Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000546.1

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

363445 .. 364901

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000546.1_g000079.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgagaaggagattatggagttggtttgaaacagagagcgttgcaaaggacagggaagaaggaatagacgtggagctggttttgagaacatatcatgtcagattctcaagccagccttctcagaacatcaaggctcgattgcttgaagaggttcccaagttgcagagattggctgtaaagaaggtggagaggaggagaagggtcactcctcgacctaattctttagatttgagggccgggaatggagctgccggcggcggtgaaatgtcagcggctcagaagctgttggtcacttcgatgaggagtttattggttttgtttcagggcgagtcgtacgtgctccaggtgagtaaagcgaagcgaccacagtctccgattgaaaggaaagggacgacggagcgaaggaaggcttcgacgcaggcgaggccagatcagagcgagaattctagactaatggagcagtaccggtggccgccgaggttgaggccggacacttatatgaccaggagcttggattgtacggtggagatgaagaaattgaatggatctggctccaatgtggttagggcattgcaaaattcactagggaatgatcttgatgggagattgagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

204

Amino Acids

23.32

Weight (kDa)

10.62

Isoelectric Point (pI)

70.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	255, 258, 272, 473
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	2 cut(s)	442, 577
AfaI	GTAC	3 cut(s)	335, 464, 520
AgeI	ACCGGT	1 cut(s)	465
AgsI	TTSAA	4 cut(s)	29, 146, 380, 541
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	342, 503
AluBI	AGCT	5 cut(s)	76, 248, 283, 510, 612
AluI	AGCT	5 cut(s)	76, 248, 283, 510, 612
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	553
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	4 cut(s)	234, 425, 470, 485
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	442, 577
AsiGI	ACCGGT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	272, 358
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	593
BciT130I	CCWGG	2 cut(s)	344, 505
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	2 cut(s)	447, 584
BisI	GCNGC	4 cut(s)	249, 256, 273, 473
BlsI	GCNGC	4 cut(s)	250, 257, 274, 474
Bme1390I	CCNGG	3 cut(s)	238, 344, 505
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	153, 553
BmrFI	CCNGG	3 cut(s)	238, 344, 505
BoxI	GACNNNNGTC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	465
Bse118I	RCCGGY	2 cut(s)	251, 465
Bse3DI	GCAATG	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	344, 505
BseDI	CCNNGG	1 cut(s)	476
BseMI	GCAATG	1 cut(s)	569
BseMII	CTCAG	2 cut(s)	134, 290
BseRI	GAGGAG	4 cut(s)	198, 205, 208, 316
BseXI	GCAGC	1 cut(s)	235
BshFI	GGCC	4 cut(s)	236, 427, 472, 487
BshTI	ACCGGT	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	237, 252, 466, 488
BsiWI	CGTACG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	4 cut(s)	236, 427, 472, 487
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	430, 545, 592
BspACI	CCGC	4 cut(s)	255, 258, 272, 473
BspANI	GGCC	4 cut(s)	236, 427, 472, 487
BspCNI	CTCAG	2 cut(s)	133, 289
BspLI	GGNNCC	2 cut(s)	153, 553
BspPI	GGATC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	569
BsrFI	RCCGGY	2 cut(s)	251, 465
BssAI	RCCGGY	2 cut(s)	251, 465
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	3 cut(s)	430, 545, 592
Bst2UI	CCWGG	2 cut(s)	344, 505
Bst4CI	ACNGT	2 cut(s)	369, 523
Bst6I	CTCTTC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	113, 253, 420
BstDEI	CTNAG	2 cut(s)	120, 276
BstKTI	GATC	3 cut(s)	433, 548, 595
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	430, 545, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNI	CCWGG	2 cut(s)	344, 505
BstPAI	GACNNNNGTC	1 cut(s)	367
BstSCI	CCNGG	3 cut(s)	236, 342, 503
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	545
BsuRI	GGCC	4 cut(s)	236, 427, 472, 487
BtrI	CACGTC	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	113, 253, 420
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr10I	RCCGGY	2 cut(s)	251, 465
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	334, 463, 519
CspAI	ACCGGT	1 cut(s)	465
