Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001701

Physical Location & Seq

Genomic Coordinates Forward (+)

1025105 .. 1031277

Gene Structure 6173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2745 bp

ATGGCCACCAAGCGCAAGTCGAAGCGATCTCCGGCTTCTTCTTCCGCCGCGAAGAAGCTGAAGCAGGAGGAGAAGGATGTCTTTTTGCCGGAGAGTAGTGAAATCGAAACCGAAACCGAAACCTCAACGGCGACGAAGGCGAAGCCGAAGCGATCTAAGGCTGGATCTTCATCCGCATCTGCGAAGTTGAAGGAGCCGGCGGTGGAGGAAGAGTCGGTACTGGAGAGTACCGAAACGGCCGAGAAGGTTTCGGAGAGTAGCGAAACGGCTACAATGGAGGCGAGTGTGCCCAAGTCGAGGAAGTACAGTAAGAAGGAGAGTAAGGGGAGCGGTGGTTCTGAGGCTAATAATGTGGCTGATGAGGATGTGGTGATGTCTGAGGCTAGGTTTCTCGGTGAGCCGGTTGAACCGGAGGAGGCTCGCCGGAGATGGCCCCACCGATATGCTGCTCCTCCGACTCAGAAGAAGGCAAACAACGCCAACGATGATGAAGATTTTCTTGAGGGTGGTCGACACTTCACAAAGGCAGAGGTTGATGGATGTATCTATGATCTTTATGATGATGCACATGTAAAAGCTGGCAAAGGAGAACAACCTTACATTTGTAAAATTATAGAGATGTTTGAGGCAGTTGATGGGCTACCCTATTTTACTGCTCAGTGGTTCTACAGAGCGAAAGATACTGTCATAGAAGGTTGCTTCGATATTGATTCAAGGCGTGTATTTTATTCAGATGTTACAAATTACAATGAGTTGGAATGTCTTCTTGGGAAACTGGATATTGCGAGATTTGGTTTAGATATTGACCCTGATGTAAAGTGCAAACTGATTGAGAGCTGTACCTATTATTGCGACACTAAATATCTGTTGCCTTATTCCACCTTTGTCAACTTCCCACCTGAAAATGTGCAGGCTGGAAGTGATAACTCATCAACAATTTCCAGTGAGATTGACATTAGCTGTTCTCGTGCGGTTAACTCGGAACTTGAAAAAACTTCCACAGTTGTGGAGCAAGGCAAACCAGAAGCAACTGTACTTGACTTGTATTCTGGTTGTGGAGGGATGTCTACTGGCCTATGCCTTGGGGCAAACTCGGCAAACTTAAATCTTGTTACGAGATGGGCTGTGGATCTGAATGAACATGCTATAAAAAGTCTGAAGATAAACCATGAAGAAACTGAGGTTCGGGTAGAATCTGCGGATGATTTTCTCTCATTGCTGAAAAAGTGGAAGGGACTTTGTGTTCATTTTAAAGTGGTTAAACCTGATGGTTCAGAAACACCGTTCAGTGTATTCACAACAAAAGATGCTAAAGAGGAAGAGGAGGATGTGGAGGCAGAGGATGATGATGATGATGCAGAATCTGAAGTTTATGAAGTTGAAAAAATACTTGGTATACGTTATGGAAAAGCCAAAAATGGAGAAGAGAAGGAATTGTTGTTTAAGGTCAAATGGAAAGGATATGGAGCTGAGTATGATACTTGGGAGCCCCTAGATTTACTGACGGGTTGTGAGGAGAGCATACAGGAATTTGTTTCTCATGTATACCAGTCCAAACTGTTGCCATTACCTGGTGATGTGGATGTTGTATGTGGTGGTCCTCCATGCCAAGGAATTAGTGGTTTCAATAGGTTCAGGAACTCTGAAAGTCCATTAGATGACGAGAAGAACAAGCAATTGGCTGTCTTCATGGACATAGTAGATTATCTAAAGCCCAAGTATGTGCTGATGGAAAATGTAGTGGATCTTTTGAAATTTGCTGATGGGTTTTTAGGACGGTATGCTTTGGGGAGGTTAGTTGGAATGAACTACCAAGCAAGGATGGGTATGATGTGCGCAGGTGCATATGGTCTACCTCAATTCCGTATGCGGGTATTTTATTGGGGGGCCCTTCCTACTGAGAGGTTGCCTCAATTCCCACTGCCAACCCATGATGTAGTGTTTAGGGGTCAGATTCCTACTAAATGGGAGCAAAACTGTGTTGCTTACAATGAAGGCCATGATCATACATTGGGAAGAAAGCTTTTGTTGGAGGATGCACTCTCAGATCTTCCCGAGGTTGGAAACAATGAAAACCGTGACGTAATGCCTTATGGAAAGCAACCTCAGACAGAGTTTCAGAAATTTATTCGGCTTAGCAAAGACGGTTTTCTAGGGACTTCAAAGAAGTTGCACTCAAATGAGATGCTTTATGATCACCGCCCTCTGAAATTGAATGCTGATGATCATGAACGTGTTTGTCGTGTCCCTAAGGAAAAGGGTGCGAACTTTAGGAATCTACCTGGGGTTCTTGTTGGTGCTGATAATAAAGTAATGTGGGATCCAGAAGTAGAGAGGGTTTTATTAAAATCTGGGAAACCTTTGGTCCCTGATTATGCAATGTCATTTGTGAAAGGACATTCATCAAAACCTTTTGGACGTTTATGGTGGGATGAGATTGTTTCCACAGTTGTTACCCGGGCGGAGCCGCATAATCAGGCAATTTTGCATCCTCAACAAGATCGGGTATTGACAGTTCGTGAAAATGCAAGACTACAAGGATTTCCTGACTACTACCAGCTTTCTGGCCCAATCAAAGAGAGATATATGCAAATTGGAAATGCTGTAGCTGTTCCTGTTTCACGTGCACTGGGTTACACATTAGGTTTGGCATATAAGGGTTCTGCTGGTGAGGATTCTTTGTTTGAGCTGCCCAAAGAAATGCATTTGCCTAACGGATGTTTTGAAGATGGAGATTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH Chromo DNA_methylase

Protein Analysis

914

Amino Acids

102.42

Weight (kDa)

5.1

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	195 - 263	1.9e-07	BAH domain
Chromo	PF00385	458 - 513	2.7e-14	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	522 - 880	1.9e-32	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69770
fragaria_vesca	FvH4_1g00970 FvH4_2g39560 FvH4_2g39560 FvH4_2g39560
malus_domestica	MD03G1011100.v1.1 MD03G1011200.v1.1 MD11G1012800.v1.1 MD11G1013000.v1.1 MD11G1013100.v1.1 MD11G1013200.v1.1 MD11G1013700.v1.1
prunus_persica	Prupe.6G011600_v2.0.a1 Prupe.6G011600_v2.0.a1
pyrus_communis	pycom03g00990 pycom11g00840 pycom11g00870 pycom11g00900
rosa_chinensis	RchiOBHm_Chr2g0085701 RchiOBHm_Chr4g0398431 RchiOBHm_Chr4g0444071
rosa_laevigata	RLG00000005861 RLG00000009362 RLG00000015713
rosa_multiflora	Rmu_co8144248.1_g000001 Rmu_sc0009759.1_g000011
rosa_roxburghii	Rroxscaffold_2G00155110 Rroxscaffold_5G00343400 Rroxscaffold_5G00384620
rosa_rugosa	Rorug01G0462700 Rorug04G0007900 Rorug04G0349300 Rorug04G0349400
rosa_samantha	Rh2AG011600 Rh2BG012200 Rh2CG013000 Rh2DG014000 Rh4AG086100 Rh4AG410100 Rh4BG083000 Rh4BG421200 Rh4CG093900 Rh4CG435600 Rh4DG077800 Rh4DG416500
rosa_wichuraiana	Rw2G001030 Rw4G007200 Rw4G035230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1829
Acc16I	TGCGCA	1 cut(s)	1837
Acc36I	ACCTGC	1 cut(s)	1829
AccB7I	CCANNNNNTGG	1 cut(s)	1571
