Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

76451561 .. 76455784

Gene Structure 4224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTCATGGCAGAGCTGGCTGCTCGGAAACATGTTCAATTCATTCTATCGAAAGCAAAGGAAAAGGATTCTTATGAATCAGTTCTGATGGAGCATATAAGATTGAATGGGGCATATTGGGGTTTGACCACTCTTGATCTTCTTGGAAAGCTTGATACTGTCGATGTCAATGAAGTTGTTTCAGAGGTCCTCCAGTGCCAGCATGAATCAGGTGGTTTTGGTGGTAACATTGGACATGACCCACACATACTTTATACCTTAAGTGCCGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATACCGAAAAGGTTGCAAATTATGTAGCCGGGCTGCAAAATGAAGATGGCTCTTTTTCAGGGGACATGTGGGGTGAAGTTGATACGCGGTTTTCGTATATTGCTATCTGTTGTCTAGCATTACTACATCATTTGGATAAAATTAATGTGGAGAAGGCTGTATACTACATATTAAGTTGTAAAAATCACGATGGCGGATTTGGATGCACGCCTGGTGGAGAGTCTCATGCAGGTCAAATTTTTTGTTGTGTGGGTGCTCTAGCTATCACGGGGTCTCTACATTGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTGAAAGCAGGAGGTCTTAATGGTCGTCCTGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTGATCATGATTGATAGAGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGATTGTCAGGACATTGAAAATGGAGGAATTTCAGACAGACCAGATGATGCATGTGATGCCTATCATACATACTTTGGTGTAGCAGGGCTTTCCCTCCTTGAGTATCCAGGGGTGAAACCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATAGGATTATCTTAGGCATAAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

317

Amino Acids

35.01

Weight (kDa)

5.05

Isoelectric Point (pI)

