Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001034

Physical Location & Seq

Genomic Coordinates Forward (+)

61850181 .. 61850716

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0489100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAAGAAACCCGCAGAGCTCGTGTTCATCCCCTTAGCAGGAGCCGGCCACCTCGTACCGACGGTCGAGATCGCCAAGCTCCTCATATCTCGAGACGACCACCTCTTCATCACCGTCCTCATCATGAAGGCTCCCTTCGGCTCCACAGCCACCGACACCTATATAGACTCCATCGCCTCCGCCTCAGAAAAACGCATCAAGCTCATCAACCTCCCACAACCTGACGTCGACTTCATAAACATGCCCCGCAGCACCTTCAGCAAAACGTTAGTCGAAAGCCACAAACCCTACGTCAGAGATGCCGTTGCCAAACTTGCCGAGTCAACCGAGTCGACCCCGAGGCTCGCCGGGTTCGTCATCGACATGGTTTGCCCCACTATGATAGATGTGGCCAACGAGTTCGGGGTTCCAACGTACATCTTCTTCACCTCCAACGCTTGCTTTCTAGGGCTCATGTTCCACCTCCAGACGCTCGCCGACGAGCATGACGTGGACGTCACTGAGTTAAAGGACTCGGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006629 GO:0006793 GO:0006796 GO:0006950 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0030168 GO:0030258 GO:0030425 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036477 GO:0042060 GO:0042995 GO:0043005 GO:0043197 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044255 GO:0044309 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045202 GO:0046834 GO:0050817 GO:0050878 GO:0050896 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071944 GO:0097447 GO:0097458 GO:0098794 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

174

Amino Acids

19.16

Weight (kDa)

