, 164, 258, 1508, 1551, 1944, 2575
MaeIII	GTNAC	7 cut(s)	151, 748, 1162, 1468, 1558, 1990, 2473
MbiI	CCGCTC	2 cut(s)	1616, 2540
MboII	GAAGA	9 cut(s)	80, 134, 191, 302, 323, 569, 1391, 2348, 2744
MfeI	CAATTG	2 cut(s)	306, 2691
MflI	RGATCY	2 cut(s)	758, 1571
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	19, 2624
MmeI	TCCRAC	3 cut(s)	1324, 1549, 2327
Mph1103I	ATGCAT	1 cut(s)	2897
MroNI	GCCGGC	1 cut(s)	2551
MroXI	GAANNNNTTC	2 cut(s)	441, 1078
MseI	TTAA	6 cut(s)	1320, 1391, 1599, 1938, 2037, 2526
MslI	CAYNNNNRTG	3 cut(s)	1511, 2015, 2900
MspA1I	CMGCKG	4 cut(s)	57, 1058, 1856, 2702
MspCI	CTTAAG	1 cut(s)	2036
MspI	CCGG	5 cut(s)	48, 156, 384, 2552, 2886
MspR9I	CCNGG	6 cut(s)	157, 459, 890, 1380, 1404, 2217
MunI	CAATTG	2 cut(s)	306, 2691
MvaI	CCWGG	5 cut(s)	459, 890, 1380, 1404, 2217
MvnI	CGCG	1 cut(s)	57
NaeI	GCCGGC	1 cut(s)	2553
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	2 cut(s)	2802, 2876
NdeI	CATATG	1 cut(s)	2368
NgoMIV	GCCGGC	1 cut(s)	2551
NheI	GCTAGC	2 cut(s)	785, 2060
NlaIV	GGNNCC	7 cut(s)	6, 20, 1543, 1729, 1757, 1966, 2166
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	748, 1162
NsiI	ATGCAT	1 cut(s)	2897
NspI	RCATGY	3 cut(s)	414, 1824, 2895
NspV	TTCGAA	1 cut(s)	981
OliI	CACNNNNGTG	1 cut(s)	1511
PaeI	GCATGC	2 cut(s)	1824, 2895
PaeR7I	CTCGAG	2 cut(s)	74, 2758
PciI	ACATGT	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PdiI	GCCGGC	1 cut(s)	2553
PdmI	GAANNNNTTC	2 cut(s)	441, 1078
PfeI	GAWTC	3 cut(s)	95, 247, 2622
PflFI	GACNNNGTC	1 cut(s)	542
PleI	GAGTC	2 cut(s)	18, 2624
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	18, 2624
Ppu21I	YACGTR	2 cut(s)	1552, 1945
PpuMI	RGGWCCY	1 cut(s)	19
PscI	ACATGT	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	1599
Psp124BI	GAGCTC	2 cut(s)	199, 1930
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	5 cut(s)	457, 888, 1378, 1402, 2215
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	5 cut(s)	457, 888, 1378, 1402, 2215
PspN4I	GGNNCC	7 cut(s)	6, 20, 1543, 1729, 1757, 1966, 2166
PspPI	GGNCC	3 cut(s)	19, 225, 974
PspPPI	RGGWCCY	1 cut(s)	19
PspXI	VCTCGAGB	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	2056
PstNI	CAGNNNCTG	2 cut(s)	1166, 1994
PsuI	RGATCY	2 cut(s)	758, 1571
PsyI	GACNNNGTC	1 cut(s)	542
PvuII	CAGCTG	3 cut(s)	1058, 1856, 2702
RsaI	GTAC	6 cut(s)	585, 1221, 1408, 1554, 1943, 2574
RsaNI	GTAC	6 cut(s)	584, 1220, 1407, 1553, 1942, 2573
RseI	CAYNNNNRTG	3 cut(s)	1511, 2015, 2900
SacI	GAGCTC	2 cut(s)	199, 1930
SacII	CCGCGG	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	6 cut(s)	1320, 1391, 1599, 1938, 2037, 2526
Sau96I	GGNCC	3 cut(s)	19, 225, 974
SchI	GAGTC	2 cut(s)	19, 2624
ScrFI	CCNGG	6 cut(s)	157, 459, 890, 1380, 1404, 2217
SfcI	CTRYAG	4 cut(s)	1302, 1680, 1986, 2052
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	2 cut(s)	74, 2758
Sfr303I	CCGCGG	1 cut(s)	58
SfuI	TTCGAA	1 cut(s)	981
SgrBI	CCGCGG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	2 cut(s)	74, 2758
SmiMI	CAYNNNNRTG	3 cut(s)	1511, 2015, 2900
SmlI	CTYRAG	3 cut(s)	74, 2036, 2758
SmoI	CTYRAG	3 cut(s)	74, 2036, 2758
SphI	GCATGC	2 cut(s)	1824, 2895
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	6 cut(s)	497, 756, 786, 2061, 2078, 2642
SstI	GAGCTC	2 cut(s)	199, 1930
StyD4I	CCNGG	6 cut(s)	155, 457, 888, 1378, 1402, 2215
StyI	CCWWGG	5 cut(s)	762, 1107, 1975, 2802, 2876
TaaI	ACNGT	6 cut(s)	139, 523, 1582, 1681, 1752, 1990
TaiI	ACGT	7 cut(s)	84, 167, 261, 1511, 1554, 1947, 2578
TaqI	TCGA	7 cut(s)	41, 75, 395, 919, 981, 1608, 2759
TatI	WGTACW	2 cut(s)	583, 1219
TauI	GCSGC	6 cut(s)	54, 57, 60, 63, 2837, 2875
TfiI	GAWTC	3 cut(s)	95, 247, 2622
Tru1I	TTAA	6 cut(s)	1320, 1391, 1599, 1938, 2037, 2526
Tru9I	TTAA	6 cut(s)	1320, 1391, 1599, 1938, 2037, 2526
TscAI	CASTG	8 cut(s)	355, 640, 904, 1171, 1757, 2071, 2237, 2862
TseFI	GTSAC	2 cut(s)	748, 1162
TseI	GCWGC	8 cut(s)	170, 367, 416, 1055, 1058, 2423, 2645, 2699
Tsp45I	GTSAC	2 cut(s)	748, 1162
TspDTI	ATGAA	5 cut(s)	867, 868, 942, 2385, 2568
TspGWI	ACGGA	3 cut(s)	175, 220, 372
TspRI	CASTG	8 cut(s)	355, 640, 904, 1171, 1757, 2071, 2237, 2862
Tth111I	GACNNNGTC	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	2036
VneI	GTGCAC	2 cut(s)	1143, 1830
VpaK11BI	GGWCC	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	1599
XapI	RAATTY	3 cut(s)	106, 1531, 1643
XbaI	TCTAGA	1 cut(s)	755
XceI	RCATGY	3 cut(s)	414, 1824, 2895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1807
XhoI	CTCGAG	2 cut(s)	74, 2758
XmnI	GAANNNNTTC	2 cut(s)	441, 1078
XspI	CTAG	6 cut(s)	497, 756, 786, 2061, 2078, 2642
Zsp2I	ATGCAT	1 cut(s)	2897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.