Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002306

Physical Location & Seq

Genomic Coordinates Reverse (-)

22293281 .. 22296014

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCCTCACCACTCCACAACCCCATTTCAAAACCTTCTCTCTCTCCCTCTTTCTCTCCCCCCCCCCCCCCCCCCCCCTCCCCCCTTTCACTGATAGCCATGAAAAAGCTCACTCTCACTCATACGCTTCCTCTTCCTCTTCTCCTTCTTCTCCTTCTTTTTGTCCCCATCTCGGCTTCCGTGGAATGTGAATGCAATTTGGAAACCCTAGACCATGACAAGTTCAAAGTCCTCAAGTTCAAGCTAGTTGCGATAAGTTCAATCCTCATGGCAAGTTTCCTTGGTGTCTCCCTTCCAATGTTGGGCAAGAAAATTCCGGCTCTAAACACCGAAAACGACATCTTCTTCCTGATCAAGGCTTTTGCGGCCGGTGTGATTCTAGCAACAGGGTTCATCCATGTGCTACCGGATGCTTTTGAGAGCTTGAGAAGCCCTTGCCTTAGCGAAACCCTGTGGGACAGCTTCCCGTTTACCGGCTTCATTGCCATGCTTTCGGCGATTGGGACGATGATGATCGACACCTTTGCCACCAGCTACTATAGAAGATCACATTTCACCAAAGCACTGCCAGTGAAGGAGGATGAAGAGATGAATGGGGTGCACCAGGGTCATGTGCATGTTCACGCACATGCCACACACGGCCATGCTCACGGTTCTGGCGCGATTGCACCGGAGGATTCGATTTCTTCTTTCGAAATTGTTAGGCATCGAGTGATATCACAGGTTCTGGAGCTGGGAATTTTGGTTCATTCAGTAATTATTGGGATATCTTTAGGTGCCTCACAGAGTCCCAAGACAATCAAACCTCTTGTAGCAGCTCTTACTTTCCATCAATTTTTCGAAGGCATGGGCCTTGGTGGGTGCATAACTCAGGCCAACTTTAAGTCCAGGGCCATTGCAACAATGGTGCTTTTCTTCTCCCTCACAACCCCAATTGGAATTGGTGTTGGAATGGGAATATCAAACATTTACAACGAGACCAGCCCAAGTGCTCTAATCGTGGAAGGAGTTTTCAACTCTGCATCAGCTGGGATCCTAATATACATGGCTCTGGTTGACCTACTAGCAGCAGATTTCATGAACCCTAGAATGCAAAGCAATCTAAGGATCCAGCTTGGGGCTAATGTCTCACTTCTTCTGGGCTCTGGATGTATGTCCCTCTTGGCCAAATGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

393

Amino Acids

42.06

Weight (kDa)