AccBSI	CCGCTC	1 cut(s)	330
AccI	GTMKAC	5 cut(s)	511, 1067, 1396, 1545, 1852
AccII	CGCG	1 cut(s)	50
AclWI	GGATC	5 cut(s)	172, 1137, 1752, 2315, 2328
AcoI	YGGCCR	2 cut(s)	3, 237
AcsI	RAATTY	3 cut(s)	1529, 1754, 2123
AcuI	CTGAAG	3 cut(s)	80, 1178, 1386
AcvI	CACGTG	1 cut(s)	2624
AfaI	GTAC	5 cut(s)	219, 229, 305, 841, 1035
AfiI	CCNNNNNNNGG	5 cut(s)	297, 1571, 1610, 1870, 2060
AflIII	ACRYGT	2 cut(s)	568, 2233
AjnI	CCWGG	2 cut(s)	1570, 2281
AjuI	GAANNNNNNNTTGG	6 cut(s)	750, 782, 1374, 1406, 1661, 1693
AleI	CACNNNNGTG	1 cut(s)	1004
AloI	GAACNNNNNNTCC	4 cut(s)	319, 351, 1227, 1259
AluBI	AGCT	9 cut(s)	58, 578, 837, 960, 1469, 2023, 2560, 2609, 2689
AluI	AGCT	9 cut(s)	58, 578, 837, 960, 1469, 2023, 2560, 2609, 2689
Alw21I	GWGCWC	1 cut(s)	2629
Alw44I	GTGCAC	1 cut(s)	2625
AlwI	GGATC	5 cut(s)	172, 1137, 1752, 2315, 2328
AlwNI	CAGNNNCTG	1 cut(s)	1364
Ama87I	CYCGRG	2 cut(s)	2054, 2457
AoxI	GGCC	7 cut(s)	3, 237, 431, 1072, 1887, 1996, 2566
ApaI	GGGCCC	1 cut(s)	1891
ApaLI	GTGCAC	1 cut(s)	2625
ApeKI	GCWGC	2 cut(s)	446, 2689
ApoI	RAATTY	3 cut(s)	1529, 1754, 2123
Asp700I	GAANNNNTTC	2 cut(s)	495, 762
AspLEI	GCGC	2 cut(s)	15, 1838
AspS9I	GGNCC	6 cut(s)	432, 1598, 1887, 1888, 2365, 2567
AsuC2I	CCSGG	2 cut(s)	2458, 2459
AsuHPI	GGTGA	5 cut(s)	382, 407, 1586, 2189, 2681
AvaI	CYCGRG	2 cut(s)	2054, 2457
AvaII	GGWCC	2 cut(s)	1598, 2365
AxyI	CCTNAGG	1 cut(s)	2250
BaeGI	GKGCMC	3 cut(s)	291, 1891, 2629
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2320
BanII	GRGCYC	2 cut(s)	1491, 1891
BarI	GAAGNNNNNNTAC	4 cut(s)	201, 233, 1017, 1049
BauI	CACGAG	1 cut(s)	966
BbrPI	CACGTG	1 cut(s)	2624
BbsI	GAAGAC	2 cut(s)	755, 1678
Bbv12I	GWGCWC	1 cut(s)	2629
BbvI	GCAGC	2 cut(s)	433, 2676
BccI	CCATC	9 cut(s)	423, 530, 629, 1113, 1262, 1723, 1757, 1816, 2723
BceAI	ACGGC	3 cut(s)	144, 252, 282
BciT130I	CCWGG	2 cut(s)	1572, 2283
BclI	TGATCA	3 cut(s)	2002, 2194, 2224
BcnI	CCSGG	2 cut(s)	2458, 2459
BfaI	CTAG	3 cut(s)	384, 1493, 2153
BfmI	CTRYAG	2 cut(s)	667, 2604
BfuAI	ACCTGC	1 cut(s)	1829
BglII	AGATCT	1 cut(s)	2047
BisI	GCNGC	4 cut(s)	48, 447, 2468, 2690
BlpI	GCTNAGC	1 cut(s)	2135
BlsI	GCNGC	4 cut(s)	49, 448, 2469, 2691
Bme1390I	CCNGG	4 cut(s)	1572, 2283, 2458, 2459
Bme18I	GGWCC	2 cut(s)	1598, 2365
