RchiOBHm_Chr1g0328421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002857
Physical Location & Seq
Reverse (-)
17838067 .. 17839803
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGCTACAAAGCATTTATTTAGGTGTCCTGCGCGTCCATCTGATTCAGATTGTAGGCACCTTCATTGTTCTTGTGCACTTCGACTTTATATTTCTCTTCTTTGTCTCCCCTCTTCAGCTGAAGAAGTATCTTGGAGTCAAGAAGAAGAAAAGAAGCAAAAGAGGGATTGAAGCGCAAAATCAGCAAATCTGCCTGTGCAGATCAGTCAACTTCGACAGATCACTGAGACCATCTCACAATTATTCAGATTATGATCTTTATATTGATGGAAAGCCTTGGATGTCTAGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

97

Amino Acids

11.44

Weight (kDa)

9.83

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 33
AcuI CTGAAG 2 cut(s) 98, 140
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 109, 220
Alw44I GTGCAC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 33, 175
BaeGI GKGCMC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 3 cut(s) 45, 238, 260
BcoDI GTCTC 2 cut(s) 109, 220
BfaI CTAG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 285
BseJI GATNNNNATC 1 cut(s) 252
BseMII CTCAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 78
BsmAI GTCTC 2 cut(s) 109, 220
Bso31I GGTCTC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 200, 218, 253
BspCNI CTCAG 1 cut(s) 216
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 3 cut(s) 200, 218, 253
BssT1I CCWWGG 1 cut(s) 275
Bst6I CTCTTC 2 cut(s) 101, 117
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 1 cut(s) 33
BstHHI GCGC 2 cut(s) 33, 175
BstKTI GATC 3 cut(s) 203, 221, 256
BstMAI GTCTC 2 cut(s) 109, 220
BstMBI GATC 3 cut(s) 200, 218, 253
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 221
CfoI GCGC 2 cut(s) 33, 175
CseI GACGC 1 cut(s) 22
CviJI RGCY 2 cut(s) 118, 274
CviKI_1 RGCY 2 cut(s) 118, 274
DdeI CTNAG 1 cut(s) 224
DpnI GATC 3 cut(s) 202, 220, 255
DpnII GATC 3 cut(s) 200, 218, 253
Eam1104I CTCTTC 2 cut(s) 101, 117
EarI CTCTTC 2 cut(s) 101, 117
Eco130I CCWWGG 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 220
Eco57I CTGAAG 2 cut(s) 98, 140
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaiI YATR 3 cut(s) 89, 252, 261
FspBI CTAG 1 cut(s) 285
GlaI GCGC 2 cut(s) 32, 174
HgaI GACGC 1 cut(s) 22
HhaI GCGC 2 cut(s) 33, 175
Hin6I GCGC 2 cut(s) 31, 173
HinP1I GCGC 2 cut(s) 31, 173
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 43, 135
Hpy166II GTNNAC 2 cut(s) 76, 208
Hpy188I TCNGA 3 cut(s) 42, 48, 247
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 2 cut(s) 76, 208
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 76, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 224
HspAI GCGC 2 cut(s) 31, 173
Kzo9I GATC 3 cut(s) 200, 218, 253
LpnPI CCDG 2 cut(s) 41, 206
MaeI CTAG 1 cut(s) 285
MalI GATC 3 cut(s) 202, 220, 255
MboI GATC 3 cut(s) 200, 218, 253
MboII GAAGA 5 cut(s) 88, 104, 133, 154, 157
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 1 cut(s) 238
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 2 cut(s) 120, 155
MspA1I CMGCKG 1 cut(s) 118
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 3 cut(s) 200, 218, 253
NlaIV GGNNCC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 43
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 118
Sau3AI GATC 3 cut(s) 200, 218, 253
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 1 cut(s) 78
SetI ASST 3 cut(s) 25, 62, 120
SgeI CNNG 7 cut(s) 40, 44, 83, 143, 151, 205, 288
Sse9I AATT 1 cut(s) 238
SspMI CTAG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 275
TaqI TCGA 2 cut(s) 81, 213
TasI AATT 1 cut(s) 238
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 228
VneI GTGCAC 1 cut(s) 74
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.