Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002489

Physical Location & Seq

Genomic Coordinates Forward (+)

36233700 .. 36236889

Gene Structure 3190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGACTTCCACCAATCCTCACCATGTCATCGACGACGACGACGACGACAATTTTGATTGGGAAGCGGCGGCGAGAGAAATCGACGTGGTTTACCAGATCAAGGCTTCAAAGCCCTCCTCTACTTCAGATCAATCTTCCCATTTTGCCCCTCCTCCCAGTAACATTAACACCCCAGTGCAAAATCCGATTGCCCCGATCCCTGGCAACAAGAAGAAGGCCGGCACTTCCCGGCAGAGCACCCTCGACAAGTTTATCGGCAGGCCTCCACCAGAGATTCGAGATGTCGAAGAACGAAACCTGGATTGTAGTGAGGGTGATGGGAGGGTGTCCTGTGTTCCAATTGATGCTGAGGCAGCTAAAACTTGGATATACCCAGGAAAAATAGTCTTTGCTGCTCCTTCTCGACCACTTGTTGTGCAACAAATACAAGCGTGTCATAATATTGTAGGAATACCACAGGAATGGACAATTGATATGACAGGTCAGACAAGTCCTACGAAAAGAGCTTGCTTGTGGAAAACTAAACGAGTTTTTTTTGTAACTCCACAAGTGCTGGAGAAGGACATTCAGTCTGGCACATGTGCAGTAGAATACTTGGTATGTTTGGTGATTGATGAAGCTCACCGAGCATTAGGAAACTATTCTTACAGTGTTGCAGTTCGTGAGACTGTCCAGCAAGTTATTGATAACTTATATATATCAACACTTCAATATCGCAATGAAGACGACCCTGATGTCAAACCATATGTCCACAACAGGGAGGTAGAGTTGATTCAGGTTGCAATGGGTCAAGCTGCTGTTGAGATAGACAATAAGCTCTTGGAAGCAATGCATCCGTTTGCATCCAGGCTTTGTGCCATTGGAGTTCTCCCAACTCGAGACATTCAGAATGTATGCCCTTGTCTATTACTTAATTCAAGAGAGAAATTTCGTCAAGCACCTCCAGACCTCCCCCAAATTAAGCCTGGAGACATTGAAGGTTTCTTTGGAGCACTGCTTACACTTTACCACATTCGTAAACTAATATCAAGCCACGGAATAAGGCCTGCATATGAAATGCTTGAAGAAAAATTAAAACAAGGGTATGGCTTTTCTATACTCTCAGTTTCCTCACTGTCTTTATTAGCTCATACTCGGATTCTAATAACTATTTCCTATTATATGTGGAACCATTATGCATTTTATTGTTTACTTTTCTCGAGTCAAATATTCTTTAATCTATGTAGGAACCTTCCCAATTCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0070013 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

Helicase_C ResIII

Protein Analysis

416

Amino Acids

46.64

Weight (kDa)

