Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

14313002 .. 14314027

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0153800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTGCCTGGTTCTAAGGAGTGGGAGCAATACTACCAGAAAGGCTTCACTGCAACTCCCATGAATGGAGGAGGGATCATTTCATCAGATTCAACTGGTGTGACAACAAGTAGTATTGCTGTTGTGACTGATCAGAGCTTCATCAGTACCAGCCCCAATAATGGAGGTCAGCTAACTCCTACCGGAAGTGTAGCGAAACCAATCCGGCGGAGGTCTAGGGTTTCCAAGAAGACCCCCATCACTCTCCTTAACGCCAACGCCAACAACTTTCGAGCTTTGGTTCAACAATTCACAGGTTGTGCCGCTTCTAGCACGCCCATTTCGTTCGGTAACCAAAAGGGTCCGATCAATCTGAGTTTCGGAGTCAATAGTGCAGGTACTAGTTCTGTAGTTATGGCGCCTTTTGGAAATCCCAACTATAGTTACAACCAGCAGCAGCAGCAACAATTGCAGCGGCTAGCGCAAGCGCAGCAAGAACAGCAACAACAACGACACCCGCTACTGCAACTGCAAGAAAACCATGTCCAACTGCATCAAGAAGAGCAACAGCGTATGTACCCGTTTGATAATGTTAATGGTAGTGATCATGTGTTTCATTATTCGTCGAATTCGAGTAGTCCTGGTTATAATCCTATGCAAGCTGGTATGGAGATCGGGGATGGGTTTGAGGTCATGGATCAGGAAGATATATCTTTACATGAATTGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007610 GO:0007635 GO:0008150 GO:0009266 GO:0009605 GO:0009628 GO:0010646 GO:0023051 GO:0040011 GO:0042048 GO:0042221 GO:0042330 GO:0043052 GO:0048167 GO:0048168 GO:0048169 GO:0050789 GO:0050794 GO:0050804 GO:0050896 GO:0065007 GO:0065008 GO:0099177

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

237

Amino Acids

25.96

Weight (kDa)

