Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010044.1

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Forward (+)

37149 .. 38766

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010044.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atggccatcgtcagaatccatgacctcagctcgctgaagcttctcaactacggctgcgctacgctttggactcgctggcgttcaaccacgttcgaccacgaatgtttcgggttaggttcgaattgcttgccgtcgacgatcagatgttttgccgacgagcttgtgagatctgaggtttgcaacggcgtcgtgtgggtttgggaaggggagagagagaggcaacggtgtcgtgtggaaacaaagggaaggagccaaaaatgtccaattccagtcgaattctcaagccaaccttctcagaacatcaaggctcgattgcttgaagaggttcccaagttgcagagattggctgtaaagaaggtggagaggaggagaacggtcactcctcaacctaattctttggatttgagggccgggaatggagctgctgacggcggtgaaatgtcggcagctcaaaagttgttggtcacttcgatgaggagtttatcggtttcgtttcaaggcgagtcatacgccctccaggtgagtaaagtgaagcgactgccgtctccaactgcgaggaaaggcacgccggagcgaaggaaggcttcgacgcaggcaaggtcggatcagagagagaattccagactaatggagcagtaccggtggccgccgaggttgaggctggacacttgtatgaccaggagcttggattgtacggtggagatgaagaaattgaatggatctggctccaatgtggttaggacattgcaaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

251

Amino Acids

28.44

Weight (kDa)

