RchiOBHm_Chr4g0390581

Mediator of RNA polymerase II transcription subunit 15a-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001760
Physical Location & Seq
Forward (+)
5867307 .. 5869576
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 945 bp
ATGTTGGGACAAGCAGAGCTAAGTGCTTTTGCTTCAGACATTGGTTCAATAGTTTGTATGATTGATAGAATGTCTGGACCAGATAATGTTCAGAGATCTAGAGCTGCGATTGGTGATTTGGCAGACATGACCGATTTTCATTTGCAGGAGAGATACTTTGCCTGGCAGGAAACAACTGTTGGAACAAGGATAATGAAGCGTCACAGAAGTATGCCAATTAGTTATGGGGCTTCAGAAAATAGTAGTATAAATGATAGCTTGTCACATCTAAGTGATATGGAAAATTTAGACTTGGACTCACCTACAATATCTTATAGCAAACGGCGTAGGCTTGAGGTGAATCATCTCTTAGAAGAAATTACCGCTATTAACCAACAACTAATAGACACTGTTTTAGATATTAGAGATGGAGAGACTATTCCATCGGTAGCCTCAGCTCCAATTCTCGATGGTGAAGGAACCATTATTAGGTGTTCCTTCATTGTTGTAGCCGTTGCTCCTAATCTGAAGTCTGAATGTGTTCTAGCTCCAATGCCTCTGCGATTGCTTGTTCTTGCAAATTATCCTTTGTGCTCTCCTATATTTATGGACAAGTTGAAAGTGGAAGTCAGTGTGTACCTCATGTTAATTACAACTTTCCTGATTGCTCTGGGTTTCTATATATTGGGTGGAATAAGGTTTAATCTTGGTTCACATGTTCATCAAAATGAGGGGGATGTTGATATAGCTTTATCCAATATGCCTATTATTAATGAAAAGTTTGATGGAGATGTTAAGACTCTGTATTTTGAGGAATCTCCAATCATGTCAACTTATTTGGTGGCTATTGTTGTTGGCCTATTTGATCATATTGAAGATACAACATCTGATGGGGTAAAGGTTCGTGCATATTGCCCTATTGGGAAGAGTGATAAAAGGGGAGTTTGCTTTAAATGTTGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIX_2

Protein Analysis

314

Amino Acids

34.75

Weight (kDa)

