Rh4AG120900

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001505
Physical Location & Seq
Forward (+)
26057747 .. 26066297
8551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG120900.1

Sequence Viewer

Length: 777 bp
ATGTGTACTGTTACTGCACCGTTGACAACTCAGGCAACTAGGACTGGTCCTGTGCTCCAGTTCGCTGAAGATAGGTTTCAATTGGGCGAGACAACTTTTCAGTTTCAGTCCTTTATTCCATCTCCTGTGGCACGGTCGTTGTTTATAGACGTGCAGTTTGGCAGGCCTAGGAAGGACAAGAGGTCTGTGGTCATCAAGGATGCCGGTTATAGGGCTTTCAGAGAGACAAAGCGAAGGAGCAAAAAATTTCCAATTCCAGTCGGATTCTCAAGCCAGCCTTCTCAGAACATCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTGGAGAGGAGGAGAACGGTCACTCCTCAACCTAATTCTTTAGATTTGAGGGCCAGGAATGGAGCTGCCGGCGGCGGTGAAATGTCAGCGGCTCAGAAGCTGTTGGTCACTTCGATGAGGAGTTTATCGGTTTCGTTTCAGGGCGAGTCGTACGCGCTTCAGGTGAGTAAAGCGAAGCGACCACCTTCTCCGATTGAGAGGAAAGGGACGCCGGAGCGAAGGAAGGCTTCAACGCAGGCGAGGTCGGATCAGAGCGAGAATTCCAGACTGATGGAGCAGTACCGGTGGCCGCCGAGGTTGAGGCCGGACATTTGTATGACCAGGAGCTTGGATTGTATGGTGGAGATGAAGAAATTGAATGGATCTGGCTCCAATGTGGTTAGGGCATTGCAAAATTCACTGGGGAATGATCTTGATGGGAGATTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

258

Amino Acids

28.96

Weight (kDa)

10.91

Isoelectric Point (pI)

