Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Reverse (-)

3345007 .. 3349800

Gene Structure 4794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCCAACTCCAGCTGTGGGTCTGATTTCTTGAAGAGTTTCAAGATTCCCAAGTATGTACTTGAATCCGAATCAAAGCGTGATGGGGAAGATTCTGATGAGCCCGAGTGTCTAGTTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCAGCTTGGTGGCAATCTTCTTGTGACGTACCGTCAGCTCCTCAATGACTGGCAGGTTTTTGATGTGGGGGAAGAGGCTCCGGATAAGGTGCTGCGCCGAATTTATGTCAATCTAGAAACGCTCAAGCACAAGGGGGATGGATTTGCTAGCAAGATTCAAGAGAAACTGAGGATAATTGTTGCAGGTGGTGATGGAACTGCTGGCTGGCTTCTTGGAGTTGTTTCTGATCTGAAATTAGCTCATCCGCCATCGATAGCAACAGTACCCTTAGGAACTGGAAACAATCTTCCATTTGCATTTGGCTGGGGGAAGAAGAATCTTAGAACAGATCAACATGTTGTGGAGTCCTTTTTGCATCAAGTAAAGGGAGCCAAGGAAATGAAGATAGACAGCTGGCACCTTCTCATGAGGATGAAGATTCCAAAAAGAGGTCCATTGGATCCCATTGCGCCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCATTGTCTCTGACACAAATGAGTTGAACATGCAAGTTCATAATAGGAAGTTGCGATACAAAGCTCCTAGAACTGCTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

239

Amino Acids

26.39

Weight (kDa)