4.96

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 3 cut(s) 18, 216, 527
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 1 cut(s) 468
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 3 cut(s) 48, 598, 854
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 6 cut(s) 19, 104, 258, 437, 527, 728
AluI AGCT 6 cut(s) 19, 104, 258, 437, 527, 728
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 1 cut(s) 407
AoxI GGCC 1 cut(s) 835
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 283
AseI ATTAAT 1 cut(s) 750
Asp700I GAANNNNTTC 1 cut(s) 519
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 4 cut(s) 125, 291, 349, 464
AvaII GGWCC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 575
BbvCI CCTCAGC 1 cut(s) 433
BbvI GCAGC 1 cut(s) 91
BccI CCATC 5 cut(s) 401, 430, 443, 758, 863
BceAI ACGGC 2 cut(s) 338, 476
BciT130I CCWGG 1 cut(s) 163
BclI TGATCA 1 cut(s) 844
BcoDI GTCTC 1 cut(s) 407
BfaI CTAG 2 cut(s) 99, 524
BglII AGATCT 1 cut(s) 95
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 163
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 575
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 837
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 2 cut(s) 95, 844
BspACI CCGC 1 cut(s) 363
BspANI GGCC 1 cut(s) 837
BspCNI CTCAG 1 cut(s) 446
BspLI GGNNCC 1 cut(s) 460
BssMI GATC 2 cut(s) 95, 844
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 178, 391
Bst6I CTCTTC 1 cut(s) 899
BstDEI CTNAG 4 cut(s) 20, 269, 349, 433
BstF5I GGATG 1 cut(s) 721
BstKTI GATC 2 cut(s) 98, 847
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 2 cut(s) 95, 844
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 1 cut(s) 837
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 387, 616
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 616
CviAII CATG 4 cut(s) 127, 622, 695, 805
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 4 cut(s) 20, 269, 349, 433
DpnI GATC 2 cut(s) 97, 846
DpnII GATC 2 cut(s) 95, 844
DraI TTTAAA 1 cut(s) 931
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 3 cut(s) 18, 216, 527
EcoRII CCWGG 1 cut(s) 161
FaeI CATG 4 cut(s) 130, 625, 698, 808
FaqI GGGAC 1 cut(s) 21
FatI CATG 4 cut(s) 126, 621, 694, 804
FbaI TGATCA 1 cut(s) 844
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 728
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 2 cut(s) 99, 524
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 837
HgaI GACGC 1 cut(s) 188
Hin1II CATG 4 cut(s) 130, 625, 698, 808
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HinfI GANTC 4 cut(s) 296, 340, 778, 794
HphI GGTGA 4 cut(s) 125, 291, 349, 464
Hpy166II GTNNAC 3 cut(s) 616, 692, 810
Hpy188I TCNGA 6 cut(s) 37, 93, 235, 507, 514, 868
Hpy188III TCNNGA 4 cut(s) 75, 99, 446, 640
Hpy8I GTNNAC 3 cut(s) 616, 692, 810
HpyAV CCTTC 2 cut(s) 449, 487
HpyCH4III ACNGT 2 cut(s) 178, 391
HpyCH4V TGCA 3 cut(s) 145, 557, 887
HpyF3I CTNAG 4 cut(s) 20, 269, 349, 433
Hsp92II CATG 4 cut(s) 130, 625, 698, 808
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 2 cut(s) 95, 844
LmnI GCTCC 3 cut(s) 442, 502, 532
LpnPI CCDG 8 cut(s) 60, 93, 131, 148, 152, 175, 635, 653
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 2 cut(s) 99, 524
MaeIII GTNAC 2 cut(s) 200, 261
MalI GATC 2 cut(s) 97, 846
MboI GATC 2 cut(s) 95, 844
MboII GAAGA 3 cut(s) 365, 866, 916
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 6 cut(s) 216, 283, 357, 441, 559, 627
MlyI GAGTC 2 cut(s) 290, 772
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 6 cut(s) 328, 442, 546, 629, 703, 784
MroXI GAANNNNTTC 1 cut(s) 519
MseI TTAA 7 cut(s) 369, 626, 681, 750, 774, 930, 943
MslI CAYNNNNRTG 2 cut(s) 270, 705
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
NdeII GATC 2 cut(s) 95, 844
NlaIII CATG 4 cut(s) 130, 625, 698, 808
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 2 cut(s) 200, 261
NspI RCATGY 1 cut(s) 698
PciI ACATGT 1 cut(s) 694
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 2 cut(s) 340, 794
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 2 cut(s) 290, 772
PpsI GAGTC 2 cut(s) 290, 772
PscI ACATGT 1 cut(s) 694
PshBI ATTAAT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 2 cut(s) 270, 705
SaqAI TTAA 7 cut(s) 369, 626, 681, 750, 774, 930, 943
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 2 cut(s) 95, 844
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 2 cut(s) 290, 772
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 575
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 270, 705
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 6 cut(s) 216, 283, 357, 441, 559, 627
SsiI CCGC 1 cut(s) 363
SspMI CTAG 2 cut(s) 99, 524
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 178, 391
TaqI TCGA 1 cut(s) 447
TaqII GACCGA 1 cut(s) 146
TasI AATT 6 cut(s) 216, 283, 357, 441, 559, 627
TfiI GAWTC 2 cut(s) 340, 794
Tru1I TTAA 7 cut(s) 369, 626, 681, 750, 774, 930, 943
Tru9I TTAA 7 cut(s) 369, 626, 681, 750, 774, 930, 943
TscAI CASTG 2 cut(s) 394, 616
TseFI GTSAC 2 cut(s) 200, 261
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 2 cut(s) 200, 261
TspDTI ATGAA 5 cut(s) 128, 209, 469, 689, 768
TspRI CASTG 2 cut(s) 394, 616
VpaK11BI GGWCC 1 cut(s) 77
VspI ATTAAT 1 cut(s) 750
XapI RAATTY 1 cut(s) 283
XbaI TCTAGA 1 cut(s) 98
XceI RCATGY 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 2 cut(s) 99, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.