5.96

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	126 - 227	7.2e-08	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G35530 AT1G36020
fragaria_vesca	FvH4_7g03750
malus_domestica	MD15G1404400.v1.1
prunus_persica	Prupe.1G551100_v2.0.a1 Prupe.2G019600_v2.0.a1 Prupe.2G019700_v2.0.a1
pyrus_communis	pycom15g36170 pycom15g36180
rosa_chinensis	RchiOBHm_Chr7g0228871 RchiOBHm_Chr7g0228881 RchiOBHm_Chr7g0228951
rosa_laevigata	RLG00000001539 RLG00000002150 RLG00000022432
rosa_multiflora	Rmu_sc0000721.1_g000006 Rmu_sc0004517.1_g000001 Rmu_sc0005913.1_g000001 Rmu_sc0005913.1_g000026 Rmu_sc0011218.1_g000006 Rmu_sc0013945.1_g000010
rosa_roxburghii	Rroxscaffold_3G00230830 Rroxscaffold_3G00238230
rosa_rugosa	Rorug07G0252600 Rorug07G0254200
rosa_samantha	Rh7AG405800 Rh7BG333000 Rh7BG385100 Rh7BG385200 Rh7BG385300 Rh7CG423400 Rh7DG341000 Rh7DG399800 Rh7DG399900
rosa_wichuraiana	Rw7G033620 Rw7G033650 Rw7G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	734
AciI	CCGC	2 cut(s)	65, 68
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	100, 200, 757
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	5 cut(s)	108, 710, 918, 977, 1064
AhdI	GACNNNNNGTC	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	5 cut(s)	199, 297, 373, 845, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	969, 1001
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	6 cut(s)	356, 506, 620, 794, 817, 1127
AluI	AGCT	6 cut(s)	356, 506, 620, 794, 817, 1127
Alw21I	GWGCWC	2 cut(s)	239, 994
Alw26I	GTCTC	3 cut(s)	659, 873, 963
AlwI	GGATC	1 cut(s)	190
Ama87I	CYCGRG	2 cut(s)	876, 1198
AoxI	GGCC	3 cut(s)	216, 260, 1043
ApeKI	GCWGC	3 cut(s)	353, 392, 794
ApoI	RAATTY	1 cut(s)	926
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 732, 764
Asp700I	GAANNNNTTC	1 cut(s)	640
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	4 cut(s)	11, 326, 614, 619
AvaI	CYCGRG	2 cut(s)	876, 1198
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	2 cut(s)	239, 994
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	365, 379, 781
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	5 cut(s)	201, 299, 375, 847, 966
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	659, 873, 963
BisI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
BlsI	GCNGC	5 cut(s)	67, 70, 355, 394, 796
Bme1390I	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmeT110I	CYCGRG	2 cut(s)	876, 1198
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	1169, 1229
BmrFI	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
BmrI	ACTGGG	2 cut(s)	150, 167
BmsI	GCATC	3 cut(s)	334, 841, 851
BmuI	ACTGGG	2 cut(s)	150, 167
BpiI	GAAGAC	1 cut(s)	729
BpmI	CTGGAG	3 cut(s)	575, 927, 987
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	199, 373, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 200, 757
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	156, 173
Bse3DI	GCAATG	3 cut(s)	724, 789, 834
BseBI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
BseDI	CCNNGG	3 cut(s)	199, 373, 1033
BseGI	GGATG	2 cut(s)	832, 842
BseLI	CCNNNNNNNGG	3 cut(s)	100, 200, 757
BseMI	GCAATG	3 cut(s)	724, 789, 834
BseMII	CTCAG	2 cut(s)	339, 1116
BseNI	ACTGG	2 cut(s)	156, 173
BseRI	GAGGAG	2 cut(s)	106, 141
