Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

40101638 .. 40102825

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG212300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTCACTCCTCGACCTAATTCTTTAGATTTGAGGGCCGGGAATGGAGCTGCCGGCGGCGGTGAAATGTCGGCGGCTCAGAAGCTGTTGGTCACTTCGACGAGGAGTTTATCGGTTTCGTTTCATGGCGAGTCGTACGCGCTCCAGGTGAGTAAAGCGAAGCGACCGCCGTCTCCGATTGCGAGGAAAGGGACGCCGGAGCGAAGGAAGGCTTCGACGCAGGCGAGGCCGGATCAGAGCGAGAATTCCAGACTGATGGAGCAGTACCGGTGGCCGCCGAGGTTGAGGCCGGACACTTTTATGACCAGGAGCTTGGATTGTACGGTGGAGATGAAGAAATTGAATGGATCTGGCTCCAATGTGGTTAGGGCATTGCAAAATTCACTGGGGAATGATCTTGATGGGAGATTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

138

Amino Acids

15.05

Weight (kDa)

10.66

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	140
AciI	CCGC	5 cut(s)	57, 60, 74, 167, 275
AclWI	GGATC	2 cut(s)	240, 355
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	244, 379
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	3 cut(s)	137, 266, 322
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	144, 305
AluBI	AGCT	4 cut(s)	50, 85, 312, 414
AluI	AGCT	4 cut(s)	50, 85, 312, 414
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	240, 355
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	4 cut(s)	36, 227, 272, 287
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	244, 379
AsiGI	ACCGGT	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	74, 160
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	250, 395
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	2 cut(s)	146, 307
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	177
BisI	GCNGC	4 cut(s)	51, 58, 75, 275
BlsI	GCNGC	4 cut(s)	52, 59, 76, 276
Bme1390I	CCNGG	3 cut(s)	40, 146, 307
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	3 cut(s)	40, 146, 307
BmrI	ACTGGG	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	395
BoxI	GACNNNNGTC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	267
Bse118I	RCCGGY	2 cut(s)	53, 267
Bse1I	ACTGG	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	146, 307
BseDI	CCNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	4 cut(s)	38, 229, 274, 289
BshTI	ACCGGT	1 cut(s)	267
BsiEI	CGRYCG	1 cut(s)	167
BsiSI	CCGG	6 cut(s)	39, 54, 197, 230, 268, 290
BsiWI	CGTACG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	38, 229, 274, 289
Bsp143I	GATC	3 cut(s)	232, 347, 394
BspACI	CCGC	5 cut(s)	57, 60, 74, 167, 275
BspANI	GGCC	4 cut(s)	38, 229, 274, 289
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	240, 355
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	53, 267
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	2 cut(s)	53, 267
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	3 cut(s)	232, 347, 394
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	2 cut(s)	146, 307
Bst4CI	ACNGT	1 cut(s)	325
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	55, 222
BstDEI	CTNAG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	235, 350, 397
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	232, 347, 394
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	146, 307
BstPAI	GACNNNNGTC	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	38, 144, 305
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	347
BstXI	CCANNNNNNTGG	2 cut(s)	256, 313
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	4 cut(s)	38, 229, 274, 289
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	2 cut(s)	55, 222
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	142
Cfr10I	RCCGGY	2 cut(s)	53, 267
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	2 cut(s)	202, 226
Csp6I	GTAC	3 cut(s)	136, 265, 321
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	1 cut(s)	125
CviQI	GTAC	3 cut(s)	136, 265, 321
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	234, 349, 396
DpnII	GATC	3 cut(s)	232, 347, 394
EaeI	YGGCCR	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	144, 305
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	128
FaiI	YATR	2 cut(s)	126, 302
FalI	AAGNNNNNCTT	2 cut(s)	196, 228
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	51, 58, 75, 275
Fsp4HI	GCNGC	4 cut(s)	51, 58, 75, 275
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	4 cut(s)	51, 58, 75, 275
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	38, 229, 274, 289
HapII	CCGG	6 cut(s)	39, 54, 197, 230, 268, 290
HgaI	GACGC	2 cut(s)	202, 226
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	6 cut(s)	39, 54, 197, 230, 268, 290
HphI	GGTGA	2 cut(s)	74, 160
Hpy188I	TCNGA	3 cut(s)	81, 177, 237
Hpy188III	TCNNGA	2 cut(s)	249, 398
Hpy99I	CGWCG	2 cut(s)	103, 220
HpyAV	CCTTC	2 cut(s)	198, 202
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	140
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	232, 347, 394
LmnI	GCTCC	6 cut(s)	47, 147, 199, 259, 309, 359
Lsp1109I	GCAGC	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	4, 91
MalI	GATC	3 cut(s)	234, 349, 396
MboI	GATC	3 cut(s)	232, 347, 394
MboII	GAAGA	1 cut(s)	346
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	4 cut(s)	19, 244, 338, 379
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	21, 27, 96, 177, 219, 273, 279
MroNI	GCCGGC	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	6 cut(s)	39, 54, 197, 230, 268, 290
MspR9I	CCNGG	3 cut(s)	40, 146, 307
MvaI	CCWGG	2 cut(s)	146, 307
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	226
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	232, 347, 394
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	4, 91
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	55
Pfl23II	CGTACG	1 cut(s)	135
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	52, 59, 76, 276
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PshAI	GACNNNNGTC	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	144, 305
PspGI	CCWGG	2 cut(s)	144, 305
PspLI	CGTACG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	3 cut(s)	137, 266, 322
RsaNI	GTAC	3 cut(s)	136, 265, 321
RseI	CAYNNNNRTG	1 cut(s)	299
SatI	GCNGC	4 cut(s)	51, 58, 75, 275
Sau3AI	GATC	3 cut(s)	232, 347, 394
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	40, 146, 307
SetI	ASST	7 cut(s)	19, 52, 87, 150, 284, 314, 416
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	4 cut(s)	19, 244, 338, 379
SsiI	CCGC	5 cut(s)	57, 60, 74, 167, 275
StyD4I	CCNGG	3 cut(s)	38, 144, 305
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	13, 98, 215
TasI	AATT	4 cut(s)	19, 244, 338, 379
TauI	GCSGC	3 cut(s)	60, 77, 277
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	2 cut(s)	4, 91
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	4, 91
TspDTI	ATGAA	2 cut(s)	113, 347
TspRI	CASTG	1 cut(s)	390
XapI	RAATTY	2 cut(s)	244, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.