RchiOBHm_Chr2g0099741

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001505
Physical Location & Seq
Reverse (-)
11869987 .. 11873939
3953 bp
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UTR
Exon/CDS
Intron
PRQ47445

Sequence Viewer

Length: 153 bp
ATGAATTGGGATTACTCTAATTCCTTGTCCGGTGCCATCGAAGCTTTGAGGGCTAGCACGCTCCGCCTTTTAGTGGTTGATGGAGCAAGGGCAGATGTCCACAATGTGAAGGATGCTATTTCTTCCACAGTTGATGTGATGCAGGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

50

Amino Acids

5.36

Weight (kDa)

4.82

Isoelectric Point (pI)

19.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QWRF PF04484 2 - 49 5.1e-15 QWRF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 64
AdeI CACNNNGTG 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 32
BccI CCATC 2 cut(s) 44, 74
BfaI CTAG 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 2 cut(s) 103, 129
BmtI GCTAGC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 73
BspACI CCGC 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 55, 59, 144
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 41, 50, 63
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 3 cut(s) 55, 59, 144
CviJI RGCY 2 cut(s) 44, 53
CviKI_1 RGCY 2 cut(s) 44, 53
DraIII CACNNNGTG 1 cut(s) 106
EciI GGCGGA 1 cut(s) 53
FokI GGATG 1 cut(s) 125
FspBI CTAG 1 cut(s) 54
HapII CCGG 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 42
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 50, 63
LmnI GCTCC 2 cut(s) 66, 83
LpnPI CCDG 2 cut(s) 43, 128
LweI GCATC 2 cut(s) 103, 129
MaeI CTAG 1 cut(s) 54
MboII GAAGA 1 cut(s) 114
MluCI AATT 2 cut(s) 4, 19
MnlI CCTC 1 cut(s) 42
MspI CCGG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 41, 50, 63
NheI GCTAGC 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 34
SetI ASST 1 cut(s) 46
SfaNI GCATC 2 cut(s) 103, 129
SgeI CNNG 5 cut(s) 37, 42, 66, 70, 99
Sse9I AATT 2 cut(s) 4, 19
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 39
TasI AATT 2 cut(s) 4, 19
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.