BmeT110I	CYCGRG	2 cut(s)	2054, 2457
BmgT120I	GGNCC	6 cut(s)	432, 1598, 1887, 1888, 2365, 2567
BmiI	GGNNCC	8 cut(s)	195, 434, 1488, 1888, 1889, 2322, 2367, 2466
BmrFI	CCNGG	4 cut(s)	1572, 2283, 2458, 2459
BmrI	ACTGGG	1 cut(s)	2639
BmsI	GCATC	7 cut(s)	185, 553, 1297, 1345, 2026, 2175, 2497
BmuI	ACTGGG	1 cut(s)	2639
BpiI	GAAGAC	2 cut(s)	755, 1678
BplI	GAGNNNNNCTC	2 cut(s)	1894, 1926
BpmI	CTGGAG	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	2135
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	2 cut(s)	2458, 2459
BsaAI	YACGTR	1 cut(s)	2624
BsaBI	GATNNNNATC	1 cut(s)	169
BsaJI	CCNNGG	5 cut(s)	1081, 1609, 2055, 2282, 2457
BsaWI	WCCGGW	1 cut(s)	409
BsaXI	ACNNNNNCTCC	5 cut(s)	197, 227, 319, 349, 2724
Bsc4I	CCNNNNNNNGG	5 cut(s)	297, 1571, 1610, 1870, 2060
Bse118I	RCCGGY	2 cut(s)	196, 400
Bse1I	ACTGG	6 cut(s)	225, 780, 942, 1075, 1549, 2634
Bse21I	CCTNAGG	1 cut(s)	2250
Bse3DI	GCAATG	2 cut(s)	1214, 2385
Bse8I	GATNNNNATC	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	1572, 2283
BseDI	CCNNGG	5 cut(s)	1081, 1609, 2055, 2282, 2457
BseJI	GATNNNNATC	1 cut(s)	169
BseLI	CCNNNNNNNGG	5 cut(s)	297, 1571, 1610, 1870, 2060
BseMI	GCAATG	2 cut(s)	1214, 2385
BseMII	CTCAG	9 cut(s)	330, 369, 473, 671, 1170, 1461, 1890, 2058, 2120
BseNI	ACTGG	6 cut(s)	225, 780, 942, 1075, 1549, 2634
BseRI	GAGGAG	5 cut(s)	83, 428, 441, 1337, 1529
BseSI	GKGCMC	3 cut(s)	291, 1891, 2629
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	433, 2676
BsgI	GTGCAG	1 cut(s)	929
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	7 cut(s)	5, 239, 433, 1074, 1889, 1998, 2568
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	2629
BsiHKCI	CYCGRG	2 cut(s)	2054, 2457
BsiSI	CCGG	7 cut(s)	32, 89, 197, 401, 410, 424, 2458
BslFI	GGGAC	4 cut(s)	1248, 2170, 2231, 2351
BslI	CCNNNNNNNGG	5 cut(s)	297, 1571, 1610, 1870, 2060
BsmFI	GGGAC	4 cut(s)	1248, 2170, 2231, 2351
BsmI	GAATGC	1 cut(s)	2221
BsnI	GGCC	7 cut(s)	5, 239, 433, 1074, 1889, 1998, 2568
BsoBI	CYCGRG	2 cut(s)	2054, 2457
Bsp120I	GGGCCC	1 cut(s)	1887
Bsp1286I	GDGCHC	4 cut(s)	291, 1491, 1891, 2629
Bsp1720I	GCTNAGC	1 cut(s)	2135
BspANI	GGCC	7 cut(s)	5, 239, 433, 1074, 1889, 1998, 2568
BspCNI	CTCAG	9 cut(s)	331, 370, 472, 670, 1171, 1462, 1891, 2057, 2119