6.97

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	79 - 389	1.2e-80	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12750
fragaria_vesca	FvH4_3g12900 FvH4_3g14490 FvH4_3g14490
malus_domestica	MD05G1236500.v1.1 MD05G1236600.v1.1 MD05G1247200.v1.1 MD10G1227800.v1.1
prunus_persica	Prupe.4G117200_v2.0.a1 Prupe.4G129600_v2.0.a1 Prupe.4G129700_v2.0.a1
pyrus_communis	pycom05g21350 pycom05g22310 pycom10g19130
rosa_chinensis	RchiOBHm_Chr5g0021001 RchiOBHm_Chr5g0023861 RchiOBHm_Chr5g0023871
rosa_laevigata	RLG00000032576 RLG00000032741 RLG00000032742
rosa_multiflora	Rmu_sc0001372.1_g000002 Rmu_sc0001372.1_g000005 Rmu_ssc0000027.1_g000003 Rmu_ssc0000244.1_g000011
rosa_roxburghii	Rroxscaffold_1G00055380 Rroxscaffold_1G00057480
rosa_rugosa	Rorug05G0063700 Rorug05G0079800 Rorug05G0079900
rosa_samantha	Rh5AG153300 Rh5AG169900 Rh5AG170000 Rh5BG153000 Rh5BG167200 Rh5BG167300 Rh5CG165600 Rh5CG182800 Rh5DG152400 Rh5DG169300
rosa_wichuraiana	Rw5G013620 Rw5G015360 Rw5G015370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	776
AccII	CGCG	1 cut(s)	662
AciI	CCGC	1 cut(s)	365
AclWI	GGATC	4 cut(s)	1027, 1040, 1102, 1115
AcoI	YGGCCR	3 cut(s)	366, 640, 1164
AcsI	RAATTY	2 cut(s)	312, 738
AfiI	CCNNNNNNNGG	5 cut(s)	172, 302, 355, 473, 1117
AgsI	TTSAA	5 cut(s)	30, 226, 241, 261, 1015
AjnI	CCWGG	2 cut(s)	603, 887
AloI	GAACNNNNNNTCC	2 cut(s)	729, 761
AluBI	AGCT	9 cut(s)	109, 244, 423, 462, 534, 733, 818, 1028, 1114
AluI	AGCT	9 cut(s)	109, 244, 423, 462, 534, 733, 818, 1028, 1114
Alw21I	GWGCWC	2 cut(s)	603, 994
Alw26I	GTCTC	3 cut(s)	292, 971, 1132
Alw44I	GTGCAC	1 cut(s)	599
AlwI	GGATC	4 cut(s)	1027, 1040, 1102, 1115
AlwNI	CAGNNNCTG	1 cut(s)	727
AoxI	GGCC	6 cut(s)	366, 640, 850, 873, 891, 1164
ApaLI	GTGCAC	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	815, 1067
ApoI	RAATTY	2 cut(s)	312, 738
AspLEI	GCGC	1 cut(s)	662
AspS9I	GGNCC	2 cut(s)	850, 891
AsuHPI	GGTGA	1 cut(s)	547
AsuII	TTCGAA	2 cut(s)	693, 840
BaeGI	GKGCMC	1 cut(s)	603
BalI	TGGCCA	1 cut(s)	1166
BamHI	GGATCC	2 cut(s)	1032, 1107
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	1 cut(s)	1145
Bbv12I	GWGCWC	2 cut(s)	603, 994
BbvI	GCAGC	2 cut(s)	827, 1079
BccI	CCATC	2 cut(s)	176, 837
BceAI	ACGGC	1 cut(s)	655
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	2 cut(s)	605, 889
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	292, 971, 1132
BfaI	CTAG	5 cut(s)	209, 245, 380, 1064, 1086
BfmI	CTRYAG	1 cut(s)	538
BglI	GCCNNNNNGGC	1 cut(s)	1172
BisI	GCNGC	3 cut(s)	366, 816, 1068
BlsI	GCNGC	3 cut(s)	367, 817, 1069
Bme1390I	CCNGG	2 cut(s)	605, 889
BmgT120I	GGNCC	2 cut(s)	850, 891
BmiI	GGNNCC	3 cut(s)	778, 1034, 1109
BmrFI	CCNGG	2 cut(s)	605, 889
BmsI	GCATC	3 cut(s)	400, 715, 1031
BpmI	CTGGAG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	440
Bpu14I	TTCGAA	2 cut(s)	693, 840
BpuEI	CTTGAG	2 cut(s)	218, 445
BsaBI	GATNNNNATC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	971
BsaJI	CCNNGG	5 cut(s)	180, 280, 604, 853, 888
BsaWI	WCCGGW	2 cut(s)	406, 670
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 302, 355, 473, 1117
Bse118I	RCCGGY	2 cut(s)	368, 473
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	2 cut(s)	480, 894
Bse8I	GATNNNNATC	1 cut(s)	512
BseBI	CCWGG	2 cut(s)	605, 889
BseDI	CCNNGG	5 cut(s)	180, 280, 604, 853, 888
BseGI	GGATG	4 cut(s)	393, 415, 586, 1154
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	5 cut(s)	172, 302, 355, 473, 1117
BseMI	GCAATG	2 cut(s)	480, 894
BseMII	CTCAG	1 cut(s)	884
BseNI	ACTGG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	603
BseX3I	CGGCCG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	827, 1079
BseYI	CCCAGC	2 cut(s)	733, 1028
Bsh1236I	CGCG	1 cut(s)	662