BseXI	GCAGC	3 cut(s)	365, 379, 781
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	218, 262, 1045
BsiHKAI	GWGCWC	2 cut(s)	239, 994
BsiHKCI	CYCGRG	2 cut(s)	876, 1198
BsiSI	CCGG	2 cut(s)	219, 229
BslI	CCNNNNNNNGG	3 cut(s)	100, 200, 757
BsmAI	GTCTC	3 cut(s)	659, 873, 963
BsnI	GGCC	3 cut(s)	218, 262, 1045
BsoBI	CYCGRG	2 cut(s)	876, 1198
Bsp1286I	GDGCHC	2 cut(s)	239, 994
Bsp143I	GATC	3 cut(s)	96, 127, 195
BspACI	CCGC	2 cut(s)	65, 68
BspANI	GGCC	3 cut(s)	218, 262, 1045
BspCNI	CTCAG	2 cut(s)	340, 1115
BspLI	GGNNCC	2 cut(s)	1169, 1229
BspPI	GGATC	1 cut(s)	190
BsrDI	GCAATG	3 cut(s)	724, 789, 834
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	156, 173
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	199, 373, 1033
BssMI	GATC	3 cut(s)	96, 127, 195
Bst2UI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
Bst4CI	ACNGT	3 cut(s)	650, 670, 1116
BstC8I	GCNNGC	4 cut(s)	220, 260, 508, 1047
BstDEI	CTNAG	2 cut(s)	348, 1102
BstDSI	CCRYGG	1 cut(s)	1033
BstF5I	GGATG	2 cut(s)	832, 842
BstKTI	GATC	3 cut(s)	99, 130, 198
BstMAI	GTCTC	3 cut(s)	659, 873, 963
BstMBI	GATC	3 cut(s)	96, 127, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 626
BstNI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	6 cut(s)	199, 227, 297, 373, 845, 964
BstV1I	GCAGC	3 cut(s)	365, 379, 781
BstV2I	GAAGAC	1 cut(s)	729
BstXI	CCANNNNNNTGG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	218, 262, 1045
BtgI	CCRYGG	1 cut(s)	1033
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	832, 842
BtsI	GCAGTG	1 cut(s)	992
BtsIMutI	CAGTG	4 cut(s)	180, 655, 992, 1112
Cac8I	GCNNGC	4 cut(s)	220, 260, 508, 1047
Cfr10I	RCCGGY	1 cut(s)	218
CviAII	CATG	2 cut(s)	23, 579
DdeI	CTNAG	2 cut(s)	348, 1102
DpnI	GATC	3 cut(s)	98, 129, 197
DpnII	GATC	3 cut(s)	96, 127, 195
DrdI	GACNNNNNNGTC	1 cut(s)	734
DriI	GACNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1105I	GACNNNNNGTC	1 cut(s)	568
Eco147I	AGGCCT	2 cut(s)	262, 1045
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	876, 1198
EcoRII	CCWGG	5 cut(s)	199, 297, 373, 845, 964
EcoT22I	ATGCAT	2 cut(s)	834, 1180
FaeI	CATG	2 cut(s)	26, 582
FatI	CATG	2 cut(s)	22, 578
FauNDI	CATATG	2 cut(s)	745, 1051
Fnu4HI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
FokI	GGATG	2 cut(s)	819, 829
Fsp4HI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
GluI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
GsuI	CTGGAG	3 cut(s)	575, 927, 987
HaeIII	GGCC	3 cut(s)	218, 262, 1045
HapII	CCGG	2 cut(s)	219, 229
Hin1II	CATG	2 cut(s)	26, 582
HinfI	GANTC	4 cut(s)	274, 772, 1138, 1201
HpaII	CCGG	2 cut(s)	219, 229
HphI	GGTGA	4 cut(s)	11, 326, 614, 619
Hpy166II	GTNNAC	4 cut(s)	91, 751, 1019, 1190
Hpy188I	TCNGA	5 cut(s)	127, 186, 486, 888, 1137
Hpy188III	TCNNGA	7 cut(s)	278, 402, 662, 878, 918, 944, 1198
Hpy8I	GTNNAC	4 cut(s)	91, 751, 1019, 1190
Hpy99I	CGWCG	6 cut(s)	35, 38, 41, 44, 47, 86
HpyAV	CCTTC	5 cut(s)	208, 408, 553, 971, 1241
HpyCH4III	ACNGT	3 cut(s)	650, 670, 1116
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	9 cut(s)	178, 418, 584, 656, 782, 832, 842, 1049, 1178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 626
HpyF3I	CTNAG	2 cut(s)	348, 1102
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	26, 582
