RchiOBHm_Chr1g0314951

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001234
Physical Location & Seq
Reverse (-)
2251285 .. 2252083
799 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGGTGGACAAGGCCGGAAAAGGAAGAAAGGAGGAGGTCGTTACCAGGGAGTACACCATCAATCTCCACAAGCGCTTGCATGGATGCACCTTTAAAAAGAAGGCTCCAAACGCCATAAAGGAAATCAGGAAGTTTGCTCAAAAGGCCATGGCTACTACTGATGTCAGAGTGGATGTTAAACTCAACAAGCACATTTGGAGCCGTGGGATTCGAAGTGTGCCAAGAAGGGTTCGCGTCCGAATTGCACGAAAGAGAAACGATGAAGAAGATGCCAAGGAAGAGTTCTACTCCCTGGTTACTGTTACAGAGGTTCCACCAGAGGGATTGAAGGGTTTGTGTACCAAGGTGGTTGACGAAGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L31e

Protein Analysis

121

Amino Acids

13.99

Weight (kDa)

9.82

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L31e PF01198 12 - 93 2.7e-42 Ribosomal protein L31e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AfaI GTAC 2 cut(s) 53, 340
AfeI AGCGCT 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 2 cut(s) 44, 291
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
Aor51HI AGCGCT 1 cut(s) 74
AoxI GGCC 2 cut(s) 12, 144
AspLEI GCGC 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 211
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 2 cut(s) 46, 293
BfoI RGCGCY 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 46, 293
BmiI GGNNCC 3 cut(s) 105, 200, 312
BmrFI CCNGG 2 cut(s) 46, 293
BmsI GCATC 2 cut(s) 74, 259
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu14I TTCGAA 1 cut(s) 211
BsaJI CCNNGG 6 cut(s) 45, 147, 202, 273, 291, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 46, 293
BseDI CCNNGG 6 cut(s) 45, 147, 202, 273, 291, 342
BseGI GGATG 2 cut(s) 89, 178
BseLI CCNNNNNNNGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 14, 146
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 320
BsnI GGCC 2 cut(s) 14, 146
Bsp119I TTCGAA 1 cut(s) 211
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 2 cut(s) 14, 146
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 105, 200, 312
BspT104I TTCGAA 1 cut(s) 211
BssECI CCNNGG 6 cut(s) 45, 147, 202, 273, 291, 342
BssT1I CCWWGG 3 cut(s) 147, 273, 342
Bst2UI CCWGG 2 cut(s) 46, 293
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 273
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 77
BstDSI CCRYGG 2 cut(s) 147, 202
BstF5I GGATG 2 cut(s) 89, 178
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 110, 143
BstNI CCWGG 2 cut(s) 46, 293
BstSCI CCNGG 2 cut(s) 44, 291
BstUI CGCG 1 cut(s) 234
BsuRI GGCC 2 cut(s) 14, 146
BtgI CCRYGG 2 cut(s) 147, 202
BtsCI GGATG 2 cut(s) 89, 178
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 75
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 52, 339
CviAII CATG 2 cut(s) 80, 148
CviJI RGCY 5 cut(s) 14, 104, 146, 152, 201
CviKI_1 RGCY 5 cut(s) 14, 104, 146, 152, 201
CviQI GTAC 2 cut(s) 52, 339
DraI TTTAAA 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 3 cut(s) 147, 273, 342
Eco47III AGCGCT 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 44, 291
EcoT14I CCWWGG 3 cut(s) 147, 273, 342
ErhI CCWWGG 3 cut(s) 147, 273, 342
FaeI CATG 2 cut(s) 83, 151
FaiI YATR 3 cut(s) 81, 116, 149
FatI CATG 2 cut(s) 79, 147
FokI GGATG 2 cut(s) 96, 185
GlaI GCGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 76
HaeIII GGCC 2 cut(s) 14, 146
HapII CCGG 1 cut(s) 15
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 83, 151
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 15
Hpy166II GTNNAC 4 cut(s) 7, 54, 339, 352
Hpy188I TCNGA 2 cut(s) 167, 239
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 4 cut(s) 7, 54, 339, 352
HpyAV CCTTC 3 cut(s) 94, 219, 322
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 79, 87, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 143
Hsp92II CATG 2 cut(s) 83, 151
HspAI GCGC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 109, 198
LpnPI CCDG 7 cut(s) 28, 31, 58, 112, 278, 305, 330
LweI GCATC 2 cut(s) 74, 259
MaeIII GTNAC 3 cut(s) 40, 295, 301
MboII GAAGA 4 cut(s) 36, 275, 278, 290
MluCI AATT 1 cut(s) 240
MnlI CCTC 4 cut(s) 25, 28, 301, 313
MseI TTAA 2 cut(s) 93, 177
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 46, 293
MvaI CCWGG 2 cut(s) 46, 293
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 110, 143
NcoI CCATGG 1 cut(s) 147
NlaIII CATG 2 cut(s) 83, 151
NlaIV GGNNCC 3 cut(s) 105, 200, 312
NspV TTCGAA 1 cut(s) 211
PfeI GAWTC 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 44, 291
PspGI CCWGG 2 cut(s) 44, 291
PspN4I GGNNCC 3 cut(s) 105, 200, 312
RsaI GTAC 2 cut(s) 53, 340
RsaNI GTAC 2 cut(s) 52, 339
SaqAI TTAA 2 cut(s) 93, 177
ScrFI CCNGG 2 cut(s) 46, 293
SetI ASST 4 cut(s) 39, 92, 312, 348
SfaNI GCATC 2 cut(s) 74, 259
SfuI TTCGAA 1 cut(s) 211
Sse9I AATT 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 44, 291
StyI CCWWGG 3 cut(s) 147, 273, 342
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 240
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 2 cut(s) 93, 177
Tru9I TTAA 2 cut(s) 93, 177
TspDTI ATGAA 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.