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	6 cut(s)	368, 642, 852, 875, 893, 1166
BshNI	GGYRCC	1 cut(s)	776
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	2 cut(s)	603, 994
BsiSI	CCGG	5 cut(s)	317, 369, 407, 474, 671
BslFI	GGGAC	5 cut(s)	149, 470, 517, 774, 1141
BslI	CCNNNNNNNGG	5 cut(s)	172, 302, 355, 473, 1117
BsmAI	GTCTC	3 cut(s)	292, 971, 1132
BsmFI	GGGAC	5 cut(s)	149, 470, 517, 774, 1141
BsmI	GAATGC	2 cut(s)	197, 1095
BsnI	GGCC	6 cut(s)	368, 642, 852, 875, 893, 1166
Bso31I	GGTCTC	1 cut(s)	971
Bsp119I	TTCGAA	2 cut(s)	693, 840
Bsp1286I	GDGCHC	3 cut(s)	603, 994, 1145
Bsp143I	GATC	5 cut(s)	351, 513, 545, 1032, 1107
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	6 cut(s)	368, 642, 852, 875, 893, 1166
BspCNI	CTCAG	1 cut(s)	883
BspFNI	CGCG	1 cut(s)	662
BspHI	TCATGA	1 cut(s)	1077
BspLI	GGNNCC	3 cut(s)	778, 1034, 1109
BspPI	GGATC	4 cut(s)	1027, 1040, 1102, 1115
BspT104I	TTCGAA	2 cut(s)	693, 840
BspT107I	GGYRCC	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	971
BsrDI	GCAATG	2 cut(s)	480, 894
BsrFI	RCCGGY	2 cut(s)	368, 473
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	2 cut(s)	368, 473
BssECI	CCNNGG	5 cut(s)	180, 280, 604, 853, 888
BssMI	GATC	5 cut(s)	351, 513, 545, 1032, 1107
BssT1I	CCWWGG	2 cut(s)	280, 853
Bst2UI	CCWGG	2 cut(s)	605, 889
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	3 cut(s)	138, 144, 579
BstBI	TTCGAA	2 cut(s)	693, 840
BstDEI	CTNAG	3 cut(s)	440, 870, 1103
BstDSI	CCRYGG	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	4 cut(s)	393, 415, 586, 1154
BstFNI	CGCG	1 cut(s)	662
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	5 cut(s)	354, 516, 548, 1035, 1110
BstMAI	GTCTC	3 cut(s)	292, 971, 1132
BstMBI	GATC	5 cut(s)	351, 513, 545, 1032, 1107
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 429, 1172
BstNI	CCWGG	2 cut(s)	605, 889
BstNSI	RCATGY	2 cut(s)	620, 632
BstSCI	CCNGG	2 cut(s)	603, 887
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	603
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	2 cut(s)	827, 1079
BstX2I	RGATCY	2 cut(s)	1032, 1107
BstYI	RGATCY	2 cut(s)	1032, 1107
BstZI	CGGCCG	1 cut(s)	366
BsuRI	GGCC	6 cut(s)	368, 642, 852, 875, 893, 1166
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	4 cut(s)	393, 415, 586, 1154
BtsI	GCAGTG	1 cut(s)	563
BtsIMutI	CAGTG	3 cut(s)	89, 563, 576
CaiI	CAGNNNCTG	1 cut(s)	727
CciI	TCATGA	1 cut(s)	1077
CfoI	GCGC	1 cut(s)	662
Cfr10I	RCCGGY	2 cut(s)	368, 473
Cfr13I	GGNCC	2 cut(s)	850, 891
DdeI	CTNAG	3 cut(s)	440, 870, 1103
DpnI	GATC	5 cut(s)	353, 515, 547, 1034, 1109
DpnII	GATC	5 cut(s)	351, 513, 545, 1032, 1107
EaeI	YGGCCR	3 cut(s)	366, 640, 1164
EagI	CGGCCG	1 cut(s)	366
Eam1104I	CTCTTC	3 cut(s)	138, 144, 579
EarI	CTCTTC	3 cut(s)	138, 144, 579
EclXI	CGGCCG	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	280, 853
Eco24I	GRGCYC	1 cut(s)	1145
Eco31I	GGTCTC	1 cut(s)	971
Eco32I	GATATC	2 cut(s)	717, 768
Eco52I	CGGCCG	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	603, 887
EcoRV	GATATC	2 cut(s)	717, 768
EcoT14I	CCWWGG	2 cut(s)	280, 853
EcoT38I	GRGCYC	1 cut(s)	1145
ErhI	CCWWGG	2 cut(s)	280, 853
FaqI	GGGAC	5 cut(s)	149, 470, 517, 774, 1141
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	366, 816, 1068
FokI	GGATG	4 cut(s)	380, 422, 593, 1161
FriOI	GRGCYC	1 cut(s)	1145
Fsp4HI	GCNGC	3 cut(s)	366, 816, 1068
FspBI	CTAG	5 cut(s)	209, 245, 380, 1064, 1086
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	3 cut(s)	366, 816, 1068
GsaI	CCCAGC	2 cut(s)	737, 1032
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	6 cut(s)	368, 642, 852, 875, 893, 1166
HapII	CCGG	5 cut(s)	317, 369, 407, 474, 671
HhaI	GCGC	1 cut(s)	662