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	2227
BspLI	GGNNCC	8 cut(s)	195, 434, 1488, 1888, 1889, 2322, 2367, 2466
BspMI	ACCTGC	1 cut(s)	1829
BspPI	GGATC	5 cut(s)	172, 1137, 1752, 2315, 2328
BsrBI	CCGCTC	1 cut(s)	330
BsrDI	GCAATG	2 cut(s)	1214, 2385
BsrFI	RCCGGY	2 cut(s)	196, 400
BsrI	ACTGG	6 cut(s)	225, 780, 942, 1075, 1549, 2634
BssAI	RCCGGY	2 cut(s)	196, 400
BssECI	CCNNGG	5 cut(s)	1081, 1609, 2055, 2282, 2457
BssNAI	GTATAC	2 cut(s)	1397, 1546
BssSI	CACGAG	1 cut(s)	966
BssT1I	CCWWGG	2 cut(s)	1081, 1609
Bst1107I	GTATAC	2 cut(s)	1397, 1546
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	2 cut(s)	1572, 2283
Bst6I	CTCTTC	3 cut(s)	204, 1314, 1419
BstBAI	YACGTR	1 cut(s)	2624
BstC8I	GCNNGC	4 cut(s)	198, 421, 580, 912
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	15, 1838
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 476, 1094
BstNI	CCWGG	2 cut(s)	1572, 2283
BstNSI	RCATGY	2 cut(s)	572, 1145
BstSCI	CCNGG	4 cut(s)	1570, 2281, 2456, 2457
BstSFI	CTRYAG	2 cut(s)	667, 2604
BstSLI	GKGCMC	3 cut(s)	291, 1891, 2629
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	433, 2676
BstV2I	GAAGAC	2 cut(s)	755, 1678
BstX2I	RGATCY	5 cut(s)	164, 1129, 1744, 2047, 2320
BstXI	CCANNNNNNTGG	2 cut(s)	1006, 2564
BstYI	RGATCY	5 cut(s)	164, 1129, 1744, 2047, 2320
BstZ17I	GTATAC	2 cut(s)	1397, 1546
BstZI	CGGCCG	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	2250
BsuRI	GGCC	7 cut(s)	5, 239, 433, 1074, 1889, 1998, 2568
BtsI	GCAGTG	1 cut(s)	1919
BtsIMutI	CAGTG	5 cut(s)	665, 949, 1294, 1919, 2627
BveI	ACCTGC	1 cut(s)	1829
Cac8I	GCNNGC	4 cut(s)	198, 421, 580, 912
CaiI	CAGNNNCTG	1 cut(s)	1364
CciI	TCATGA	1 cut(s)	2227
CfoI	GCGC	2 cut(s)	15, 1838
Cfr10I	RCCGGY	2 cut(s)	196, 400
Cfr13I	GGNCC	6 cut(s)	432, 1598, 1887, 1888, 2365, 2567
Cfr9I	CCCGGG	1 cut(s)	2457
CsiI	ACCWGGT	1 cut(s)	1570
Csp6I	GTAC	5 cut(s)	218, 228, 304, 840, 1034
CviAII	CATG	9 cut(s)	569, 1142, 1169, 1541, 1605, 1690, 1931, 2000, 2228
CviQI	GTAC	5 cut(s)	218, 228, 304, 840, 1034
DraI	TTTAAA	1 cut(s)	1252
EaeI	YGGCCR	2 cut(s)	3, 237
EagI	CGGCCG	1 cut(s)	237
Eam1104I	CTCTTC	3 cut(s)	204, 1314, 1419
EarI	CTCTTC	3 cut(s)	204, 1314, 1419
EciI	GGCGGA	2 cut(s)	34, 2477