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	96, 127, 195
LmnI	GCTCC	2 cut(s)	400, 989
Lsp1109I	GCAGC	3 cut(s)	365, 379, 781
LweI	GCATC	3 cut(s)	334, 841, 851
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	158, 538
MalI	GATC	3 cut(s)	98, 129, 197
MboI	GATC	3 cut(s)	96, 127, 195
MboII	GAAGA	5 cut(s)	126, 223, 299, 734, 1076
MfeI	CAATTG	2 cut(s)	339, 468
MhlI	GDGCHC	2 cut(s)	239, 994
MluCI	AATT	8 cut(s)	49, 339, 468, 913, 926, 957, 1070, 1237
MlyI	GAGTC	1 cut(s)	1210
Mph1103I	ATGCAT	2 cut(s)	834, 1180
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	640
MseI	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
MslI	CAYNNNNRTG	2 cut(s)	173, 460
MspI	CCGG	2 cut(s)	219, 229
MspR9I	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
MunI	CAATTG	2 cut(s)	339, 468
MvaI	CCWGG	5 cut(s)	201, 299, 375, 847, 966
MwoI	GCNNNNNNNGC	2 cut(s)	353, 626
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	229
NdeI	CATATG	2 cut(s)	745, 1051
NdeII	GATC	3 cut(s)	96, 127, 195
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	26, 582
NlaIV	GGNNCC	2 cut(s)	1169, 1229
NsiI	ATGCAT	2 cut(s)	834, 1180
NspI	RCATGY	1 cut(s)	582
OliI	CACNNNNGTG	1 cut(s)	173
PaeR7I	CTCGAG	2 cut(s)	876, 1198
PceI	AGGCCT	2 cut(s)	262, 1045
PciI	ACATGT	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 39, 42
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	640
PfeI	GAWTC	3 cut(s)	274, 772, 1138
PkrI	GCNGC	5 cut(s)	67, 70, 355, 394, 796
PleI	GAGTC	1 cut(s)	1209
PpsI	GAGTC	1 cut(s)	1209
PscI	ACATGT	1 cut(s)	578
Psp6I	CCWGG	5 cut(s)	199, 297, 373, 845, 964
PspGI	CCWGG	5 cut(s)	199, 297, 373, 845, 964
PspN4I	GGNNCC	2 cut(s)	1169, 1229
RseI	CAYNNNNRTG	2 cut(s)	173, 460
SaqAI	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
SatI	GCNGC	5 cut(s)	66, 69, 354, 393, 795
Sau3AI	GATC	3 cut(s)	96, 127, 195
SchI	GAGTC	1 cut(s)	1210
ScrFI	CCNGG	6 cut(s)	201, 229, 299, 375, 847, 966
SduI	GDGCHC	2 cut(s)	239, 994
SfaNI	GCATC	3 cut(s)	334, 841, 851
Sfr274I	CTCGAG	2 cut(s)	876, 1198
SlaI	CTCGAG	2 cut(s)	876, 1198
SmiMI	CAYNNNNRTG	2 cut(s)	173, 460
SmlI	CTYRAG	2 cut(s)	876, 1198
SmoI	CTYRAG	2 cut(s)	876, 1198
Sse9I	AATT	8 cut(s)	49, 339, 468, 913, 926, 957, 1070, 1237
SseBI	AGGCCT	2 cut(s)	262, 1045
SsiI	CCGC	2 cut(s)	65, 68
SspI	AATATT	2 cut(s)	442, 1209
StuI	AGGCCT	2 cut(s)	262, 1045
StyD4I	CCNGG	6 cut(s)	199, 227, 297, 373, 845, 964
TaaI	ACNGT	3 cut(s)	650, 670, 1116
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	8 cut(s)	30, 81, 243, 277, 285, 403, 877, 1199
TasI	AATT	8 cut(s)	49, 339, 468, 913, 926, 957, 1070, 1237
TauI	GCSGC	2 cut(s)	68, 71
TfiI	GAWTC	3 cut(s)	274, 772, 1138
Tru1I	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
Tru9I	TTAA	5 cut(s)	165, 912, 960, 1073, 1215
TscAI	CASTG	4 cut(s)	180, 655, 999, 1119
TseI	GCWGC	3 cut(s)	353, 392, 794
TspDTI	ATGAA	3 cut(s)	630, 735, 1068
TspGWI	ACGGA	2 cut(s)	825, 1050
TspRI	CASTG	4 cut(s)	180, 655, 999, 1119
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	1 cut(s)	582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	962
XhoI	CTCGAG	2 cut(s)	876, 1198
XmnI	GAANNNNTTC	1 cut(s)	640
Zsp2I	ATGCAT	2 cut(s)	834, 1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.