8.97

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAGK_cat	PF00781	39 - 161	4.2e-19	Diacylglycerol kinase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	190, 320
AccB1I	GGYRCC	1 cut(s)	543
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	581, 594
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	246
AfaI	GTAC	3 cut(s)	60, 176, 411
AfiI	CCNNNNNNNGG	2 cut(s)	18, 575
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	5 cut(s)	34, 43, 65, 305, 658
AhdI	GACNNNNNGTC	1 cut(s)	177
AluBI	AGCT	7 cut(s)	15, 151, 184, 386, 540, 607, 695
AluI	AGCT	7 cut(s)	15, 151, 184, 386, 540, 607, 695
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	581, 594
Ama87I	CYCGRG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	243, 598
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	347
AsuNHI	GCTAGC	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	4 cut(s)	77, 278, 332, 403
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	4 cut(s)	113, 260, 294, 699
BfuAI	ACCTGC	2 cut(s)	190, 320
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	578
BmeRI	GACNNNNNGTC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	4 cut(s)	225, 517, 545, 588
BmsI	GCATC	1 cut(s)	511
BmtI	GCTAGC	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	254, 623
Bsa29I	ATCGAT	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 575
Bse1I	ACTGG	2 cut(s)	200, 427
Bse21I	CCTNAGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	226
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	3 cut(s)	289, 388, 564
BseLI	CCNNNNNNNGG	2 cut(s)	18, 575
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	200, 427
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	450
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	543
BshVI	ATCGAT	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	18, 575
BsmAI	GTCTC	1 cut(s)	643
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	3 cut(s)	373, 475, 586
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	4 cut(s)	225, 517, 545, 588
BspMI	ACCTGC	2 cut(s)	190, 320
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	2 cut(s)	581, 594
BspT107I	GGYRCC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	200, 427
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	3 cut(s)	373, 475, 586
BssT1I	CCWWGG	1 cut(s)	519
Bst4CI	ACNGT	2 cut(s)	179, 409
Bst6I	CTCTTC	2 cut(s)	29, 213
BstC8I	GCNNGC	5 cut(s)	295, 349, 353, 542, 624
BstDEI	CTNAG	3 cut(s)	314, 415, 467
BstF5I	GGATG	3 cut(s)	289, 388, 564
BstHHI	GCGC	2 cut(s)	243, 598
BstKTI	GATC	3 cut(s)	376, 478, 589
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	3 cut(s)	373, 475, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNSI	RCATGY	3 cut(s)	485, 626, 664
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
Bsu15I	ATCGAT	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	289, 388, 564
BveI	ACCTGC	2 cut(s)	190, 320
Cac8I	GCNNGC	5 cut(s)	295, 349, 353, 542, 624
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	2 cut(s)	243, 598
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	59, 175, 410
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	4 cut(s)	482, 553, 623, 661
CviQI	GTAC	3 cut(s)	59, 175, 410
DdeI	CTNAG	3 cut(s)	314, 415, 467
DpnI	GATC	3 cut(s)	375, 477, 588
DpnII	GATC	3 cut(s)	373, 475, 586
DriI	GACNNNNNGTC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	29, 213
Eam1105I	GACNNNNNGTC	1 cut(s)	177
EarI	CTCTTC	2 cut(s)	29, 213
EciI	GGCGGA	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	578
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	4 cut(s)	485, 556, 626, 664
FaiI	YATR	7 cut(s)	57, 252, 483, 554, 624, 662, 672
FatI	CATG	4 cut(s)	481, 552, 622, 660
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	3 cut(s)	296, 375, 571
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	4 cut(s)	113, 260, 294, 699
GlaI	GCGC	2 cut(s)	242, 597
GluI	GCNGC	1 cut(s)	239
GsaI	CCCAGC	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	2 cut(s)	243, 598
Hin1II	CATG	4 cut(s)	485, 556, 626, 664
Hin6I	GCGC	2 cut(s)	241, 596
HinP1I	GCGC	2 cut(s)	241, 596
HinfI	GANTC	8 cut(s)	46, 65, 71, 92, 301, 463, 491, 565
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	6 cut(s)	25, 70, 97, 373, 378, 643
Hpy188III	TCNNGA	7 cut(s)	31, 43, 227, 260, 305, 553, 602
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	2 cut(s)	179, 409
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	329, 443, 502, 622, 664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	3 cut(s)	314, 415, 467
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	4 cut(s)	485, 556, 626, 664
HspAI	GCGC	2 cut(s)	241, 596
Kpn2I	TCCGGA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	373, 475, 586
LmnI	GCTCC	4 cut(s)	189, 229, 515, 700
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	4 cut(s)	113, 260, 294, 699
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	375, 477, 588
MboI	GATC	3 cut(s)	373, 475, 586
MboII	GAAGA	9 cut(s)	46, 101, 155, 230, 425, 469, 472, 541, 574
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	246, 321, 380
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	6 cut(s)	197, 214, 309, 549, 569, 609
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	226
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	15, 540
MspI	CCGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	604
NdeII	GATC	3 cut(s)	373, 475, 586
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	4 cut(s)	485, 556, 626, 664
NlaIV	GGNNCC	4 cut(s)	225, 517, 545, 588
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	3 cut(s)	485, 626, 664
PaeI	GCATGC	1 cut(s)	626
PagI	TCATGA	1 cut(s)	552
PaqCI	CACCTGC	1 cut(s)	320
PciI	ACATGT	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	7 cut(s)	46, 65, 71, 92, 301, 463, 565
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PscI	ACATGT	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	450
PspN4I	GGNNCC	4 cut(s)	225, 517, 545, 588
PspPI	GGNCC	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	2 cut(s)	15, 540
RsaI	GTAC	3 cut(s)	60, 176, 411
RsaNI	GTAC	3 cut(s)	59, 175, 410
RseI	CAYNNNNRTG	1 cut(s)	557
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	373, 475, 586
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	269, 602
SmoI	CTYRAG	2 cut(s)	269, 602
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	3 cut(s)	246, 321, 380
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	4 cut(s)	113, 260, 294, 699
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	179, 409
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	398
TasI	AATT	3 cut(s)	246, 321, 380
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	7 cut(s)	46, 65, 71, 92, 301, 463, 565
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	542, 575, 659
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	3 cut(s)	485, 626, 664
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	4 cut(s)	113, 260, 294, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.