EclXI	CGGCCG	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	1081, 1609
Eco24I	GRGCYC	2 cut(s)	1491, 1891
Eco47I	GGWCC	2 cut(s)	1598, 2365
Eco52I	CGGCCG	1 cut(s)	237
Eco57I	CTGAAG	3 cut(s)	80, 1178, 1386
Eco72I	CACGTG	1 cut(s)	2624
Eco81I	CCTNAGG	1 cut(s)	2250
Eco88I	CYCGRG	2 cut(s)	2054, 2457
EcoO109I	RGGNCCY	2 cut(s)	1887, 1888
EcoRII	CCWGG	2 cut(s)	1570, 2281
EcoT14I	CCWWGG	2 cut(s)	1081, 1609
EcoT22I	ATGCAT	1 cut(s)	2706
EcoT38I	GRGCYC	2 cut(s)	1491, 1891
ErhI	CCWWGG	2 cut(s)	1081, 1609
FaeI	CATG	9 cut(s)	572, 1145, 1172, 1544, 1608, 1693, 1934, 2003, 2231
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 483, 515
FaqI	GGGAC	4 cut(s)	1248, 2170, 2231, 2351
FatI	CATG	9 cut(s)	568, 1141, 1168, 1540, 1604, 1689, 1930, 1999, 2227
FauI	CCCGC	1 cut(s)	1863
FauNDI	CATATG	1 cut(s)	1846
FbaI	TGATCA	3 cut(s)	2002, 2194, 2224
FblI	GTMKAC	5 cut(s)	511, 1067, 1396, 1545, 1852
Fnu4HI	GCNGC	4 cut(s)	48, 447, 2468, 2690
FriOI	GRGCYC	2 cut(s)	1491, 1891
Fsp4HI	GCNGC	4 cut(s)	48, 447, 2468, 2690
FspBI	CTAG	3 cut(s)	384, 1493, 2153
FspI	TGCGCA	1 cut(s)	1837
GlaI	GCGC	2 cut(s)	14, 1837
GluI	GCNGC	4 cut(s)	48, 447, 2468, 2690
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	7 cut(s)	5, 239, 433, 1074, 1889, 1998, 2568
HapII	CCGG	7 cut(s)	32, 89, 197, 401, 410, 424, 2458
HhaI	GCGC	2 cut(s)	15, 1838
Hin1II	CATG	9 cut(s)	572, 1145, 1172, 1544, 1608, 1693, 1934, 2003, 2231
Hin6I	GCGC	2 cut(s)	13, 1836
HinP1I	GCGC	2 cut(s)	13, 1836
HincII	GTYRAC	3 cut(s)	512, 889, 976
HindII	GTYRAC	3 cut(s)	512, 889, 976
HindIII	AAGCTT	1 cut(s)	2021
HinfI	GANTC	8 cut(s)	212, 457, 710, 1193, 1361, 1954, 2275, 2675
HpaI	GTTAAC	1 cut(s)	976
HpaII	CCGG	7 cut(s)	32, 89, 197, 401, 410, 424, 2458
HphI	GGTGA	5 cut(s)	382, 407, 1586, 2189, 2681
Hpy166II	GTNNAC	8 cut(s)	512, 889, 976, 1068, 1397, 1546, 1853, 2627
Hpy188III	TCNNGA	7 cut(s)	500, 1636, 2054, 2228, 2324, 2519, 2546
Hpy8I	GTNNAC	8 cut(s)	512, 889, 976, 1068, 1397, 1546, 1853, 2627
Hpy99I	CGWCG	1 cut(s)	136
HpyCH4IV	ACGT	5 cut(s)	1399, 2082, 2233, 2419, 2623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 476, 1094
HpySE526I	ACGT	5 cut(s)	1399, 2082, 2233, 2419, 2623
Hsp92II	CATG	9 cut(s)	572, 1145, 1172, 1544, 1608, 1693, 1934, 2003, 2231
HspAI	GCGC	2 cut(s)	13, 1836
