Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001409

Physical Location & Seq

Genomic Coordinates Reverse (-)

24320022 .. 24323365

Gene Structure 3344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTGCACGTCCCGTCTTGCAAAGAGGGATGCTAAAAGATGTTGTGCAACCGTTATTGGATTATCTGTAACAGGGGCCCTTGATGCAATCTTGTCACACGAGCATTCAAAGGAGATCCGCCGCTATCTTTATAACCATCAGAACAAAGATGGAGGTTGGGGACTGCATATAGAAGGGCCAAGTACAATGTTTTGTACAGCTCTGTCCTATGTGAGTCTGAGATTGCTAGGAGAGGAGATGGACGGCGGTGATGGCGCCATGGAGAAGGCAAGAAAATGGATTCTTCACCGTGGAGGAGTTACCACCATCCCATCATGGGGAAAGATGTGGCTCTCAGTAAGCTTCAGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

117

Amino Acids

12.96

Weight (kDa)

9.02

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	31 - 113	7.7e-20	Squalene-hopene cyclase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001409)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10860 FvH4_7g10860 FvH4_7g10860
malus_domestica	MD17G1158900.v1.1 MD17G1160000.v1.1 MD17G1246000.v1.1 MD17G1246100.v1.1 MD17G1246500.v1.1 MD17G1246700.v1.1
prunus_persica	Prupe.1G002600_v2.0.a1 Prupe.1G002600_v2.0.a1 Prupe.7G043400_v2.0.a1
pyrus_communis	pycom16g19870 pycom16g24410
rosa_chinensis	RchiOBHm_Chr1g0332711 RchiOBHm_Chr2g0148781 RchiOBHm_Chr4g0385071 RchiOBHm_Chr4g0385101
rosa_laevigata	RLG00000010257
rosa_multiflora	Rmu_co8015556.1_g000001 Rmu_co8308753.1_g000001 Rmu_co8434809.1_g000001 Rmu_sc0000824.1_g000004 Rmu_sc0001548.1_g000031 Rmu_sc0001548.1_g000053 Rmu_sc0002070.1_g000040 Rmu_sc0002116.1_g000014 Rmu_sc0003929.1_g000004 Rmu_sc0008546.1_g000012 Rmu_sc0008678.1_g000005 Rmu_ssc0000158.1_g000036
rosa_roxburghii	Rroxscaffold_5G00333010 Rroxscaffold_5G00342310
rosa_rugosa	Rorug03G0113700 Rorug03G0225800 Rorug03G0298900
rosa_samantha	Rh1CG121300 Rh1DG132500 Rh2AG466900 Rh2CG453300 Rh2CG453700 Rh4AG002600 Rh4AG078200 Rh4AG078500 Rh4BG002100 Rh4BG073600 Rh4BG073800 Rh4BG075600 Rh4BG076300 Rh4DG002100 Rh4DG071700 Rh7BG219000
rosa_wichuraiana	Rw4G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	3 cut(s)	118, 121, 246
AclWI	GGATC	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	184, 196
AfiI	CCNNNNNNNGG	2 cut(s)	316, 317
AgsI	TTSAA	1 cut(s)	108
AjiI	CACGTC	1 cut(s)	9
AluBI	AGCT	2 cut(s)	200, 342
AluI	AGCT	2 cut(s)	200, 342
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	2 cut(s)	75, 176
ApaI	GGGCCC	1 cut(s)	79
ApaLI	GTGCAC	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	3 cut(s)	75, 76, 176
AsuHPI	GGTGA	2 cut(s)	260, 278
BaeGI	GKGCMC	2 cut(s)	8, 79
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	6 cut(s)	143, 144, 232, 245, 314, 319
BceAI	ACGGC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	3 cut(s)	75, 76, 176
BmiI	GGNNCC	3 cut(s)	76, 77, 256
BmsI	GCATC	2 cut(s)	19, 73
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	258, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 317
BseDI	CCNNGG	2 cut(s)	258, 289
BseGI	GGATG	2 cut(s)	34, 306
BseLI	CCNNNNNNNGG	2 cut(s)	316, 317
BseMII	CTCAG	2 cut(s)	209, 348
BseRI	GAGGAG	2 cut(s)	248, 309
BseSI	GKGCMC	2 cut(s)	8, 79
BshFI	GGCC	2 cut(s)	77, 178
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	316, 317
BsmFI	GGGAC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	77, 178
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	8, 79
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	118, 121, 246
BspANI	GGCC	2 cut(s)	77, 178
BspCNI	CTCAG	2 cut(s)	210, 347
BspLI	GGNNCC	3 cut(s)	76, 77, 256
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	258, 289
BssMI	GATC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	52, 290
BstACI	GRCGYC	1 cut(s)	255
BstAUI	TGTACA	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	218, 334
BstDSI	CCRYGG	2 cut(s)	258, 289
BstF5I	GGATG	2 cut(s)	34, 306
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 252
BstSLI	GKGCMC	2 cut(s)	8, 79
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	77, 178
BtgI	CCRYGG	2 cut(s)	258, 289
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	34, 306
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	75, 76, 176
Csp6I	GTAC	2 cut(s)	183, 195
CviAII	CATG	2 cut(s)	259, 315
CviJI	RGCY	5 cut(s)	77, 178, 200, 331, 342
CviKI_1	RGCY	5 cut(s)	77, 178, 200, 331, 342
CviQI	GTAC	2 cut(s)	183, 195
DdeI	CTNAG	2 cut(s)	218, 334
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	328
EcoO109I	RGGNCCY	2 cut(s)	75, 76
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	262, 318
FaiI	YATR	6 cut(s)	132, 168, 170, 210, 260, 316
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	2 cut(s)	258, 314
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	2 cut(s)	41, 293
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	121
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	77, 178
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	262, 318
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	2 cut(s)	214, 280
HphI	GGTGA	2 cut(s)	260, 278
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	141, 219
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	167, 259
HpyCH4III	ACNGT	2 cut(s)	52, 290
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	5 cut(s)	6, 20, 47, 86, 166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 252
HpyF3I	CTNAG	2 cut(s)	218, 334
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	262, 318
HspAI	GCGC	1 cut(s)	255
KasI	GGCGCC	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	1 cut(s)	57
LweI	GCATC	2 cut(s)	19, 73
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	3 cut(s)	67, 93, 298
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	275
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	8, 79
Mly113I	GGCGCC	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	18, 146, 226, 287
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	83, 252
NarI	GGCGCC	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	262, 318
NlaIV	GGNNCC	3 cut(s)	76, 77, 256
NmuCI	GTSAC	1 cut(s)	93
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	222
PluTI	GGCGCC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	76, 77, 256
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	75, 76, 176
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	2 cut(s)	184, 196
RsaNI	GTAC	2 cut(s)	183, 195
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	3 cut(s)	75, 76, 176
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	8, 79
SetI	ASST	5 cut(s)	11, 157, 202, 344, 353
SfaNI	GCATC	2 cut(s)	19, 73
SfoI	GGCGCC	1 cut(s)	256
SsiI	CCGC	3 cut(s)	118, 121, 246
SspDI	GGCGCC	1 cut(s)	254
SspMI	CTAG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	52, 290
TaiI	ACGT	1 cut(s)	11
TatI	WGTACW	2 cut(s)	182, 194
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	4
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.