CviAII	CATG	1 cut(s)	95
CviQI	GTAC	3 cut(s)	334, 463, 519
DdeI	CTNAG	2 cut(s)	120, 276
DpnI	GATC	3 cut(s)	432, 547, 594
DpnII	GATC	3 cut(s)	430, 545, 592
EaeI	YGGCCR	1 cut(s)	470
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	342, 503
FaeI	CATG	1 cut(s)	98
FaiI	YATR	5 cut(s)	16, 91, 96, 498, 500
FalI	AAGNNNNNCTT	4 cut(s)	100, 132, 394, 426
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	4 cut(s)	249, 256, 273, 473
Fsp4HI	GCNGC	4 cut(s)	249, 256, 273, 473
FspBI	CTAG	2 cut(s)	447, 584
GluI	GCNGC	4 cut(s)	249, 256, 273, 473
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	236, 427, 472, 487
HapII	CCGG	4 cut(s)	237, 252, 466, 488
HgaI	GACGC	1 cut(s)	424
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	2 cut(s)	102, 329
HpaII	CCGG	4 cut(s)	237, 252, 466, 488
HphI	GGTGA	2 cut(s)	272, 358
Hpy188I	TCNGA	5 cut(s)	101, 123, 279, 375, 435
Hpy188III	TCNNGA	2 cut(s)	447, 596
Hpy99I	CGWCG	2 cut(s)	397, 418
HpyAV	CCTTC	6 cut(s)	53, 126, 175, 192, 396, 400
HpyCH4III	ACNGT	2 cut(s)	369, 523
HpyCH4IV	ACGT	2 cut(s)	69, 336
HpyCH4V	TGCA	3 cut(s)	44, 163, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	2 cut(s)	120, 276
HpySE526I	ACGT	2 cut(s)	69, 336
Hsp92II	CATG	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	430, 545, 592
LmnI	GCTCC	7 cut(s)	73, 245, 345, 397, 457, 507, 557
Lsp1109I	GCAGC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	447, 584
MaeII	ACGT	2 cut(s)	69, 336
MaeIII	GTNAC	2 cut(s)	202, 289
MalI	GATC	3 cut(s)	432, 547, 594
MboI	GATC	3 cut(s)	430, 545, 592
MboII	GAAGA	3 cut(s)	68, 158, 544
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	4 cut(s)	217, 442, 536, 577
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	142, 183, 186, 219, 225, 294, 417, 471, 477
MroNI	GCCGGC	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	296, 497
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	4 cut(s)	237, 252, 466, 488
MspR9I	CCNGG	3 cut(s)	238, 344, 505
MvaI	CCWGG	2 cut(s)	344, 505
MwoI	GCNNNNNNNGC	1 cut(s)	424
NaeI	GCCGGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	3 cut(s)	430, 545, 592
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	2 cut(s)	153, 553
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	2 cut(s)	202, 289
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PdiI	GCCGGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	102
Pfl23II	CGTACG	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	250, 257, 274, 474
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	337
PshAI	GACNNNNGTC	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	342, 503
PspGI	CCWGG	2 cut(s)	342, 503
PspLI	CGTACG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	153, 553
PspPI	GGNCC	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	545
RsaI	GTAC	3 cut(s)	335, 464, 520
RsaNI	GTAC	3 cut(s)	334, 463, 519
RseI	CAYNNNNRTG	2 cut(s)	296, 497
SatI	GCNGC	4 cut(s)	249, 256, 273, 473
Sau3AI	GATC	3 cut(s)	430, 545, 592
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	3 cut(s)	238, 344, 505
SduI	GDGCHC	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	296, 497
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
Sse9I	AATT	4 cut(s)	217, 442, 536, 577
SsiI	CCGC	4 cut(s)	255, 258, 272, 473
SspMI	CTAG	2 cut(s)	447, 584
StyD4I	CCNGG	3 cut(s)	236, 342, 503
TaaI	ACNGT	2 cut(s)	369, 523
TaiI	ACGT	2 cut(s)	72, 339
TaqI	TCGA	4 cut(s)	136, 211, 296, 413
TasI	AATT	4 cut(s)	217, 442, 536, 577
TauI	GCSGC	3 cut(s)	258, 275, 475
TfiI	GAWTC	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	202, 289
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	202, 289
TspDTI	ATGAA	1 cut(s)	545
TspGWI	ACGGA	1 cut(s)	410
XapI	RAATTY	2 cut(s)	442, 577
XbaI	TCTAGA	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	2 cut(s)	447, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.