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Ksp22I	TGATCA	3 cut(s)	2002, 2194, 2224
KspAI	GTTAAC	1 cut(s)	976
LmnI	GCTCC	8 cut(s)	193, 327, 454, 1009, 1466, 1486, 1969, 2464
Lsp1109I	GCAGC	2 cut(s)	433, 2676
LweI	GCATC	7 cut(s)	185, 553, 1297, 1345, 2026, 2175, 2497
MabI	ACCWGGT	1 cut(s)	1570
MaeI	CTAG	3 cut(s)	384, 1493, 2153
MaeII	ACGT	5 cut(s)	1399, 2082, 2233, 2419, 2623
MaeIII	GTNAC	5 cut(s)	736, 1111, 2078, 2452, 2633
MbiI	CCGCTC	1 cut(s)	330
MfeI	CAATTG	1 cut(s)	1676
MflI	RGATCY	5 cut(s)	164, 1129, 1744, 2047, 2320
MhlI	GDGCHC	4 cut(s)	291, 1491, 1891, 2629
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	221, 451
MmeI	TCCRAC	5 cut(s)	479, 735, 1780, 2010, 2041
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	2706
MroNI	GCCGGC	1 cut(s)	196
MroXI	GAANNNNTTC	2 cut(s)	495, 762
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1443, 2345
MslI	CAYNNNNRTG	4 cut(s)	441, 1004, 2178, 2232
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	7 cut(s)	32, 89, 197, 401, 410, 424, 2458
MspR9I	CCNGG	4 cut(s)	1572, 2283, 2458, 2459
MunI	CAATTG	1 cut(s)	1676
Mva1269I	GAATGC	1 cut(s)	2221
MvaI	CCWGG	2 cut(s)	1572, 2283
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	3 cut(s)	137, 476, 1094
NaeI	GCCGGC	1 cut(s)	198
NciI	CCSGG	2 cut(s)	2458, 2459
NdeI	CATATG	1 cut(s)	1846
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	9 cut(s)	572, 1145, 1172, 1544, 1608, 1693, 1934, 2003, 2231
NlaIV	GGNNCC	8 cut(s)	195, 434, 1488, 1888, 1889, 2322, 2367, 2466
NmeAIII	GCCGAG	2 cut(s)	265, 1073
NmuCI	GTSAC	1 cut(s)	2078
NsbI	TGCGCA	1 cut(s)	1837
NsiI	ATGCAT	1 cut(s)	2706
NspI	RCATGY	2 cut(s)	572, 1145
OliI	CACNNNNGTG	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	2227
PaqCI	CACCTGC	1 cut(s)	1829
PciI	ACATGT	1 cut(s)	568
PcsI	WCGNNNNNNNCGW	1 cut(s)	2239
PctI	GAATGC	1 cut(s)	2221
PdiI	GCCGGC	1 cut(s)	198
PdmI	GAANNNNTTC	2 cut(s)	495, 762
PfeI	GAWTC	6 cut(s)	710, 1193, 1361, 1954, 2275, 2675
PflMI	CCANNNNNTGG	1 cut(s)	1571
PkrI	GCNGC	4 cut(s)	49, 448, 2469, 2691
PleI	GAGTC	2 cut(s)	220, 451
PmaCI	CACGTG	1 cut(s)	2624
PmlI	CACGTG	1 cut(s)	2624
PpsI	GAGTC	2 cut(s)	220, 451
Ppu21I	YACGTR	1 cut(s)	2624
PscI	ACATGT	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	1570, 2281
