Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

24034936 .. 24037353

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGACCCGGTGTTTATCGGTTTCGTTTCAGGGCGAGTCATACTCCATCCAGGTGAGTAAAGAGAAGCGAGCGCTGTCTCCGACTGCGAGGAAAGGCACGCCAGAGCGAAGGAAGGCTTCGACGCCGGCGAGGAGGGATCAGAGAGAGAATTCCAGGCCGATAAAGAAACACCGGTGGCCGGAGAGGTTGAGGCTGGACACTTGTATGACCAGGAGCTTGGATTATACAGTGGAGAGGAAGAAAGTGAATGGATCTGGCTCCAATGTGAAAACTGATGGTACAATAAATGTCTTAACTGTGCTACCTATGGATTTTTTGGGCATGCTATCATGGTCACTTGAATTCGATAGATACGTTGATGATGATAACAGATGCGTGGGTTTAATATATCAGCGGCTAGTTGAGGAAATTTTCTCTAGTCAAATTCCCAGCATTCTTATCACTGCCAAAGGGTACCCAGGTATTGCCACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

159

Amino Acids

18.07

Weight (kDa)

9.85

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	453
AciI	CCGC	1 cut(s)	394
AclWI	GGATC	2 cut(s)	144, 259
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	4 cut(s)	148, 341, 408, 423
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	280, 455
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	4 cut(s)	48, 152, 209, 457
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	144, 259
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	2 cut(s)	155, 176
ApoI	RAATTY	4 cut(s)	148, 341, 408, 423
AsiGI	ACCGGT	1 cut(s)	171
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	64
BaeI	ACNNNNGTAYC	1 cut(s)	445
BanI	GGYRCC	1 cut(s)	453
BccI	CCATC	2 cut(s)	53, 269
BciT130I	CCWGG	4 cut(s)	50, 154, 211, 459
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	2 cut(s)	398, 417
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	5 cut(s)	7, 50, 154, 211, 459
BmiI	GGNNCC	2 cut(s)	259, 455
BmrFI	CCNGG	5 cut(s)	7, 50, 154, 211, 459
BmsI	GCATC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpuMI	CCSGG	1 cut(s)	7
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	457
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	2 cut(s)	124, 171
BseBI	CCWGG	4 cut(s)	50, 154, 211, 459
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	428
BshFI	GGCC	2 cut(s)	157, 178
BshNI	GGYRCC	1 cut(s)	453
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	4 cut(s)	7, 125, 172, 179
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	157, 178
Bsp143I	GATC	2 cut(s)	136, 251
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	2 cut(s)	157, 178
BspLI	GGNNCC	2 cut(s)	259, 455
BspPI	GGATC	2 cut(s)	144, 259
BspT107I	GGYRCC	1 cut(s)	453
BsrFI	RCCGGY	2 cut(s)	124, 171
BssAI	RCCGGY	2 cut(s)	124, 171
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	2 cut(s)	136, 251
BssNI	GRCGYC	1 cut(s)	122
Bst2UI	CCWGG	4 cut(s)	50, 154, 211, 459
Bst4CI	ACNGT	2 cut(s)	229, 298
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	69, 98, 126, 323
BstF5I	GGATG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	139, 254
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	136, 251
BstNI	CCWGG	4 cut(s)	50, 154, 211, 459
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	5 cut(s)	5, 48, 152, 209, 457
BstX2I	RGATCY	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	157, 178
BtsCI	GGATG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	234, 441
Cac8I	GCNNGC	4 cut(s)	69, 98, 126, 323
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	2 cut(s)	124, 171
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	279, 454
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	2 cut(s)	322, 330
CviJI	RGCY	7 cut(s)	116, 157, 178, 193, 216, 258, 397
CviKI_1	RGCY	7 cut(s)	116, 157, 178, 193, 216, 258, 397
CviQI	GTAC	2 cut(s)	279, 454
DpnI	GATC	2 cut(s)	138, 253
DpnII	GATC	2 cut(s)	136, 251
EaeI	YGGCCR	1 cut(s)	176
Eco47III	AGCGCT	1 cut(s)	72
EcoRI	GAATTC	2 cut(s)	148, 341
EcoRII	CCWGG	4 cut(s)	48, 152, 209, 457
FaeI	CATG	2 cut(s)	325, 333
FaiI	YATR	7 cut(s)	40, 206, 225, 308, 323, 331, 388
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FatI	CATG	2 cut(s)	321, 329
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	2 cut(s)	398, 417
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	395
GsaI	CCCAGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	157, 178
HapII	CCGG	4 cut(s)	7, 125, 172, 179
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	325, 333
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	4 cut(s)	7, 125, 172, 179
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	81, 141
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	102, 106
HpyCH4III	ACNGT	2 cut(s)	229, 298
HpyCH4IV	ACGT	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	325, 333
HspAI	GCGC	1 cut(s)	71
KpnI	GGTACC	1 cut(s)	457
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	136, 251
LmnI	GCTCC	2 cut(s)	213, 263
LweI	GCATC	1 cut(s)	362
MaeI	CTAG	2 cut(s)	398, 417
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	2 cut(s)	138, 253
MboI	GATC	2 cut(s)	136, 251
MboII	GAAGA	1 cut(s)	250
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	4 cut(s)	148, 341, 408, 423
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	7 cut(s)	81, 123, 126, 177, 183, 228, 397
MreI	CGCCGGCG	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	124
MseI	TTAA	2 cut(s)	293, 383
MslI	CAYNNNNRTG	2 cut(s)	50, 203
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	4 cut(s)	7, 125, 172, 179
MspR9I	CCNGG	5 cut(s)	7, 50, 154, 211, 459
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	4 cut(s)	50, 154, 211, 459
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	136, 251
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	325, 333
NlaIV	GGNNCC	2 cut(s)	259, 455
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 351
PctI	GAATGC	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	126
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	4 cut(s)	48, 152, 209, 457
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	4 cut(s)	48, 152, 209, 457
PspN4I	GGNNCC	2 cut(s)	259, 455
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	2 cut(s)	280, 455
RsaNI	GTAC	2 cut(s)	279, 454
RseI	CAYNNNNRTG	2 cut(s)	50, 203
SaqAI	TTAA	2 cut(s)	293, 383
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	2 cut(s)	136, 251
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	5 cut(s)	7, 50, 154, 211, 459
SetI	ASST	7 cut(s)	54, 188, 218, 307, 357, 463, 476
SfaNI	GCATC	1 cut(s)	362
SgrAI	CRCCGGYG	2 cut(s)	124, 171
SmiMI	CAYNNNNRTG	2 cut(s)	50, 203
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	4 cut(s)	148, 341, 408, 423
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	2 cut(s)	398, 417
StyD4I	CCNGG	5 cut(s)	5, 48, 152, 209, 457
TaaI	ACNGT	2 cut(s)	229, 298
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	119, 345
TasI	AATT	4 cut(s)	148, 341, 408, 423
TauI	GCSGC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	293, 383
Tru9I	TTAA	2 cut(s)	293, 383
TscAI	CASTG	2 cut(s)	234, 448
TseFI	GTSAC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	333
TspRI	CASTG	2 cut(s)	234, 448
XapI	RAATTY	4 cut(s)	148, 341, 408, 423
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	2 cut(s)	398, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.