Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004761.1

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Forward (+)

54334 .. 54778

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004761.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgttggttatggaccgggattactctaattccttgtccggtgccatcgaagctttgagggctagcacactccgccttctagtggttgatggagcaagggcagatgtccacaatgtgaaggatgctatttcttccgcagttgatgtgatgcaggcaatggcatcatcaatatgcttattattatcgaaggtgatttttctcaaactttatggtactggccaagtcaattgccaagtcgctgtcaattacatgtcattggataggccacgttgcatgttactaatcaagtcactgcctatgtcactagccaacaacgtaactggccagcccaggtccctaattagtgagggtactggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

119

Amino Acids

12.77

Weight (kDa)

8.55

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	2 cut(s)	73, 135
AcoI	YGGCCR	2 cut(s)	217, 322
AdeI	CACNNNGTG	1 cut(s)	115
AfaI	GTAC	2 cut(s)	214, 352
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AoxI	GGCC	3 cut(s)	217, 263, 322
AspS9I	GGNCC	2 cut(s)	13, 333
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	202
AsuNHI	GCTAGC	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	13, 333
BalI	TGGCCA	2 cut(s)	219, 324
BanI	GGYRCC	1 cut(s)	41
BccI	CCATC	2 cut(s)	53, 83
BciT130I	CCWGG	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	17
BfaI	CTAG	3 cut(s)	63, 80, 305
Bme1390I	CCNGG	2 cut(s)	17, 331
Bme18I	GGWCC	2 cut(s)	13, 333
BmgT120I	GGNCC	2 cut(s)	13, 333
BmiI	GGNNCC	2 cut(s)	43, 335
BmrFI	CCNGG	2 cut(s)	17, 331
BmsI	GCATC	3 cut(s)	112, 138, 170
BmtI	GCTAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	220, 325, 358
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	3 cut(s)	220, 325, 358
BshFI	GGCC	3 cut(s)	219, 265, 324
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	16, 39
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	219, 265, 324
BspACI	CCGC	2 cut(s)	73, 135
BspANI	GGCC	3 cut(s)	219, 265, 324
BspLI	GGNNCC	2 cut(s)	43, 335
BspOI	GCTAGC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	220, 325, 358
BssECI	CCNNGG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	64, 153, 326
BstF5I	GGATG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 59, 72
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	2 cut(s)	253, 277
BstSCI	CCNGG	2 cut(s)	15, 329
BsuRI	GGCC	3 cut(s)	219, 265, 324
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	3 cut(s)	64, 153, 326
Cfr13I	GGNCC	2 cut(s)	13, 333
Csp6I	GTAC	2 cut(s)	213, 351
CviAII	CATG	2 cut(s)	250, 274
CviJI	RGCY	8 cut(s)	53, 62, 219, 265, 308, 324, 328, 357
CviKI_1	RGCY	8 cut(s)	53, 62, 219, 265, 308, 324, 328, 357
CviQI	GTAC	2 cut(s)	213, 351
DraIII	CACNNNGTG	1 cut(s)	115
EaeI	YGGCCR	2 cut(s)	217, 322
EciI	GGCGGA	1 cut(s)	62
Eco47I	GGWCC	2 cut(s)	13, 333
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	329
FaeI	CATG	2 cut(s)	253, 277
FaiI	YATR	6 cut(s)	11, 172, 210, 251, 275, 299
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	249, 273
FokI	GGATG	1 cut(s)	134
FspBI	CTAG	3 cut(s)	63, 80, 305
HaeIII	GGCC	3 cut(s)	219, 265, 324
HapII	CCGG	2 cut(s)	16, 39
Hin1II	CATG	2 cut(s)	253, 277
HindIII	AAGCTT	1 cut(s)	51
HpaII	CCGG	2 cut(s)	16, 39
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	86, 112, 181
HpyCH4IV	ACGT	2 cut(s)	268, 315
HpyCH4V	TGCA	2 cut(s)	151, 273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 59, 72
HpySE526I	ACGT	2 cut(s)	268, 315
Hsp92II	CATG	2 cut(s)	253, 277
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	9 cut(s)	29, 52, 137, 201, 306, 316, 338, 339, 343
LweI	GCATC	3 cut(s)	112, 138, 170
MaeI	CTAG	3 cut(s)	63, 80, 305
MaeII	ACGT	2 cut(s)	268, 315
MaeIII	GTNAC	4 cut(s)	276, 288, 300, 316
MboII	GAAGA	1 cut(s)	123
MfeI	CAATTG	1 cut(s)	226
MlsI	TGGCCA	2 cut(s)	219, 324
MluCI	AATT	4 cut(s)	28, 226, 244, 339
MluNI	TGGCCA	2 cut(s)	219, 324
MnlI	CCTC	2 cut(s)	51, 340
Mox20I	TGGCCA	2 cut(s)	219, 324
MscI	TGGCCA	2 cut(s)	219, 324
MslI	CAYNNNNRTG	1 cut(s)	169
Msp20I	TGGCCA	2 cut(s)	219, 324
MspI	CCGG	2 cut(s)	16, 39
MspR9I	CCNGG	2 cut(s)	17, 331
MunI	CAATTG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	50, 59, 72
NciI	CCSGG	1 cut(s)	17
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	253, 277
NlaIV	GGNNCC	2 cut(s)	43, 335
NmuCI	GTSAC	2 cut(s)	288, 300
NspI	RCATGY	2 cut(s)	253, 277
PciI	ACATGT	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	333
PscI	ACATGT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	43, 335
PspPI	GGNCC	2 cut(s)	13, 333
PspPPI	RGGWCCY	1 cut(s)	333
RsaI	GTAC	2 cut(s)	214, 352
RsaNI	GTAC	2 cut(s)	213, 351
RseI	CAYNNNNRTG	1 cut(s)	169
Sau96I	GGNCC	2 cut(s)	13, 333
ScrFI	CCNGG	2 cut(s)	17, 331
SetI	ASST	5 cut(s)	55, 192, 271, 318, 335
SfaNI	GCATC	3 cut(s)	112, 138, 170
SinI	GGWCC	2 cut(s)	13, 333
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	4 cut(s)	28, 226, 244, 339
SsiI	CCGC	2 cut(s)	73, 135
SspMI	CTAG	3 cut(s)	63, 80, 305
StyD4I	CCNGG	2 cut(s)	15, 329
TaiI	ACGT	2 cut(s)	271, 318
TaqI	TCGA	2 cut(s)	48, 185
TasI	AATT	4 cut(s)	28, 226, 244, 339
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	2 cut(s)	288, 300
Tsp45I	GTSAC	2 cut(s)	288, 300
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	13, 333
XceI	RCATGY	2 cut(s)	253, 277
XspI	CTAG	3 cut(s)	63, 80, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.