10.0

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AciI	CCGC	2 cut(s)	432, 647
AclWI	GGATC	2 cut(s)	612, 727
AcoI	YGGCCR	2 cut(s)	3, 644
AcsI	RAATTY	2 cut(s)	275, 616
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	638, 694
AgeI	ACCGGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	84, 320, 497, 715
AjnI	CCWGG	2 cut(s)	516, 677
AloI	GAACNNNNNNTCC	2 cut(s)	364, 396
AluBI	AGCT	6 cut(s)	30, 40, 160, 422, 449, 684
AluI	AGCT	6 cut(s)	30, 40, 160, 422, 449, 684
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	612, 727
AoxI	GGCC	3 cut(s)	3, 408, 644
ApeKI	GCWGC	3 cut(s)	54, 422, 446
ApoI	RAATTY	2 cut(s)	275, 616
AsiGI	ACCGGT	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	2 cut(s)	446, 532
AsuII	TTCGAA	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	41, 409, 458
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	5 cut(s)	67, 115, 199, 445, 526
BcgI	CGANNNNNNTGC	6 cut(s)	109, 143, 169, 203, 209, 243
BciT130I	CCWGG	2 cut(s)	518, 679
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	4 cut(s)	55, 423, 447, 647
BlsI	GCNGC	4 cut(s)	56, 424, 448, 648
Bme1390I	CCNGG	3 cut(s)	412, 518, 679
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	251, 327, 727
BmrFI	CCNGG	3 cut(s)	412, 518, 679
BoxI	GACNNNNGTC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	650
BsaWI	WCCGGW	1 cut(s)	639
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	743
BseBI	CCWGG	2 cut(s)	518, 679
BseDI	CCNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	3 cut(s)	40, 162, 308
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	4 cut(s)	372, 379, 382, 490
BseXI	GCAGC	3 cut(s)	41, 409, 458
BshFI	GGCC	3 cut(s)	5, 410, 646
BshTI	ACCGGT	1 cut(s)	639
BsiSI	CCGG	3 cut(s)	411, 569, 640
BsmAI	GTCTC	1 cut(s)	549
BsmBI	CGTCTC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	5, 410, 646
Bsp119I	TTCGAA	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	138, 167, 604, 719
BspACI	CCGC	2 cut(s)	432, 647
BspANI	GGCC	3 cut(s)	5, 410, 646
BspCNI	CTCAG	3 cut(s)	39, 163, 307
BspLI	GGNNCC	3 cut(s)	251, 327, 727
BspPI	GGATC	2 cut(s)	612, 727
BspT104I	TTCGAA	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	743
BsrFI	RCCGGY	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	4 cut(s)	138, 167, 604, 719
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	518, 679
Bst4CI	ACNGT	3 cut(s)	225, 376, 697
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	5 cut(s)	32, 77, 128, 566, 594
BstDEI	CTNAG	3 cut(s)	26, 171, 294
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	4 cut(s)	141, 170, 607, 722
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	4 cut(s)	138, 167, 604, 719
BstNI	CCWGG	2 cut(s)	518, 679
BstPAI	GACNNNNGTC	1 cut(s)	541
BstSCI	CCNGG	3 cut(s)	410, 516, 677
BstV1I	GCAGC	3 cut(s)	41, 409, 458
BstX2I	RGATCY	2 cut(s)	167, 719
BstXI	CCANNNNNNTGG	2 cut(s)	628, 685
BstYI	RGATCY	2 cut(s)	167, 719
BsuRI	GGCC	3 cut(s)	5, 410, 646
Cac8I	GCNNGC	5 cut(s)	32, 77, 128, 566, 594
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	2 cut(s)	175, 598
Csp6I	GTAC	2 cut(s)	637, 693
CspAI	ACCGGT	1 cut(s)	639
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	2 cut(s)	637, 693
DdeI	CTNAG	3 cut(s)	26, 171, 294
DpnI	GATC	4 cut(s)	140, 169, 606, 721
DpnII	GATC	4 cut(s)	138, 167, 604, 719
EaeI	YGGCCR	2 cut(s)	3, 644
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	56
EcoRI	GAATTC	2 cut(s)	275, 616
EcoRII	CCWGG	2 cut(s)	516, 677
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 508, 674
FalI	AAGNNNNNCTT	4 cut(s)	274, 306, 568, 600
FatI	CATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	4 cut(s)	55, 423, 447, 647
Fsp4HI	GCNGC	4 cut(s)	55, 423, 447, 647
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	4 cut(s)	55, 423, 447, 647
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	3 cut(s)	5, 410, 646
HapII	CCGG	3 cut(s)	411, 569, 640
HgaI	GACGC	2 cut(s)	175, 598
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	3 cut(s)	15, 70, 503
HpaII	CCGG	3 cut(s)	411, 569, 640
HphI	GGTGA	2 cut(s)	446, 532
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	6 cut(s)	14, 143, 172, 297, 604, 609
Hpy188III	TCNNGA	1 cut(s)	621
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	5 cut(s)	136, 139, 158, 191, 592
HpyAV	CCTTC	6 cut(s)	197, 240, 300, 349, 570, 574
HpyCH4III	ACNGT	3 cut(s)	225, 376, 697
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	3 cut(s)	180, 337, 748
HpyF3I	CTNAG	3 cut(s)	26, 171, 294
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	138, 167, 604, 719
LmnI	GCTCC	6 cut(s)	249, 419, 571, 631, 681, 731
Lsp1109I	GCAGC	3 cut(s)	41, 409, 458
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	2 cut(s)	376, 463
MalI	GATC	4 cut(s)	140, 169, 606, 721
MboI	GATC	4 cut(s)	138, 167, 604, 719
MboII	GAAGA	2 cut(s)	332, 718
MflI	RGATCY	2 cut(s)	167, 719
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	121, 264, 275, 391, 616, 710, 751
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	64, 512
MmeI	TCCRAC	2 cut(s)	572, 582
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	470, 671
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	411, 569, 640
MspR9I	CCNGG	3 cut(s)	412, 518, 679
MvaI	CCWGG	2 cut(s)	518, 679
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	4 cut(s)	138, 167, 604, 719
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	3 cut(s)	251, 327, 727
NmeAIII	GCCGAG	1 cut(s)	675
NmuCI	GTSAC	2 cut(s)	376, 463
NspV	TTCGAA	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	4 cut(s)	56, 424, 448, 648
PleI	GAGTC	2 cut(s)	64, 511
PpsI	GAGTC	2 cut(s)	64, 511
PshAI	GACNNNNGTC	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	516, 677
PspGI	CCWGG	2 cut(s)	516, 677
PspN4I	GGNNCC	3 cut(s)	251, 327, 727
PspPI	GGNCC	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	167, 719
RsaI	GTAC	2 cut(s)	638, 694
RsaNI	GTAC	2 cut(s)	637, 693
RseI	CAYNNNNRTG	2 cut(s)	470, 671
SalI	GTCGAC	1 cut(s)	133
SatI	GCNGC	4 cut(s)	55, 423, 447, 647
Sau3AI	GATC	4 cut(s)	138, 167, 604, 719
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	2 cut(s)	64, 512
ScrFI	CCNGG	3 cut(s)	412, 518, 679
SfuI	TTCGAA	1 cut(s)	119
SgrDI	CGTCGACG	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	470, 671
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	7 cut(s)	121, 264, 275, 391, 616, 710, 751
SsiI	CCGC	2 cut(s)	432, 647
StyD4I	CCNGG	3 cut(s)	410, 516, 677
TaaI	ACNGT	3 cut(s)	225, 376, 697
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	7 cut(s)	93, 119, 134, 273, 310, 470, 587
TasI	AATT	7 cut(s)	121, 264, 275, 391, 616, 710, 751
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	1 cut(s)	15
TseFI	GTSAC	2 cut(s)	376, 463
TseI	GCWGC	3 cut(s)	54, 422, 446
Tsp45I	GTSAC	2 cut(s)	376, 463
TspDTI	ATGAA	1 cut(s)	719
XapI	RAATTY	2 cut(s)	275, 616
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.