5.01

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20900 AT2G20900 AT2G20900 AT2G20900
fragaria_vesca	FvH4_3g21140 FvH4_3g21140 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410 FvH4_6g44410
malus_domestica	MD09G1097300.v1.1 MD11G1235100.v1.1 MD17G1085600.v1.1 MD17G1085700.v1.1
prunus_persica	Prupe.3G228600_v2.0.a1 Prupe.3G228600_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1 Prupe.4G191900_v2.0.a1
pyrus_communis	pycom09g02160 pycom11g20670 pycom17g08330
rosa_chinensis	RchiOBHm_Chr2g0161401 RchiOBHm_Chr5g0036201
rosa_laevigata	RLG00000008429 RLG00000020681 RLG00000021281 RLG00000022547 RLG00000033679
rosa_multiflora	Rmu_co8358135.1_g000001 Rmu_sc0000247.1_g000005 Rmu_sc0003548.1_g000003 Rmu_sc0040460.1_g000002
rosa_roxburghii	Rroxscaffold_1G00044560 Rroxscaffold_2G00088870
rosa_rugosa	Rorug02G0489000 Rorug02G0489100 Rorug05G0153500 Rorug05G0153600.1 Rorug05G0153700 Rorug05G0153800 Rorug05G0154100
rosa_samantha	Rh2AG555300 Rh2BG568500 Rh2CG539200 Rh2DG578100 Rh3CG359800 Rh3DG363000 Rh5AG247800 Rh5BG248400 Rh5CG279700 Rh5CG492000 Rh5DG256700 Rh6CG191300
rosa_wichuraiana	Rw0G008460 Rw2G045940 Rw3G028650 Rw5G022720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	494
AatII	GACGTC	2 cut(s)	228, 498
AccI	GTMKAC	2 cut(s)	228, 332
AciI	CCGC	3 cut(s)	12, 180, 247
AclI	AACGTT	1 cut(s)	266
AcoI	YGGCCR	2 cut(s)	46, 390
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	2 cut(s)	225, 495
AfaI	GTAC	2 cut(s)	57, 416
AfiI	CCNNNNNNNGG	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	490
AluBI	AGCT	3 cut(s)	19, 79, 202
AluI	AGCT	3 cut(s)	19, 79, 202
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	87
Ama87I	CYCGRG	2 cut(s)	90, 337
AoxI	GGCC	3 cut(s)	46, 390, 519
ApeKI	GCWGC	1 cut(s)	249
ArsI	GACNNNNNNTTYG	4 cut(s)	255, 276, 287, 308
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	103, 418
AvaI	CYCGRG	2 cut(s)	90, 337
BalI	TGGCCA	1 cut(s)	392
BanII	GRGCYC	2 cut(s)	21, 453
BarI	GAAGNNNNNNTAC	2 cut(s)	407, 439
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	2 cut(s)	446, 523
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	349
BmeT110I	CYCGRG	2 cut(s)	90, 337
BmgBI	CACGTC	1 cut(s)	490
BmiI	GGNNCC	4 cut(s)	43, 132, 142, 408
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	204, 289
BpmI	CTGGAG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	2 cut(s)	225, 495
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	198, 492
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	48, 392, 521
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	90, 337
BsiSI	CCGG	2 cut(s)	45, 348
BslI	CCNNNNNNNGG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	87
BsmBI	CGTCTC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	48, 392, 521
BsoBI	CYCGRG	2 cut(s)	90, 337
Bsp1286I	GDGCHC	2 cut(s)	21, 453
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	12, 180, 247
BspANI	GGCC	3 cut(s)	48, 392, 521
BspCNI	CTCAG	2 cut(s)	197, 493
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	43, 132, 142, 408
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	2 cut(s)	225, 495
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	64, 115
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	2 cut(s)	225, 495
BstC8I	GCNNGC	4 cut(s)	46, 345, 439, 474
BstDEI	CTNAG	3 cut(s)	34, 184, 501
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	69
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 314
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	48, 392, 521
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	4 cut(s)	46, 345, 439, 474
CciI	TCATGA	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	44
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	56, 415
CviAII	CATG	5 cut(s)	124, 241, 364, 454, 485
CviQI	GTAC	2 cut(s)	56, 415
DdeI	CTNAG	3 cut(s)	34, 184, 501
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
EaeI	YGGCCR	2 cut(s)	46, 390
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	521
Eco24I	GRGCYC	2 cut(s)	21, 453
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	241
Eco88I	CYCGRG	2 cut(s)	90, 337
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	2 cut(s)	21, 453
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	5 cut(s)	127, 244, 367, 457, 488
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	5 cut(s)	123, 240, 363, 453, 484
FauI	CCCGC	2 cut(s)	19, 254
FblI	GTMKAC	2 cut(s)	228, 332
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	21, 453
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	2 cut(s)	446, 523
GluI	GCNGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	48, 392, 521
HapII	CCGG	2 cut(s)	45, 348
HgaI	GACGC	1 cut(s)	478
Hin1I	GRCGYC	2 cut(s)	225, 495
Hin1II	CATG	5 cut(s)	127, 244, 367, 457, 488
HincII	GTYRAC	3 cut(s)	229, 324, 333
HindII	GTYRAC	3 cut(s)	229, 324, 333
HinfI	GANTC	4 cut(s)	167, 320, 329, 512
HpaII	CCGG	2 cut(s)	45, 348
HphI	GGTGA	2 cut(s)	103, 418
Hpy166II	GTNNAC	4 cut(s)	229, 324, 333, 493
Hpy188I	TCNGA	3 cut(s)	187, 296, 517
Hpy188III	TCNNGA	5 cut(s)	67, 90, 92, 124, 466
Hpy8I	GTNNAC	4 cut(s)	229, 324, 333, 493
Hpy99I	CGWCG	3 cut(s)	64, 230, 482
HpyAV	CCTTC	3 cut(s)	121, 145, 265
HpyCH4III	ACNGT	2 cut(s)	64, 115
HpyCH4IV	ACGT	6 cut(s)	225, 266, 291, 413, 489, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 314
HpyF3I	CTNAG	3 cut(s)	34, 184, 501
HpySE526I	ACGT	6 cut(s)	225, 266, 291, 413, 489, 495
Hsp92I	GRCGYC	2 cut(s)	225, 495
Hsp92II	CATG	5 cut(s)	127, 244, 367, 457, 488
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	4 cut(s)	41, 84, 136, 146
LpnPI	CCDG	5 cut(s)	24, 58, 234, 361, 479
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	2 cut(s)	204, 289
MaeI	CTAG	2 cut(s)	446, 523
MaeII	ACGT	6 cut(s)	225, 266, 291, 413, 489, 495
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	4 cut(s)	16, 97, 412, 415
MhlI	GDGCHC	2 cut(s)	21, 453
MlsI	TGGCCA	1 cut(s)	392
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	4 cut(s)	161, 329, 338, 506
MmeI	TCCRAC	2 cut(s)	434, 456
Mox20I	TGGCCA	1 cut(s)	392
MroNI	GCCGGC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	2 cut(s)	239, 362
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	2 cut(s)	45, 348
MspR9I	CCNGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	258, 314
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	69
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	5 cut(s)	127, 244, 367, 457, 488
NlaIV	GGNNCC	4 cut(s)	43, 132, 142, 408
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 486
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	4 cut(s)	161, 328, 337, 506
PpsI	GAGTC	4 cut(s)	161, 328, 337, 506
Psp124BI	GAGCTC	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	266
PspN4I	GGNNCC	4 cut(s)	43, 132, 142, 408
RsaI	GTAC	2 cut(s)	57, 416
RsaNI	GTAC	2 cut(s)	56, 415
RseI	CAYNNNNRTG	2 cut(s)	239, 362
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	2 cut(s)	227, 331
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	1 cut(s)	69
SchI	GAGTC	4 cut(s)	161, 329, 338, 506
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	2 cut(s)	21, 453
SfaNI	GCATC	2 cut(s)	204, 289
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	239, 362
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	3 cut(s)	12, 180, 247
SspMI	CTAG	2 cut(s)	446, 523
SstI	GAGCTC	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	521
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	64, 115
TaiI	ACGT	6 cut(s)	228, 269, 294, 416, 492, 498
TaqI	TCGA	6 cut(s)	66, 91, 228, 273, 332, 360
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	5 cut(s)	16, 17, 97, 140, 223
TspRI	CASTG	1 cut(s)	505
XceI	RCATGY	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	90
XmiI	GTMKAC	2 cut(s)	228, 332
XspI	CTAG	2 cut(s)	446, 523
ZraI	GACGTC	2 cut(s)	226, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.