67.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 500
AciI CCGC 4 cut(s) 417, 420, 434, 635
AclWI GGATC 2 cut(s) 600, 715
AcoI YGGCCR 1 cut(s) 632
AcsI RAATTY 3 cut(s) 245, 604, 739
AcuI CTGAAG 2 cut(s) 87, 488
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 3 cut(s) 7, 497, 626
AfiI CCNNNNNNNGG 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 627
AgsI TTSAA 4 cut(s) 80, 308, 576, 703
AhdI GACNNNNNGTC 1 cut(s) 181
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 2 cut(s) 398, 665
AloI GAACNNNNNNTCC 2 cut(s) 352, 384
AluBI AGCT 4 cut(s) 410, 445, 672, 774
AluI AGCT 4 cut(s) 410, 445, 672, 774
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 83, 218
AlwI GGATC 2 cut(s) 600, 715
AlwNI CAGNNNCTG 1 cut(s) 445
AoxI GGCC 4 cut(s) 164, 396, 632, 647
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 3 cut(s) 245, 604, 739
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsiGI ACCGGT 1 cut(s) 627
Asp700I GAANNNNTTC 1 cut(s) 312
AspA2I CCTAGG 1 cut(s) 167
AspLEI GCGC 1 cut(s) 502
AspS9I GGNCC 2 cut(s) 47, 396
AsuHPI GGTGA 2 cut(s) 434, 520
AvaII GGWCC 1 cut(s) 47
AvrII CCTAGG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 397
BccI CCATC 3 cut(s) 127, 610, 755
BciT130I CCWGG 2 cut(s) 400, 667
BcoDI GTCTC 2 cut(s) 83, 218
BfaI CTAG 2 cut(s) 39, 168
BisI GCNGC 4 cut(s) 411, 418, 435, 635
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 4 cut(s) 412, 419, 436, 636
Bme1390I CCNGG 2 cut(s) 400, 667
Bme18I GGWCC 1 cut(s) 47
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 47, 396
BmiI GGNNCC 2 cut(s) 315, 715
BmrFI CCNGG 2 cut(s) 400, 667
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 755
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 167, 638
BsaWI WCCGGW 1 cut(s) 627
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 3 cut(s) 203, 413, 627
Bse1I ACTGG 4 cut(s) 49, 58, 257, 750
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 2 cut(s) 400, 667
BseDI CCNNGG 2 cut(s) 167, 638
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 3 cut(s) 44, 296, 452
BseNI ACTGG 4 cut(s) 49, 58, 257, 750
BseRI GAGGAG 4 cut(s) 360, 367, 370, 478
BseXI GCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 4 cut(s) 166, 398, 634, 649
BshTI ACCGGT 1 cut(s) 627
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 5 cut(s) 204, 414, 557, 628, 650
BsiWI CGTACG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 565
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 83, 218
BsmFI GGGAC 1 cut(s) 565
BsnI GGCC 4 cut(s) 166, 398, 634, 649
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 592, 707, 754
BspACI CCGC 4 cut(s) 417, 420, 434, 635
BspANI GGCC 4 cut(s) 166, 398, 634, 649
BspCNI CTCAG 3 cut(s) 43, 295, 451
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 2 cut(s) 315, 715
BspPI GGATC 2 cut(s) 600, 715
BsrDI GCAATG 1 cut(s) 731
BsrFI RCCGGY 3 cut(s) 203, 413, 627
BsrI ACTGG 4 cut(s) 49, 58, 257, 750
BssAI RCCGGY 3 cut(s) 203, 413, 627
BssECI CCNNGG 2 cut(s) 167, 638
BssMI GATC 3 cut(s) 592, 707, 754
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 400, 667
Bst4CI ACNGT 4 cut(s) 10, 21, 135, 364
Bst6I CTCTTC 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 554
BstC8I GCNNGC 4 cut(s) 164, 275, 415, 582
BstDEI CTNAG 3 cut(s) 30, 282, 438
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 500
BstHHI GCGC 1 cut(s) 502
BstKTI GATC 3 cut(s) 595, 710, 757
BstMAI GTCTC 2 cut(s) 83, 218
BstMBI GATC 3 cut(s) 592, 707, 754
BstMCI CGRYCG 1 cut(s) 137
BstNI CCWGG 2 cut(s) 400, 667
BstSCI CCNGG 2 cut(s) 398, 665
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 707
BstXI CCANNNNNNTGG 2 cut(s) 616, 673
BstYI RGATCY 1 cut(s) 707
BsuRI GGCC 4 cut(s) 166, 398, 634, 649
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 743
Cac8I GCNNGC 4 cut(s) 164, 275, 415, 582
CaiI CAGNNNCTG 1 cut(s) 445
CfoI GCGC 1 cut(s) 502
Cfr10I RCCGGY 3 cut(s) 203, 413, 627
Cfr13I GGNCC 2 cut(s) 47, 396
CseI GACGC 1 cut(s) 562
Csp6I GTAC 3 cut(s) 6, 496, 625
CspAI ACCGGT 1 cut(s) 627
CviQI GTAC 3 cut(s) 6, 496, 625
DdeI CTNAG 3 cut(s) 30, 282, 438
DpnI GATC 3 cut(s) 594, 709, 756
DpnII GATC 3 cut(s) 592, 707, 754
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 632
