Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

26020308 .. 26022536

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTAAAGCTCAAATTTTCTCTCTCTTGTTCTTGGCTATTTAGGAGAGAGACAAAGGGAAGGAGCCAAAAATTTCCAATTCCAGTTGGATTCTCAAGCCAACCTTCTCAGAACATCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTGGAGAGGAGGAGAACGGTCACTCCTCGACCTAATTCTTTGGATTTGAGGGCCGGGAATGGAGCTGCCGGCGGCGGTGAAATGTCGGCGACTCAGAAGTTGTTGGTCACTTCGACGAGGAGTTTATCGGTTTCGTTTCAGGGCGAGTCGTACGTGCTCCAGGTGAGTAAAGCGAAGCGATTGCCGTCTCCGACTGCGAGGAAAGGCACGCCGGAGCTAAGGAAGGCTTCGACGCAGGCGAGGCAGGATCAGAGCGAGAATTCCAGATTGATGGAGCAGTACCGGTGGCCGCCGAGGTTGAGGCCAGACACTTGTATGACCAGGAGCTTGGATTGTACGGTGGAGATGAAGAAATTGAATGGATCTGGCTCCAATGTGGTTAGGGCATTGCAAAATTCACTGGGGAATGATCTTGATGGGAGATTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

200

Amino Acids

22.33

Weight (kDa)

