RchiOBHm_Chr4g0397211

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001549
Physical Location & Seq
Reverse (-)
13559104 .. 13559502
399 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGAATCAGATATTGATACTATTGTTCATCCTCTTGCTCACTAAGACTGAGGCTGCTTGGAATTCCAGACATGTTGAAATTATCAATGATTTGGGTCTAAAAACAGATCTTACCATTCACTGCAAGTCTAAGGATGACGATCTGGGAGTCCATTTGCTTCGCTTTCAAGAGTCCTTTTGGATCAATTTCAAACTGAACATTCTCGGAGGTACACTATTTTTTTGCAGCTTCCAATGGCCTGGCAATTTTCATCACCTTGATGTTTACAATCAAGAGAGAGACAATGTGCCCCCTAAAAAATGTAGGACATGTAGTTACAAGATCAGATCTGATGGTGGACATAGGTTCAATCAGGAATTCCAAGATTTCACTGATTTTTTCCCGTGGAATAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

132

Amino Acids

15.68

Weight (kDa)

6.58

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 24 - 129 2.7e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 2 cut(s) 61, 356
AfaI GTAC 1 cut(s) 211
AflIII ACRYGT 2 cut(s) 70, 308
AgsI TTSAA 4 cut(s) 77, 167, 190, 349
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 188
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 53, 225
ApoI RAATTY 2 cut(s) 61, 356
AsuHPI GGTGA 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 291
BaeI ACNNNNGTAYC 2 cut(s) 8, 41
BbvI GCAGC 2 cut(s) 40, 237
BccI CCATC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 273
BglII AGATCT 2 cut(s) 106, 326
BisI GCNGC 2 cut(s) 54, 226
BlsI GCNGC 2 cut(s) 55, 227
Bme1390I CCNGG 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 2 cut(s) 27, 139
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 2 cut(s) 40, 237
BshFI GGCC 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 5 cut(s) 106, 139, 180, 321, 326
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 5 cut(s) 106, 139, 180, 321, 326
Bst2UI CCWGG 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 42, 48, 129
BstDSI CCRYGG 1 cut(s) 383
BstF5I GGATG 2 cut(s) 27, 139
BstKTI GATC 5 cut(s) 109, 142, 183, 324, 329
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 5 cut(s) 106, 139, 180, 321, 326
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 2 cut(s) 74, 312
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 40, 237
BstX2I RGATCY 2 cut(s) 106, 326
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 2 cut(s) 106, 326
BsuRI GGCC 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 2 cut(s) 27, 139
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 369
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 71, 309
CviJI RGCY 3 cut(s) 53, 228, 238
CviKI_1 RGCY 3 cut(s) 53, 228, 238
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 42, 48, 129
DpnI GATC 5 cut(s) 108, 141, 182, 323, 328
DpnII GATC 5 cut(s) 106, 139, 180, 321, 326
EcoRI GAATTC 2 cut(s) 61, 356
EcoRII CCWGG 1 cut(s) 238
FaeI CATG 2 cut(s) 74, 312
FaiI YATR 3 cut(s) 72, 310, 342
FatI CATG 2 cut(s) 70, 308
Fnu4HI GCNGC 2 cut(s) 54, 226
FokI GGATG 2 cut(s) 14, 146
Fsp4HI GCNGC 2 cut(s) 54, 226
GluI GCNGC 2 cut(s) 54, 226
HaeIII GGCC 1 cut(s) 238
Hin1II CATG 2 cut(s) 74, 312
HinfI GANTC 3 cut(s) 4, 147, 170
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 212, 265, 338
Hpy188I TCNGA 4 cut(s) 9, 206, 326, 331
Hpy188III TCNNGA 4 cut(s) 66, 167, 272, 353
Hpy8I GTNNAC 3 cut(s) 212, 265, 338
HpyCH4V TGCA 2 cut(s) 123, 225
HpyF3I CTNAG 3 cut(s) 42, 48, 129
Hsp92II CATG 2 cut(s) 74, 312
Kzo9I GATC 5 cut(s) 106, 139, 180, 321, 326
LpnPI CCDG 5 cut(s) 79, 128, 225, 252, 338
Lsp1109I GCAGC 2 cut(s) 40, 237
MaeIII GTNAC 1 cut(s) 314
MalI GATC 5 cut(s) 108, 141, 182, 323, 328
MboI GATC 5 cut(s) 106, 139, 180, 321, 326
MflI RGATCY 2 cut(s) 106, 326
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 5 cut(s) 61, 78, 184, 244, 356
MlyI GAGTC 2 cut(s) 156, 179
MnlI CCTC 3 cut(s) 41, 43, 200
MslI CAYNNNNRTG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
NdeII GATC 5 cut(s) 106, 139, 180, 321, 326
NlaIII CATG 2 cut(s) 74, 312
NspI RCATGY 2 cut(s) 74, 312
PciI ACATGT 2 cut(s) 70, 308
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 55, 227
PleI GAGTC 2 cut(s) 155, 178
PpsI GAGTC 2 cut(s) 155, 178
PscI ACATGT 2 cut(s) 70, 308
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PsuI RGATCY 2 cut(s) 106, 326
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 258
SatI GCNGC 2 cut(s) 54, 226
Sau3AI GATC 5 cut(s) 106, 139, 180, 321, 326
SchI GAGTC 2 cut(s) 156, 179
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 291
SetI ASST 4 cut(s) 211, 230, 258, 347
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 5 cut(s) 61, 78, 184, 244, 356
StyD4I CCNGG 1 cut(s) 238
TasI AATT 5 cut(s) 61, 78, 184, 244, 356
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 2 cut(s) 125, 376
TseI GCWGC 2 cut(s) 53, 225
TspDTI ATGAA 3 cut(s) 16, 17, 239
TspRI CASTG 2 cut(s) 125, 376
XapI RAATTY 2 cut(s) 61, 356
XceI RCATGY 2 cut(s) 74, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.