Eam1104I CTCTTC 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 167
Eco147I AGGCCT 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 87, 488
EcoRI GAATTC 1 cut(s) 604
EcoRII CCWGG 2 cut(s) 398, 665
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaiI YATR 4 cut(s) 146, 210, 662, 683
FalI AAGNNNNNCTT 4 cut(s) 262, 294, 556, 588
FaqI GGGAC 1 cut(s) 565
Fnu4HI GCNGC 4 cut(s) 411, 418, 435, 635
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 4 cut(s) 411, 418, 435, 635
FspBI CTAG 2 cut(s) 39, 168
GlaI GCGC 1 cut(s) 501
GluI GCNGC 4 cut(s) 411, 418, 435, 635
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 4 cut(s) 166, 398, 634, 649
HapII CCGG 5 cut(s) 204, 414, 557, 628, 650
HgaI GACGC 1 cut(s) 562
HhaI GCGC 1 cut(s) 502
Hin1I GRCGYC 1 cut(s) 554
Hin6I GCGC 1 cut(s) 500
HinP1I GCGC 1 cut(s) 500
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 2 cut(s) 264, 491
HpaII CCGG 5 cut(s) 204, 414, 557, 628, 650
HphI GGTGA 2 cut(s) 434, 520
Hpy166II GTNNAC 2 cut(s) 6, 24
Hpy188I TCNGA 7 cut(s) 221, 263, 285, 441, 537, 592, 597
Hpy188III TCNNGA 2 cut(s) 609, 758
Hpy8I GTNNAC 2 cut(s) 6, 24
HpyAV CCTTC 7 cut(s) 166, 228, 288, 337, 540, 558, 562
HpyCH4III ACNGT 4 cut(s) 10, 21, 135, 364
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 17, 154, 325, 736
HpyF3I CTNAG 3 cut(s) 30, 282, 438
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 554
HspAI GCGC 1 cut(s) 500
KroI GCCGGC 1 cut(s) 413
KroNI GCCGGC 1 cut(s) 415
Kzo9I GATC 3 cut(s) 592, 707, 754
LmnI GCTCC 7 cut(s) 60, 237, 407, 559, 619, 669, 719
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 39, 168
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 10, 364, 451
MalI GATC 3 cut(s) 594, 709, 756
MboI GATC 3 cut(s) 592, 707, 754
MboII GAAGA 3 cut(s) 80, 320, 706
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 707
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 7 cut(s) 80, 245, 252, 379, 604, 698, 739
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 2 cut(s) 241, 570
MroNI GCCGGC 1 cut(s) 413
MroXI GAANNNNTTC 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 458, 659
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 5 cut(s) 204, 414, 557, 628, 650
MspR9I CCNGG 2 cut(s) 400, 667
MunI CAATTG 1 cut(s) 80
MvaI CCWGG 2 cut(s) 400, 667
MvnI CGCG 1 cut(s) 500
NaeI GCCGGC 1 cut(s) 415
NdeII GATC 3 cut(s) 592, 707, 754
NgoMIV GCCGGC 1 cut(s) 413
NlaIV GGNNCC 2 cut(s) 315, 715
NmeAIII GCCGAG 1 cut(s) 663
NmuCI GTSAC 2 cut(s) 364, 451
PceI AGGCCT 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 415
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 264
Pfl23II CGTACG 1 cut(s) 495
PinAI ACCGGT 1 cut(s) 627
PkrI GCNGC 4 cut(s) 412, 419, 436, 636
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 398, 665
PspGI CCWGG 2 cut(s) 398, 665
PspLI CGTACG 1 cut(s) 495
PspN4I GGNNCC 2 cut(s) 315, 715
PspPI GGNCC 2 cut(s) 47, 396
PstNI CAGNNNCTG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 707
RsaI GTAC 3 cut(s) 7, 497, 626
RsaNI GTAC 3 cut(s) 6, 496, 625
RseI CAYNNNNRTG 2 cut(s) 458, 659
SatI GCNGC 4 cut(s) 411, 418, 435, 635
Sau3AI GATC 3 cut(s) 592, 707, 754
Sau96I GGNCC 2 cut(s) 47, 396
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 2 cut(s) 400, 667
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 2 cut(s) 458, 659
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 7 cut(s) 80, 245, 252, 379, 604, 698, 739
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 4 cut(s) 417, 420, 434, 635
SspMI CTAG 2 cut(s) 39, 168
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 2 cut(s) 398, 665
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 4 cut(s) 10, 21, 135, 364
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 298, 458
TasI AATT 7 cut(s) 80, 245, 252, 379, 604, 698, 739
TatI WGTACW 1 cut(s) 5
TauI GCSGC 3 cut(s) 420, 437, 637
TfiI GAWTC 1 cut(s) 264
TscAI CASTG 1 cut(s) 750
TseFI GTSAC 2 cut(s) 364, 451
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 2 cut(s) 364, 451
TspDTI ATGAA 1 cut(s) 707
TspRI CASTG 1 cut(s) 750
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 3 cut(s) 245, 604, 739
XmaJI CCTAGG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 2 cut(s) 39, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.