26.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	6 - 302	3.2e-102	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	262, 527
AccBSI	CCGCTC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	394
AciI	CCGC	3 cut(s)	394, 501, 628
AclWI	GGATC	2 cut(s)	743, 887
AcsI	RAATTY	2 cut(s)	543, 795
AflII	CTTAAG	1 cut(s)	259
AflIII	ACRYGT	2 cut(s)	31, 372
AgsI	TTSAA	3 cut(s)	38, 106, 785
AjnI	CCWGG	2 cut(s)	517, 874
AluBI	AGCT	6 cut(s)	16, 151, 569, 670, 751, 899
AluI	AGCT	6 cut(s)	16, 151, 569, 670, 751, 899
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	534, 585
AlwI	GGATC	2 cut(s)	743, 887
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	20, 340
ApoI	RAATTY	2 cut(s)	543, 795
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	187, 601
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	392, 892
AvaII	GGWCC	2 cut(s)	187, 601
BarI	GAAGNNNNNNTAC	2 cut(s)	452, 484
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	7, 327
BccI	CCATC	4 cut(s)	82, 347, 491, 606
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BciT130I	CCWGG	2 cut(s)	519, 876
BciVI	GTATCC	2 cut(s)	301, 882
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	534, 585
BfaI	CTAG	3 cut(s)	422, 566, 705
BfrI	CTTAAG	1 cut(s)	259
BfuAI	ACCTGC	2 cut(s)	262, 527
BfuI	GTATCC	2 cut(s)	301, 882
BisI	GCNGC	3 cut(s)	21, 341, 629
BlsI	GCNGC	3 cut(s)	22, 342, 630
Bme1390I	CCNGG	3 cut(s)	337, 519, 876
Bme18I	GGWCC	2 cut(s)	187, 601
BmgT120I	GGNCC	2 cut(s)	187, 601
BmrFI	CCNGG	3 cut(s)	337, 519, 876
BmsI	GCATC	3 cut(s)	500, 805, 814
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	887
BpuMI	CCSGG	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	875
Bse1I	ACTGG	2 cut(s)	193, 911
Bse8I	GATNNNNATC	1 cut(s)	828
BseBI	CCWGG	2 cut(s)	519, 876
BseDI	CCNNGG	1 cut(s)	875
BseGI	GGATG	2 cut(s)	515, 617
BseJI	GATNNNNATC	1 cut(s)	828
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	2 cut(s)	193, 911
BseXI	GCAGC	2 cut(s)	7, 327
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	534, 585
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	4 cut(s)	136, 711, 735, 892
BspACI	CCGC	3 cut(s)	394, 501, 628
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	714
BspMI	ACCTGC	2 cut(s)	262, 527
BspPI	GGATC	2 cut(s)	743, 887
BspTI	CTTAAG	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	585
BsrBI	CCGCTC	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	193, 911
BssECI	CCNNGG	1 cut(s)	875
BssMI	GATC	4 cut(s)	136, 711, 735, 892
BssNAI	GTATAC	1 cut(s)	469
Bst1107I	GTATAC	1 cut(s)	469
Bst2UI	CCWGG	2 cut(s)	519, 876
Bst4CI	ACNGT	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstC8I	GCNNGC	4 cut(s)	18, 200, 515, 753
BstDEI	CTNAG	2 cut(s)	663, 937
BstF5I	GGATG	2 cut(s)	515, 617
BstFNI	CGCG	1 cut(s)	394
BstKTI	GATC	4 cut(s)	139, 714, 738, 895
BstMAI	GTCTC	2 cut(s)	534, 585
BstMBI	GATC	4 cut(s)	136, 711, 735, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 824
BstNI	CCWGG	2 cut(s)	519, 876
BstNSI	RCATGY	3 cut(s)	35, 376, 822
BstSCI	CCNGG	3 cut(s)	335, 517, 874
BstUI	CGCG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	7, 327
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BstZ17I	GTATAC	1 cut(s)	469
BsuI	GTATCC	2 cut(s)	301, 882
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	515, 617
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	2 cut(s)	262, 527
Cac8I	GCNNGC	4 cut(s)	18, 200, 515, 753
CciI	TCATGA	1 cut(s)	714
Cfr13I	GGNCC	2 cut(s)	187, 601
CviAII	CATG	9 cut(s)	7, 32, 203, 236, 373, 533, 690, 715, 819
DdeI	CTNAG	2 cut(s)	663, 937
DpnI	GATC	4 cut(s)	138, 713, 737, 894
DpnII	GATC	4 cut(s)	136, 711, 735, 892
EciI	GGCGGA	1 cut(s)	516
Eco31I	GGTCTC	1 cut(s)	585
Eco47I	GGWCC	2 cut(s)	187, 601
EcoO109I	RGGNCCY	2 cut(s)	187, 601
EcoRII	CCWGG	2 cut(s)	517, 874
EcoT22I	ATGCAT	1 cut(s)	820
FaeI	CATG	9 cut(s)	10, 35, 206, 239, 376, 536, 693, 718, 822
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	9 cut(s)	6, 31, 202, 235, 372, 532, 689, 714, 818
FbaI	TGATCA	1 cut(s)	711
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	21, 341, 629
FokI	GGATG	2 cut(s)	522, 624
Fsp4HI	GCNGC	3 cut(s)	21, 341, 629
FspBI	CTAG	3 cut(s)	422, 566, 705
GluI	GCNGC	3 cut(s)	21, 341, 629
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	336
Hin1II	CATG	9 cut(s)	10, 35, 206, 239, 376, 536, 693, 718, 822
HindIII	AAGCTT	3 cut(s)	149, 668, 749
HinfI	GANTC	4 cut(s)	68, 77, 206, 527
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	2 cut(s)	392, 892
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	4 cut(s)	27, 87, 184, 802
Hpy188III	TCNNGA	6 cut(s)	134, 494, 662, 674, 715, 776
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	2 cut(s)	454, 614
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	6 cut(s)	271, 323, 343, 513, 536, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 824
HpyF3I	CTNAG	2 cut(s)	663, 937
Hsp92II	CATG	9 cut(s)	10, 35, 206, 239, 376, 536, 693, 718, 822
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	4 cut(s)	136, 711, 735, 892
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	2 cut(s)	7, 327
LweI	GCATC	3 cut(s)	500, 805, 814
MaeI	CTAG	3 cut(s)	422, 566, 705
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	4 cut(s)	138, 713, 737, 894
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	4 cut(s)	136, 711, 735, 892
MboII	GAAGA	2 cut(s)	131, 362
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	5 cut(s)	38, 325, 447, 543, 795
MlyI	GAGTC	1 cut(s)	536
MnlI	CCTC	5 cut(s)	178, 200, 638, 785, 872
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	4 cut(s)	260, 450, 479, 651
MspCI	CTTAAG	1 cut(s)	259
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	3 cut(s)	337, 519, 876
MvaI	CCWGG	2 cut(s)	519, 876
MvnI	CGCG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	17, 824
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	4 cut(s)	136, 711, 735, 892
NlaIII	CATG	9 cut(s)	10, 35, 206, 239, 376, 536, 693, 718, 822
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	3 cut(s)	35, 376, 822
PagI	TCATGA	1 cut(s)	714
PciI	ACATGT	2 cut(s)	31, 372
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	68, 77, 206
PkrI	GCNGC	3 cut(s)	22, 342, 630
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PpuMI	RGGWCCY	2 cut(s)	187, 601
PscI	ACATGT	2 cut(s)	31, 372
PshBI	ATTAAT	1 cut(s)	450
Psp5II	RGGWCCY	2 cut(s)	187, 601
Psp6I	CCWGG	2 cut(s)	517, 874
PspGI	CCWGG	2 cut(s)	517, 874
PspPI	GGNCC	2 cut(s)	187, 601
PspPPI	RGGWCCY	2 cut(s)	187, 601
PsuI	RGATCY	1 cut(s)	892
SaqAI	TTAA	4 cut(s)	260, 450, 479, 651
SatI	GCNGC	3 cut(s)	21, 341, 629
Sau3AI	GATC	4 cut(s)	136, 711, 735, 892
Sau96I	GGNCC	2 cut(s)	187, 601
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	3 cut(s)	337, 519, 876
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	3 cut(s)	500, 805, 814
SinI	GGWCC	2 cut(s)	187, 601
SmlI	CTYRAG	2 cut(s)	259, 866
SmoI	CTYRAG	2 cut(s)	259, 866
Sse9I	AATT	5 cut(s)	38, 325, 447, 543, 795
SsiI	CCGC	3 cut(s)	394, 501, 628
SspMI	CTAG	3 cut(s)	422, 566, 705
StyD4I	CCNGG	3 cut(s)	335, 517, 874
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	50, 162
TasI	AATT	5 cut(s)	38, 325, 447, 543, 795
TauI	GCSGC	1 cut(s)	631
TfiI	GAWTC	3 cut(s)	68, 77, 206
Tru1I	TTAA	4 cut(s)	260, 450, 479, 651
Tru9I	TTAA	4 cut(s)	260, 450, 479, 651
TscAI	CASTG	1 cut(s)	200
TseI	GCWGC	2 cut(s)	20, 340
TspDTI	ATGAA	7 cut(s)	31, 90, 186, 219, 363, 719, 751
TspRI	CASTG	1 cut(s)	200
Vha464I	CTTAAG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	187, 601
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	2 cut(s)	543, 795
XceI	RCATGY	3 cut(s)	35, 376, 822
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	3 cut(s)	422, 566, 705
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.