Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Forward (+)

40494126 .. 40494509

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTGGAGGAAACGTTGGAAATCCATGGCCATCATCTTTCCTCCGTGGCCAACTTCGGCCTTCGTCCTAGAGTTTTCTCGACCCAATCTTCACATATGACCCGGAGTTTATCGGTTTTGTTTCAAGGCGAGTCGTACTCCCTCCGGGTGAGTAAAGCGAAGCGAGCGCCGTCTCCGACTAAGAGGAAAGGCACGCTACGGCGGAGGAAGGCTTCGATGCCGGCGAGGCGGGATCAAAGCGAGAATTCCGAGCCAATGGAGCGATATCGGTGGCCGGAGAGGTTGAGGTTGGGCACTTGTATGACCAAGAGCTTAGATTATATGGTGGAGAGGAAGAAAGTGAATGGATCCGGCTCCAATGTGGTTAGGGAATTGCAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

127

Amino Acids

14.63

Weight (kDa)

10.9

Isoelectric Point (pI)

76.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	202, 229
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	3 cut(s)	240, 342, 355
AcoI	YGGCCR	3 cut(s)	28, 48, 272
AcsI	RAATTY	1 cut(s)	244
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	3 cut(s)	240, 342, 355
AoxI	GGCC	4 cut(s)	28, 48, 58, 272
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	169
AsuC2I	CCSGG	2 cut(s)	103, 146
AsuHPI	GGTGA	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	296
BalI	TGGCCA	2 cut(s)	30, 50
BamHI	GGATCC	1 cut(s)	347
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	2 cut(s)	154, 215
BcnI	CCSGG	2 cut(s)	103, 146
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	103, 146
BmiI	GGNNCC	2 cut(s)	349, 355
BmrFI	CCNGG	2 cut(s)	103, 146
BmsI	GCATC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpuMI	CCSGG	2 cut(s)	103, 146
BsaJI	CCNNGG	2 cut(s)	25, 45
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	25, 45
BseSI	GKGCMC	1 cut(s)	296
BshFI	GGCC	4 cut(s)	30, 50, 60, 274
BsiSI	CCGG	5 cut(s)	103, 145, 221, 275, 351
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsnI	GGCC	4 cut(s)	30, 50, 60, 274
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	232, 347
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	2 cut(s)	202, 229
BspANI	GGCC	4 cut(s)	30, 50, 60, 274
BspLI	GGNNCC	2 cut(s)	349, 355
BspPI	GGATC	3 cut(s)	240, 342, 355
BsrFI	RCCGGY	1 cut(s)	220
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	25, 45
BssMI	GATC	2 cut(s)	232, 347
BssT1I	CCWWGG	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	165, 194, 222
BstDEI	CTNAG	2 cut(s)	180, 313
BstDSI	CCRYGG	2 cut(s)	25, 45
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	235, 350
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	232, 347
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 226, 259
BstSCI	CCNGG	2 cut(s)	101, 144
BstSLI	GKGCMC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	4 cut(s)	30, 50, 60, 274
BtgI	CCRYGG	2 cut(s)	25, 45
Cac8I	GCNNGC	3 cut(s)	165, 194, 222
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	8 cut(s)	30, 50, 60, 212, 253, 274, 312, 354
CviKI_1	RGCY	8 cut(s)	30, 50, 60, 212, 253, 274, 312, 354
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	180, 313
DpnI	GATC	2 cut(s)	234, 349
DpnII	GATC	2 cut(s)	232, 347
EaeI	YGGCCR	3 cut(s)	28, 48, 272
EciI	GGCGGA	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	29
FaiI	YATR	6 cut(s)	27, 96, 98, 302, 321, 323
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	222
FauNDI	CATATG	1 cut(s)	96
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	30, 50, 60, 274
HapII	CCGG	5 cut(s)	103, 145, 221, 275, 351
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	5 cut(s)	103, 145, 221, 275, 351
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	177, 250
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	71, 202
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 226, 259
HpyF3I	CTNAG	2 cut(s)	180, 313
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	232, 347
LmnI	GCTCC	2 cut(s)	259, 359
LpnPI	CCDG	5 cut(s)	116, 158, 234, 288, 364
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	14
MalI	GATC	2 cut(s)	234, 349
MboI	GATC	2 cut(s)	232, 347
MboII	GAAGA	2 cut(s)	81, 346
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	2 cut(s)	30, 50
MluCI	AATT	3 cut(s)	244, 371, 379
MluNI	TGGCCA	2 cut(s)	30, 50
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	8 cut(s)	52, 152, 177, 198, 219, 273, 279, 324
Mox20I	TGGCCA	2 cut(s)	30, 50
MroNI	GCCGGC	1 cut(s)	220
MscI	TGGCCA	2 cut(s)	30, 50
MseI	TTAA	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	299
Msp20I	TGGCCA	2 cut(s)	30, 50
MspI	CCGG	5 cut(s)	103, 145, 221, 275, 351
MspR9I	CCNGG	2 cut(s)	103, 146
MwoI	GCNNNNNNNGC	3 cut(s)	164, 226, 259
NaeI	GCCGGC	1 cut(s)	222
NciI	CCSGG	2 cut(s)	103, 146
NcoI	CCATGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	2 cut(s)	232, 347
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	29
NlaIV	GGNNCC	2 cut(s)	349, 355
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp1406I	AACGTT	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	349, 355
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	232, 347
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	103, 146
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	4 cut(s)	17, 284, 290, 314
SfaNI	GCATC	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	244, 371, 379
SsiI	CCGC	2 cut(s)	202, 229
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	101, 144
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	2 cut(s)	80, 215
TasI	AATT	3 cut(s)	244, 371, 379
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	34
XapI	RAATTY	1 cut(s)	244
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.