PspCI	CACGTG	1 cut(s)	2624
PspGI	CCWGG	2 cut(s)	1570, 2281
PspN4I	GGNNCC	8 cut(s)	195, 434, 1488, 1888, 1889, 2322, 2367, 2466
PspOMI	GGGCCC	1 cut(s)	1887
PspPI	GGNCC	6 cut(s)	432, 1598, 1887, 1888, 2365, 2567
PsrI	GAACNNNNNNTAC	2 cut(s)	2499, 2531
PstNI	CAGNNNCTG	1 cut(s)	1364
PsuI	RGATCY	5 cut(s)	164, 1129, 1744, 2047, 2320
RsaI	GTAC	5 cut(s)	219, 229, 305, 841, 1035
RsaNI	GTAC	5 cut(s)	218, 228, 304, 840, 1034
RseI	CAYNNNNRTG	4 cut(s)	441, 1004, 2178, 2232
SalI	GTCGAC	1 cut(s)	510
SaqAI	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1443, 2345
SatI	GCNGC	4 cut(s)	48, 447, 2468, 2690
Sau96I	GGNCC	6 cut(s)	432, 1598, 1887, 1888, 2365, 2567
SchI	GAGTC	2 cut(s)	221, 451
ScrFI	CCNGG	4 cut(s)	1572, 2283, 2458, 2459
SduI	GDGCHC	4 cut(s)	291, 1491, 1891, 2629
SexAI	ACCWGGT	1 cut(s)	1570
SfaNI	GCATC	7 cut(s)	185, 553, 1297, 1345, 2026, 2175, 2497
SfcI	CTRYAG	2 cut(s)	667, 2604
SinI	GGWCC	2 cut(s)	1598, 2365
SmaI	CCCGGG	1 cut(s)	2459
SmiMI	CAYNNNNRTG	4 cut(s)	441, 1004, 2178, 2232
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SspMI	CTAG	3 cut(s)	384, 1493, 2153
StyD4I	CCNGG	4 cut(s)	1570, 2281, 2456, 2457
StyI	CCWWGG	2 cut(s)	1081, 1609
TaiI	ACGT	5 cut(s)	1402, 2085, 2236, 2422, 2626
TaqI	TCGA	5 cut(s)	20, 105, 296, 511, 702
TatI	WGTACW	2 cut(s)	303, 1033
TauI	GCSGC	2 cut(s)	50, 2470
TfiI	GAWTC	6 cut(s)	710, 1193, 1361, 1954, 2275, 2675
Tru1I	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1443, 2345
Tru9I	TTAA	6 cut(s)	975, 1103, 1251, 1260, 1443, 2345
TscAI	CASTG	5 cut(s)	665, 949, 1294, 1926, 2634
TseFI	GTSAC	1 cut(s)	2078
TseI	GCWGC	2 cut(s)	446, 2689
Tsp45I	GTSAC	1 cut(s)	2078
TspGWI	ACGGA	2 cut(s)	1853, 2730
TspMI	CCCGGG	1 cut(s)	2457
TspRI	CASTG	5 cut(s)	665, 949, 1294, 1926, 2634
Van91I	CCANNNNNTGG	1 cut(s)	1571
VneI	GTGCAC	1 cut(s)	2625
VpaK11BI	GGWCC	2 cut(s)	1598, 2365
XapI	RAATTY	3 cut(s)	1529, 1754, 2123
XceI	RCATGY	2 cut(s)	572, 1145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1616
XmaI	CCCGGG	1 cut(s)	2457
XmiI	GTMKAC	5 cut(s)	511, 1067, 1396, 1545, 1852
XmnI	GAANNNNTTC	2 cut(s)	495, 762
XspI	CTAG	3 cut(s)	384, 1493, 2153
Zsp2I	ATGCAT	1 cut(s)	2706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.