10.94

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	243, 246, 461
AclWI	GGATC	2 cut(s)	426, 541
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	4 cut(s)	14, 71, 430, 565
AfaI	GTAC	3 cut(s)	323, 452, 508
AgeI	ACCGGT	1 cut(s)	453
AgsI	TTSAA	2 cut(s)	134, 529
AjnI	CCWGG	2 cut(s)	330, 491
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	5 cut(s)	10, 236, 388, 498, 600
AluI	AGCT	5 cut(s)	10, 236, 388, 498, 600
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	44, 363
AlwI	GGATC	2 cut(s)	426, 541
AoxI	GGCC	3 cut(s)	222, 458, 473
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	4 cut(s)	14, 71, 430, 565
AsiGI	ACCGGT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	260, 346
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	436, 581
BceAI	ACGGC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	2 cut(s)	332, 493
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	44, 363
BisI	GCNGC	3 cut(s)	237, 244, 461
BlsI	GCNGC	3 cut(s)	238, 245, 462
Bme1390I	CCNGG	3 cut(s)	226, 332, 493
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	3 cut(s)	65, 141, 541
BmrFI	CCNGG	3 cut(s)	226, 332, 493
BmrI	ACTGGG	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	581
BpmI	CTGGAG	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bse118I	RCCGGY	2 cut(s)	239, 453
Bse1I	ACTGG	2 cut(s)	83, 576
Bse3DI	GCAATG	1 cut(s)	557
BseBI	CCWGG	2 cut(s)	332, 493
BseDI	CCNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	557
BseMII	CTCAG	2 cut(s)	122, 278
BseNI	ACTGG	2 cut(s)	83, 576
BseRI	GAGGAG	4 cut(s)	186, 193, 196, 304
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	3 cut(s)	224, 460, 475
BshTI	ACCGGT	1 cut(s)	453
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	4 cut(s)	225, 240, 383, 454
BsiWI	CGTACG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	44, 363
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	224, 460, 475
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	418, 533, 580
BspACI	CCGC	3 cut(s)	243, 246, 461
BspANI	GGCC	3 cut(s)	224, 460, 475
BspCNI	CTCAG	2 cut(s)	121, 277
BspLI	GGNNCC	3 cut(s)	65, 141, 541
BspPI	GGATC	2 cut(s)	426, 541
BsrDI	GCAATG	1 cut(s)	557
BsrFI	RCCGGY	2 cut(s)	239, 453
BsrI	ACTGG	2 cut(s)	83, 576
BssAI	RCCGGY	2 cut(s)	239, 453
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	3 cut(s)	418, 533, 580
Bst2UI	CCWGG	2 cut(s)	332, 493
Bst4CI	ACNGT	2 cut(s)	190, 511
Bst6I	CTCTTC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	241, 380, 408
BstDEI	CTNAG	3 cut(s)	108, 264, 389
BstKTI	GATC	3 cut(s)	421, 536, 583
BstMAI	GTCTC	2 cut(s)	44, 363
BstMBI	GATC	3 cut(s)	418, 533, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	2 cut(s)	332, 493
BstSCI	CCNGG	3 cut(s)	224, 330, 491
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	2 cut(s)	442, 499
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	3 cut(s)	224, 460, 475
BtsIMutI	CAGTG	1 cut(s)	569
Cac8I	GCNNGC	3 cut(s)	241, 380, 408
Cfr10I	RCCGGY	2 cut(s)	239, 453
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	322, 451, 507
CspAI	ACCGGT	1 cut(s)	453
CviQI	GTAC	3 cut(s)	322, 451, 507
DdeI	CTNAG	3 cut(s)	108, 264, 389
DpnI	GATC	3 cut(s)	420, 535, 582
DpnII	GATC	3 cut(s)	418, 533, 580
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	330, 491
Esp3I	CGTCTC	1 cut(s)	363
FaiI	YATR	1 cut(s)	488
FalI	AAGNNNNNCTT	4 cut(s)	88, 120, 382, 414
Fnu4HI	GCNGC	3 cut(s)	237, 244, 461
Fsp4HI	GCNGC	3 cut(s)	237, 244, 461
GluI	GCNGC	3 cut(s)	237, 244, 461
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	224, 460, 475
HapII	CCGG	4 cut(s)	225, 240, 383, 454
HgaI	GACGC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	90, 262, 317
HpaII	CCGG	4 cut(s)	225, 240, 383, 454
HphI	GGTGA	2 cut(s)	260, 346
Hpy188I	TCNGA	4 cut(s)	111, 267, 363, 423
Hpy188III	TCNNGA	2 cut(s)	435, 584
Hpy99I	CGWCG	2 cut(s)	289, 406
HpyAV	CCTTC	4 cut(s)	54, 114, 163, 388
HpyCH4III	ACNGT	2 cut(s)	190, 511
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	2 cut(s)	151, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	3 cut(s)	108, 264, 389
HpySE526I	ACGT	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	418, 533, 580
LmnI	GCTCC	7 cut(s)	63, 233, 333, 385, 445, 495, 545
Lsp1109I	GCAGC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	190, 277
MalI	GATC	3 cut(s)	420, 535, 582
MboI	GATC	3 cut(s)	418, 533, 580
MboII	GAAGA	2 cut(s)	146, 532
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	7 cut(s)	14, 71, 78, 205, 430, 524, 565
MlyI	GAGTC	2 cut(s)	256, 326
MmeI	TCCRAC	2 cut(s)	67, 386
MroNI	GCCGGC	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	4 cut(s)	225, 240, 383, 454
MspR9I	CCNGG	3 cut(s)	226, 332, 493
MvaI	CCWGG	2 cut(s)	332, 493
MwoI	GCNNNNNNNGC	1 cut(s)	412
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	418, 533, 580
NgoMIV	GCCGGC	1 cut(s)	239
NlaIV	GGNNCC	3 cut(s)	65, 141, 541
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	2 cut(s)	190, 277
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	90
Pfl23II	CGTACG	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	3 cut(s)	238, 245, 462
PleI	GAGTC	2 cut(s)	256, 325
PpsI	GAGTC	2 cut(s)	256, 325
Ppu21I	YACGTR	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	330, 491
PspGI	CCWGG	2 cut(s)	330, 491
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	65, 141, 541
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	3 cut(s)	323, 452, 508
RsaNI	GTAC	3 cut(s)	322, 451, 507
RseI	CAYNNNNRTG	1 cut(s)	485
SatI	GCNGC	3 cut(s)	237, 244, 461
Sau3AI	GATC	3 cut(s)	418, 533, 580
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	256, 326
ScrFI	CCNGG	3 cut(s)	226, 332, 493
SduI	GDGCHC	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	7 cut(s)	14, 71, 78, 205, 430, 524, 565
SsiI	CCGC	3 cut(s)	243, 246, 461
StyD4I	CCNGG	3 cut(s)	224, 330, 491
TaaI	ACNGT	2 cut(s)	190, 511
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	4 cut(s)	124, 199, 284, 401
TasI	AATT	7 cut(s)	14, 71, 78, 205, 430, 524, 565
TauI	GCSGC	2 cut(s)	246, 463
TfiI	GAWTC	1 cut(s)	90
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	2 cut(s)	190, 277
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	190, 277
TspDTI	ATGAA	1 cut(s)	533
TspRI	CASTG	1 cut(s)	576
XapI	RAATTY	4 cut(s)	14, 71, 430, 565
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.