5.84

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	81 - 102	2.5e-07	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	365
AccB1I	GGYRCC	2 cut(s)	4, 397
AciI	CCGC	4 cut(s)	208, 303, 454, 497
AclWI	GGATC	2 cut(s)	83, 684
AcsI	RAATTY	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	398
AfaI	GTAC	3 cut(s)	148, 379, 557
AfiI	CCNNNNNNNGG	2 cut(s)	65, 161
AgsI	TTSAA	2 cut(s)	93, 284
AhlI	ACTAGT	1 cut(s)	380
AjnI	CCWGG	2 cut(s)	7, 619
AluBI	AGCT	4 cut(s)	138, 172, 275, 641
AluI	AGCT	4 cut(s)	138, 172, 275, 641
AlwI	GGATC	2 cut(s)	83, 684
ApeKI	GCWGC	5 cut(s)	433, 436, 439, 451, 469
ApoI	RAATTY	1 cut(s)	607
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	3 cut(s)	400, 463, 469
AspS9I	GGNCC	1 cut(s)	341
AsuNHI	GCTAGC	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	341
BanI	GGYRCC	2 cut(s)	4, 397
BbsI	GAAGAC	1 cut(s)	236
BbvI	GCAGC	5 cut(s)	445, 448, 451, 463, 481
BccI	CCATC	2 cut(s)	245, 653
BciT130I	CCWGG	2 cut(s)	9, 621
BclI	TGATCA	2 cut(s)	130, 583
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	4 cut(s)	216, 309, 381, 458
BfmI	CTRYAG	2 cut(s)	387, 418
BfoI	RGCGCY	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	7 cut(s)	303, 434, 437, 440, 452, 455, 470
BlsI	GCNGC	7 cut(s)	304, 435, 438, 441, 453, 456, 471
Bme1390I	CCNGG	2 cut(s)	9, 621
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	3 cut(s)	6, 342, 399
BmrFI	CCNGG	2 cut(s)	9, 621
BmsI	GCATC	1 cut(s)	541
BmtI	GCTAGC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	236
BsaHI	GRCGYC	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 161
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	9, 621
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	2 cut(s)	65, 161
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	5 cut(s)	445, 448, 451, 463, 481
BsgI	GTGCAG	1 cut(s)	393
BshNI	GGYRCC	2 cut(s)	4, 397
BsiSI	CCGG	2 cut(s)	183, 205
BslI	CCNNNNNNNGG	2 cut(s)	65, 161
Bsp143I	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
BspACI	CCGC	4 cut(s)	208, 303, 454, 497
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	6, 342, 399
BspMI	ACCTGC	1 cut(s)	365
BspOI	GCTAGC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	83, 684
BspQI	GCTCTTC	1 cut(s)	534
BspT107I	GGYRCC	2 cut(s)	4, 397
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
BssNI	GRCGYC	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	9, 621
Bst6I	CTCTTC	1 cut(s)	534
BstACI	GRCGYC	1 cut(s)	398
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	4 cut(s)	314, 459, 465, 639
BstDEI	CTNAG	2 cut(s)	15, 353
BstEII	GGTNACC	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	401
BstHHI	GCGC	3 cut(s)	400, 463, 469
BstKTI	GATC	6 cut(s)	78, 133, 348, 586, 654, 679
BstMBI	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
BstMWI	GCNNNNNNNGC	5 cut(s)	439, 448, 460, 469, 478
BstNI	CCWGG	2 cut(s)	9, 621
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	7, 619
BstSFI	CTRYAG	2 cut(s)	387, 418
BstV1I	GCAGC	5 cut(s)	445, 448, 451, 463, 481
BstV2I	GAAGAC	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	4 cut(s)	314, 459, 465, 639
CfoI	GCGC	3 cut(s)	400, 463, 469
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	3 cut(s)	147, 378, 556
CviAII	CATG	5 cut(s)	61, 521, 587, 673, 698
CviJI	RGCY	7 cut(s)	45, 138, 153, 172, 275, 457, 641
CviKI_1	RGCY	7 cut(s)	45, 138, 153, 172, 275, 457, 641
CviQI	GTAC	3 cut(s)	147, 378, 556
DdeI	CTNAG	2 cut(s)	15, 353
DinI	GGCGCC	1 cut(s)	399
DpnI	GATC	6 cut(s)	77, 132, 347, 585, 653, 678
DpnII	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	2 cut(s)	7, 619
EgeI	GGCGCC	1 cut(s)	399
EheI	GGCGCC	1 cut(s)	399
FaeI	CATG	5 cut(s)	64, 524, 590, 676, 701
FatI	CATG	5 cut(s)	60, 520, 586, 672, 697
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	2 cut(s)	130, 583
Fnu4HI	GCNGC	7 cut(s)	303, 434, 437, 440, 452, 455, 470
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	7 cut(s)	303, 434, 437, 440, 452, 455, 470
FspBI	CTAG	4 cut(s)	216, 309, 381, 458
GlaI	GCGC	3 cut(s)	399, 462, 468
GluI	GCNGC	7 cut(s)	303, 434, 437, 440, 452, 455, 470
HaeII	RGCGCY	1 cut(s)	401
HapII	CCGG	2 cut(s)	183, 205
HhaI	GCGC	3 cut(s)	400, 463, 469
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	5 cut(s)	64, 524, 590, 676, 701
Hin6I	GCGC	3 cut(s)	398, 461, 467
HinP1I	GCGC	3 cut(s)	398, 461, 467
HinfI	GANTC	2 cut(s)	89, 363
HpaII	CCGG	2 cut(s)	183, 205
Hpy188I	TCNGA	5 cut(s)	88, 135, 345, 354, 362
Hpy188III	TCNNGA	2 cut(s)	536, 680
Hpy99I	CGWCG	1 cut(s)	607
HpyCH4V	TGCA	7 cut(s)	53, 374, 451, 505, 511, 532, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	439, 448, 460, 469, 478
HpyF3I	CTNAG	2 cut(s)	15, 353
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	5 cut(s)	64, 524, 590, 676, 701
HspAI	GCGC	3 cut(s)	398, 461, 467
KasI	GGCGCC	1 cut(s)	397
Ksp22I	TGATCA	2 cut(s)	130, 583
Kzo9I	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	5 cut(s)	445, 448, 451, 463, 481
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	4 cut(s)	216, 309, 381, 458
MaeIII	GTNAC	4 cut(s)	100, 124, 329, 422
MalI	GATC	6 cut(s)	77, 132, 347, 585, 653, 678
MboI	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
MboII	GAAGA	3 cut(s)	241, 551, 695
MfeI	CAATTG	1 cut(s)	446
MluCI	AATT	4 cut(s)	287, 446, 607, 701
Mly113I	GGCGCC	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	5 cut(s)	62, 65, 158, 204, 661
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	3 cut(s)	249, 573, 712
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	2 cut(s)	183, 205
MspR9I	CCNGG	2 cut(s)	9, 621
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	2 cut(s)	9, 621
MwoI	GCNNNNNNNGC	5 cut(s)	439, 448, 460, 469, 478
NarI	GGCGCC	1 cut(s)	398
NdeII	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	5 cut(s)	64, 524, 590, 676, 701
NlaIV	GGNNCC	3 cut(s)	6, 342, 399
NmuCI	GTSAC	2 cut(s)	100, 124
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 608
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	7 cut(s)	304, 435, 438, 441, 453, 456, 471
PleI	GAGTC	1 cut(s)	371
PluTI	GGCGCC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	7, 619
PspEI	GGTNACC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	7, 619
PspN4I	GGNNCC	3 cut(s)	6, 342, 399
PspPI	GGNCC	1 cut(s)	341
RsaI	GTAC	3 cut(s)	148, 379, 557
RsaNI	GTAC	3 cut(s)	147, 378, 556
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	249, 573, 712
SatI	GCNGC	7 cut(s)	303, 434, 437, 440, 452, 455, 470
Sau3AI	GATC	6 cut(s)	75, 130, 345, 583, 651, 676
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	2 cut(s)	9, 621
SetI	ASST	9 cut(s)	140, 169, 174, 215, 277, 298, 379, 643, 672
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	387, 418
SfoI	GGCGCC	1 cut(s)	399
SinI	GGWCC	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	4 cut(s)	287, 446, 607, 701
SsiI	CCGC	4 cut(s)	208, 303, 454, 497
SspDI	GGCGCC	1 cut(s)	397
SspMI	CTAG	4 cut(s)	216, 309, 381, 458
StyD4I	CCNGG	2 cut(s)	7, 619
TaqI	TCGA	3 cut(s)	271, 605, 611
TasI	AATT	4 cut(s)	287, 446, 607, 701
TauI	GCSGC	2 cut(s)	305, 457
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	249, 573, 712
Tru9I	TTAA	3 cut(s)	249, 573, 712
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	100, 124
TseI	GCWGC	5 cut(s)	433, 436, 439, 451, 469
Tsp45I	GTSAC	2 cut(s)	100, 124
TspDTI	ATGAA	5 cut(s)	72, 77, 130, 584, 714
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	4 cut(s)	216, 309, 381, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.