Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

26060687 .. 26061170

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG247600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCCTTCGCTCATCTCTACTCTGCCGTCGAAGCTGTCTTCAAAAGCAAAAAGTAGGGCATCTGTAGTTGCTCTGAATGTCGAGATTCGCCGGACCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTGAAGAGGAGGACAGCGGTCACTTGTCGACCTAATTCTTTGGATTTGAGGGCCCGGAATGGAGCTGCCGGCGGCTCAGAAGCTGTTGGTCACTTCGACGAGGACTTTATCGGTTTTGTTTCAAGGCTAGTTGTACTTGCTCCAGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

100

Amino Acids

10.88

Weight (kDa)

10.93

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	178
AciI	CCGC	2 cut(s)	167, 222
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	42, 113, 273
AluBI	AGCT	3 cut(s)	34, 215, 233
AluI	AGCT	3 cut(s)	34, 215, 233
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	201
ApaI	GGGCCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	117
AspS9I	GGNCC	3 cut(s)	93, 201, 202
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	216, 223
BlsI	GCNGC	2 cut(s)	217, 224
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	3 cut(s)	93, 201, 202
BmiI	GGNNCC	2 cut(s)	120, 203
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	68
BoxI	GACNNNNGTC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	91, 205, 219
BslI	CCNNNNNNNGG	1 cut(s)	97
BsnI	GGCC	1 cut(s)	203
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	167, 222
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	120, 203
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	96
Bst6I	CTCTTC	2 cut(s)	108, 149
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	93, 201, 202
Csp6I	GTAC	1 cut(s)	284
CviJI	RGCY	8 cut(s)	34, 101, 140, 203, 215, 225, 233, 277
CviKI_1	RGCY	8 cut(s)	34, 101, 140, 203, 215, 225, 233, 277
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	108, 149
EarI	CTCTTC	2 cut(s)	108, 149
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	216, 223
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	216, 223
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	2 cut(s)	216, 223
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	3 cut(s)	91, 205, 219
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	3 cut(s)	91, 205, 219
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	75, 229
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	2 cut(s)	31, 251
HpyAV	CCTTC	2 cut(s)	15, 142
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	212, 295
LpnPI	CCDG	3 cut(s)	104, 218, 232
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	2 cut(s)	169, 239
MboII	GAAGA	3 cut(s)	30, 125, 166
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	184
MnlI	CCTC	5 cut(s)	109, 150, 153, 192, 244
MroNI	GCCGGC	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	3 cut(s)	91, 205, 219
MspR9I	CCNGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	31
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	1 cut(s)	205
NgoMIV	GCCGGC	1 cut(s)	218
NlaIV	GGNNCC	2 cut(s)	120, 203
NmuCI	GTSAC	2 cut(s)	169, 239
PdiI	GCCGGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	217, 224
PshAI	GACNNNNGTC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	120, 203
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	3 cut(s)	93, 201, 202
PstNI	CAGNNNCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SalI	GTCGAC	1 cut(s)	177
SatI	GCNGC	2 cut(s)	216, 223
Sau96I	GGNCC	3 cut(s)	93, 201, 202
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	6 cut(s)	36, 120, 153, 184, 217, 235
SfaNI	GCATC	1 cut(s)	68
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	93
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	2 cut(s)	167, 222
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	96
TaqI	TCGA	5 cut(s)	29, 81, 103, 178, 246
TasI	AATT	1 cut(s)	184
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	85
TseFI	GTSAC	2 cut(s)	169, 239
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	2 cut(s)	169, 239
VpaK11BI	GGWCC	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.