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HinfI	GANTC	3 cut(s)	376, 677, 787
HpaII	CCGG	5 cut(s)	317, 369, 407, 474, 671
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	4 cut(s)	471, 601, 622, 1057
Hpy188III	TCNNGA	4 cut(s)	349, 728, 1078, 1146
Hpy8I	GTNNAC	4 cut(s)	471, 601, 622, 1057
HpyAV	CCTTC	7 cut(s)	45, 155, 164, 302, 568, 836, 998
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4V	TGCA	8 cut(s)	195, 601, 616, 668, 864, 899, 1022, 1093
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 429, 1172
HpyF3I	CTNAG	3 cut(s)	440, 870, 1103
HspAI	GCGC	1 cut(s)	660
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	5 cut(s)	351, 513, 545, 1032, 1107
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	2 cut(s)	827, 1079
LweI	GCATC	3 cut(s)	400, 715, 1031
MaeI	CTAG	5 cut(s)	209, 245, 380, 1064, 1086
MalI	GATC	5 cut(s)	353, 515, 547, 1034, 1109
MboI	GATC	5 cut(s)	351, 513, 545, 1032, 1107
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	1032, 1107
MhlI	GDGCHC	3 cut(s)	603, 994, 1145
MlsI	TGGCCA	1 cut(s)	1166
MluCI	AATT	8 cut(s)	196, 312, 696, 738, 756, 833, 933, 939
MluNI	TGGCCA	1 cut(s)	1166
MlyI	GAGTC	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	928
Mox20I	TGGCCA	1 cut(s)	1166
MscI	TGGCCA	1 cut(s)	1166
MseI	TTAA	1 cut(s)	882
MslI	CAYNNNNRTG	5 cut(s)	398, 485, 615, 627, 642
Msp20I	TGGCCA	1 cut(s)	1166
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	5 cut(s)	317, 369, 407, 474, 671
MspR9I	CCNGG	2 cut(s)	605, 889
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	2 cut(s)	197, 1095
MvaI	CCWGG	2 cut(s)	605, 889
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	3 cut(s)	365, 429, 1172
NdeII	GATC	5 cut(s)	351, 513, 545, 1032, 1107
NlaIV	GGNNCC	3 cut(s)	778, 1034, 1109
NmeAIII	GCCGAG	1 cut(s)	152
NspI	RCATGY	2 cut(s)	620, 632
NspV	TTCGAA	2 cut(s)	693, 840
PagI	TCATGA	1 cut(s)	1077
PctI	GAATGC	2 cut(s)	197, 1095
PfeI	GAWTC	2 cut(s)	376, 677
PkrI	GCNGC	3 cut(s)	367, 817, 1069
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	603, 887
PspFI	CCCAGC	2 cut(s)	733, 1028
PspGI	CCWGG	2 cut(s)	603, 887
PspN4I	GGNNCC	3 cut(s)	778, 1034, 1109
PspPI	GGNCC	2 cut(s)	850, 891
PstNI	CAGNNNCTG	1 cut(s)	727
PsuI	RGATCY	2 cut(s)	1032, 1107
PvuII	CAGCTG	1 cut(s)	1028
RseI	CAYNNNNRTG	5 cut(s)	398, 485, 615, 627, 642
SaqAI	TTAA	1 cut(s)	882
SatI	GCNGC	3 cut(s)	366, 816, 1068
Sau3AI	GATC	5 cut(s)	351, 513, 545, 1032, 1107
Sau96I	GGNCC	2 cut(s)	850, 891
SchI	GAGTC	1 cut(s)	796
ScrFI	CCNGG	2 cut(s)	605, 889
SduI	GDGCHC	3 cut(s)	603, 994, 1145
SfaNI	GCATC	3 cut(s)	400, 715, 1031
SfcI	CTRYAG	1 cut(s)	538
SfuI	TTCGAA	2 cut(s)	693, 840
SmiMI	CAYNNNNRTG	5 cut(s)	398, 485, 615, 627, 642
SmlI	CTYRAG	2 cut(s)	233, 424
SmoI	CTYRAG	2 cut(s)	233, 424
Sse9I	AATT	8 cut(s)	196, 312, 696, 738, 756, 833, 933, 939
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	5 cut(s)	209, 245, 380, 1064, 1086
StyD4I	CCNGG	2 cut(s)	603, 887
StyI	CCWWGG	2 cut(s)	280, 853
TaaI	ACNGT	1 cut(s)	653
TaqI	TCGA	5 cut(s)	516, 680, 693, 709, 840
TasI	AATT	8 cut(s)	196, 312, 696, 738, 756, 833, 933, 939
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	376, 677
Tru1I	TTAA	1 cut(s)	882
Tru9I	TTAA	1 cut(s)	882
TscAI	CASTG	3 cut(s)	96, 570, 576
TseI	GCWGC	2 cut(s)	815, 1067
TspDTI	ATGAA	8 cut(s)	116, 382, 469, 597, 605, 737, 1066, 1094
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	96, 570, 576
VneI	GTGCAC	1 cut(s)	599
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	2 cut(s)	312, 738
XceI	RCATGY	2 cut(s)	620, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	901
XspI	CTAG	5 cut(s)	209, 245, 380, 1064, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.